| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ydiA [C]
Identifier: 91788903
GI number: 91788903
Start: 3208743
End: 3209564
Strand: Direct
Name: ydiA [C]
Synonym: Bpro_3043
Alternate gene names: 91788903
Gene position: 3208743-3209564 (Clockwise)
Preceding gene: 91788898
Following gene: 91788904
Centisome position: 61.7
GC content: 60.83
Gene sequence:
>822_bases ATGTCCCAACGCACCGTGTTTTTCATCTCCGACGGCACTGGCATTACCGCCGAAACCTTTGGTAACGCCATCCTGGCGCA GTTTGAGTTCAAGCCCCGCCATGTCCGGCTGCCGTTTATCGACAGCGTGGACAAGGCCCACCAGGCCATCCGGCAGATCA ACCACGCGGCGGAAGTGGAAGGCAAGCGGCCCATTGTTTTTACGACGCTGGTGAACATGGAGATCCTGGCCGTCATCAAA ACCCACTGCAACGGCATGCTGCTGGACATGTTTGGCATGTTTGTGGCGCCGCTTGAGAGCGAGCTGGGCATCAAGTCCAA TCACCGGGTGGGCCGCTTTTCGGATGCCTCCAAAAGCAAGGAATACGACGACCGGATCGAGGCGATCAACTTCTCGCTGG CCCACGACGACGGCCAGAGCAACAAGGACCTGGCGGGCTCTGACGTGATTCTGGTGGGCGTGAGCCGCAGCGGCAAGACG CCGACCTCGCTGTACCTCGCCATGCAGTACGGGCTCAAGGCCTCCAACTACCCGCTGATTCCGGAAGACTTTGAGCGCCG CCAGCTACCGCCTGCGCTGGTGCCGCACCGCAAGAAAATCTTTGGCCTGACGATTGCTCCCGAGCGCCTGAGCCAGATCC GCAACGAACGCCGGCCCCACTCCACCTACGCCAGCCTGGCCAATTGCCGCCATGAAATCCACGAGGCCGAAGCGATGATG CGGCGCGAAGGCATACGCTGGCTGTCCACCACCACCAAGTCCATCGAAGAGATTTCCACCACCATCCTGCAGGAAATCCG GCCGGAGCGGCTGGAGTACTGA
Upstream 100 bases:
>100_bases ATGGCGTGACAATCGGGATAATTGCCACGATTGTAGGGGCCTGCGGCCGGATGTGCCGCGTCAGCCTTTCACCCAGCTTT CAATCAGACAGACGCCCACC
Downstream 100 bases:
>100_bases CTGCCGAAATCGATTTTCCAGCTCACCCGGAGCTGCAGTCGCTATCATTTTTGCAGCTCGTTACGCCCACTGATATCGGC ATACAGCCACATTTTCGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MSQRTVFFISDGTGITAETFGNAILAQFEFKPRHVRLPFIDSVDKAHQAIRQINHAAEVEGKRPIVFTTLVNMEILAVIK THCNGMLLDMFGMFVAPLESELGIKSNHRVGRFSDASKSKEYDDRIEAINFSLAHDDGQSNKDLAGSDVILVGVSRSGKT PTSLYLAMQYGLKASNYPLIPEDFERRQLPPALVPHRKKIFGLTIAPERLSQIRNERRPHSTYASLANCRHEIHEAEAMM RREGIRWLSTTTKSIEEISTTILQEIRPERLEY
Sequences:
>Translated_273_residues MSQRTVFFISDGTGITAETFGNAILAQFEFKPRHVRLPFIDSVDKAHQAIRQINHAAEVEGKRPIVFTTLVNMEILAVIK THCNGMLLDMFGMFVAPLESELGIKSNHRVGRFSDASKSKEYDDRIEAINFSLAHDDGQSNKDLAGSDVILVGVSRSGKT PTSLYLAMQYGLKASNYPLIPEDFERRQLPPALVPHRKKIFGLTIAPERLSQIRNERRPHSTYASLANCRHEIHEAEAMM RREGIRWLSTTTKSIEEISTTILQEIRPERLEY >Mature_272_residues SQRTVFFISDGTGITAETFGNAILAQFEFKPRHVRLPFIDSVDKAHQAIRQINHAAEVEGKRPIVFTTLVNMEILAVIKT HCNGMLLDMFGMFVAPLESELGIKSNHRVGRFSDASKSKEYDDRIEAINFSLAHDDGQSNKDLAGSDVILVGVSRSGKTP TSLYLAMQYGLKASNYPLIPEDFERRQLPPALVPHRKKIFGLTIAPERLSQIRNERRPHSTYASLANCRHEIHEAEAMMR REGIRWLSTTTKSIEEISTTILQEIRPERLEY
Specific function: Unknown
COG id: COG1806
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate, phosphate dikinase regulatory protein family [H]
Homologues:
Organism=Escherichia coli, GI1787995, Length=263, Percent_Identity=46.7680608365019, Blast_Score=234, Evalue=5e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005177 [H]
Pfam domain/function: PF03618 DUF299 [H]
EC number: NA
Molecular weight: Translated: 30894; Mature: 30763
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRTVFFISDGTGITAETFGNAILAQFEFKPRHVRLPFIDSVDKAHQAIRQINHAAEVE CCCCEEEEEECCCCCCHHHHCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHCC GKRPIVFTTLVNMEILAVIKTHCNGMLLDMFGMFVAPLESELGIKSNHRVGRFSDASKSK CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCC EYDDRIEAINFSLAHDDGQSNKDLAGSDVILVGVSRSGKTPTSLYLAMQYGLKASNYPLI HHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHEEEEEECCCCCCCCCCC PEDFERRQLPPALVPHRKKIFGLTIAPERLSQIRNERRPHSTYASLANCRHEIHEAEAMM CCHHHHHCCCCCCCCCCHHEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH RREGIRWLSTTTKSIEEISTTILQEIRPERLEY HHHCCHHHHHHHHHHHHHHHHHHHHHCHHHCCC >Mature Secondary Structure SQRTVFFISDGTGITAETFGNAILAQFEFKPRHVRLPFIDSVDKAHQAIRQINHAAEVE CCCEEEEEECCCCCCHHHHCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHCC GKRPIVFTTLVNMEILAVIKTHCNGMLLDMFGMFVAPLESELGIKSNHRVGRFSDASKSK CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCC EYDDRIEAINFSLAHDDGQSNKDLAGSDVILVGVSRSGKTPTSLYLAMQYGLKASNYPLI HHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHEEEEEECCCCCCCCCCC PEDFERRQLPPALVPHRKKIFGLTIAPERLSQIRNERRPHSTYASLANCRHEIHEAEAMM CCHHHHHCCCCCCCCCCHHEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH RREGIRWLSTTTKSIEEISTTILQEIRPERLEY HHHCCHHHHHHHHHHHHHHHHHHHHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA