Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 91788885

GI number: 91788885

Start: 3191739

End: 3192416

Strand: Direct

Name: ydhC [H]

Synonym: Bpro_3025

Alternate gene names: 91788885

Gene position: 3191739-3192416 (Clockwise)

Preceding gene: 91788879

Following gene: 91788886

Centisome position: 61.38

GC content: 61.95

Gene sequence:

>678_bases
ATGACCTCACTCAAAGAAAAACCTGAACAGGGACTGCCGCTTTTCATTGCGGAAGAGCTCAAGCACCTGATCTACACCGG
CGCACTCAAGCCCGGCGAGCGCCTCAATGAAGCGGCGCTGGCGCTGCGCATGGGCACCAGCCGCGGCCCGATCCGGGAGG
CCATCCGCGTGCTGACGGGCCTGGGCATCGTCAAGGCGGTGGTCAACCGCGGCGTCTTCGTGCGGCAGATTTCAGTGCGC
GAGATGCTGGAGATCTACGAACTCCGGGCGCTCGTCTTCGGCTTCGCCGCCGAACGGGCCACGGAACATATCAACGAAGA
GCACAAGCAGCAGTTTGAGCGGCTACTCGCGCAGATGGATGCAGCCTGCGACGCTGAAGACGCCGATCTGTACTACGACC
TGAACCTGCAATTCCATGCGCTGATCCTGCGCCTGTCCAACAACCAGCGGGCCCATGAAACATATGACGACTATGTCAAG
GAGCTGCACCTGTTCAGGCGGCGCTACTTCAACTCGCCCGGCAACATGCGGCGCTCCAACATCGAGCACCGGAGCATCTA
CGAGGCCATCGTCAAAGGGGCCAAAGCCCGGGCGAAATCGGCCGCTGAACGCCATGTGCTGTCGGGACGGGAACGCCTGC
TGGCCAGCATCGATGACAGCAGCCCCCTGTCGTCCTAG

Upstream 100 bases:

>100_bases
GAACACTTATGCCTGTTTCGTCTTCTGAAAATATATTTTTCAGGTACCATCTCTGCACCGGAAGCACGCGCCAGATTGCG
CGGGCCCGGCCCCTCCAGCC

Downstream 100 bases:

>100_bases
GAGCCCACTGTGCGCAGGGTGAGCGACGATAATCTGGCCATGAGTTCCCCGCCCGCGGAAGTGCGCCCGCAACCCAAATC
CCTCACCGACCTGTTTGTCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTSLKEKPEQGLPLFIAEELKHLIYTGALKPGERLNEAALALRMGTSRGPIREAIRVLTGLGIVKAVVNRGVFVRQISVR
EMLEIYELRALVFGFAAERATEHINEEHKQQFERLLAQMDAACDAEDADLYYDLNLQFHALILRLSNNQRAHETYDDYVK
ELHLFRRRYFNSPGNMRRSNIEHRSIYEAIVKGAKARAKSAAERHVLSGRERLLASIDDSSPLSS

Sequences:

>Translated_225_residues
MTSLKEKPEQGLPLFIAEELKHLIYTGALKPGERLNEAALALRMGTSRGPIREAIRVLTGLGIVKAVVNRGVFVRQISVR
EMLEIYELRALVFGFAAERATEHINEEHKQQFERLLAQMDAACDAEDADLYYDLNLQFHALILRLSNNQRAHETYDDYVK
ELHLFRRRYFNSPGNMRRSNIEHRSIYEAIVKGAKARAKSAAERHVLSGRERLLASIDDSSPLSS
>Mature_224_residues
TSLKEKPEQGLPLFIAEELKHLIYTGALKPGERLNEAALALRMGTSRGPIREAIRVLTGLGIVKAVVNRGVFVRQISVRE
MLEIYELRALVFGFAAERATEHINEEHKQQFERLLAQMDAACDAEDADLYYDLNLQFHALILRLSNNQRAHETYDDYVKE
LHLFRRRYFNSPGNMRRSNIEHRSIYEAIVKGAKARAKSAAERHVLSGRERLLASIDDSSPLSS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25632; Mature: 25501

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLKEKPEQGLPLFIAEELKHLIYTGALKPGERLNEAALALRMGTSRGPIREAIRVLTG
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGIVKAVVNRGVFVRQISVREMLEIYELRALVFGFAAERATEHINEEHKQQFERLLAQMD
HHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AACDAEDADLYYDLNLQFHALILRLSNNQRAHETYDDYVKELHLFRRRYFNSPGNMRRSN
HCCCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
IEHRSIYEAIVKGAKARAKSAAERHVLSGRERLLASIDDSSPLSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSLKEKPEQGLPLFIAEELKHLIYTGALKPGERLNEAALALRMGTSRGPIREAIRVLTG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGIVKAVVNRGVFVRQISVREMLEIYELRALVFGFAAERATEHINEEHKQQFERLLAQMD
HHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AACDAEDADLYYDLNLQFHALILRLSNNQRAHETYDDYVKELHLFRRRYFNSPGNMRRSN
HCCCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
IEHRSIYEAIVKGAKARAKSAAERHVLSGRERLLASIDDSSPLSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]