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The map label for this gene is intF [H]

Identifier: 91788824

GI number: 91788824

Start: 3126147

End: 3127310

Strand: Direct

Name: intF [H]

Synonym: Bpro_2964

Alternate gene names: 91788824

Gene position: 3126147-3127310 (Clockwise)

Preceding gene: 91788822

Following gene: 91788825

Centisome position: 60.12

GC content: 57.73

Gene sequence:

>1164_bases
ATGAGCGAAAAATTCAGATTCACAAAGCCCCGAATCGAAGCATTACCCCCTGCCCTACCTGGTAAGCGCGACGAATACCG
GGACGAGGCTTTGCCCGGCTTATGGCTACGCGTCAGCTCGGCAGGCGTGAAAACCTATGCGGTATTGGCTCGAAAGAAAG
GCGGCGCATTGGAGCGCGTGACTATTGGCACGGCCGACAAGCTGACGCCCGAAAACGCCCGCGATAAAGCGAAGAAAATC
ATTGCCGACCTGGCGACCGGCGTAAGCCACGCGGCATCGGCCCGGGCAAAGCGCGGCGAGACAACCTTTGCCGAATTGTT
GACCGACTACCTGAGCAACACCACCATGAAGCCGCGAAGCCTTGAGGCGTATCAGTGGCTCTACAAAAAGCACGTCGAGG
CCGACTTAGGCAAACGCAAGTTGTCCGATGTTAGCGTTGAGCGGATTCGGGCCCTTCACAAGAAAATCTCCAAGGACACC
CCCACCACGGCAAACCGCTGCGTTTCAATGGTCAAGGCTGCGTTCAACTGGGCCCTGAAGGAAGGCACCTACACGGGCGC
AAACCCTGCCGGCCACGTCAAGAAAAATACCGAGACTTCCCGCACGCGGTATCTGCAGCCGGCAGAGCTGGCGATATTCT
TTCAGGCGCTGGAAGAGTCAGAGGAGCCTGCGAAAAGCTTTTTTATGCTGTGTCTGCTGACCGGCGCGCGGCGCGCCAAC
GTGCTCGCGATGCGCTGGGCCGATATCAGCCTGGAGGATGGAATATGGCGTATTCCTGCAGGCGATGCGAAGGCCGGCGA
AGAAATGAATATCCCGCTAGTTCCCGAAGCCGTAACGCTACTCACAAGGCTAAAAATCGAGGTAGCCGACACGTCGCCCT
GGGTGTTCCCTGCTGACAGCAAAACGGGCCATTACCAAGAGCCGAAACGAGCTTGGGCAACCCTGCGCCGCCGTTCTGGA
TTAGCGGATTTACGCATTCACGACTTGCGGCGAACAATGGGATCCTGGCTTGTCAGGACGGGTGCCAATACCGCGATTAA
CGCCAAGGCACTCGGCCACAAGTCCATGCAAGCCGCTGCTGTGTATCAGCGTATTGCAGACGTTGACCCGGTTCGCGACG
CAATGGAAAAGGCCACCACAGCATTCATGGGAGGCAAGCGATGA

Upstream 100 bases:

>100_bases
GCTTTGCGCTATCATTGACCTTAATGGGTAACAATGAAACTTCATCAAGTTTTATCAAATCTGTTACCCCGGCGTTACCC
CGGAAGGTCAAAAACGGCGT

Downstream 100 bases:

>100_bases
TTGCATTTGACCCCTTTACCGCTACCCTAGCCGAGGCATTTGCCCAACCAAATCCACATGACGCAGTGCCTCTCCACGGC
GAGGCGCAAGCCATCATTGA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSEKFRFTKPRIEALPPALPGKRDEYRDEALPGLWLRVSSAGVKTYAVLARKKGGALERVTIGTADKLTPENARDKAKKI
IADLATGVSHAASARAKRGETTFAELLTDYLSNTTMKPRSLEAYQWLYKKHVEADLGKRKLSDVSVERIRALHKKISKDT
PTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKKNTETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRAN
VLAMRWADISLEDGIWRIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKTGHYQEPKRAWATLRRRSG
LADLRIHDLRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIADVDPVRDAMEKATTAFMGGKR

Sequences:

>Translated_387_residues
MSEKFRFTKPRIEALPPALPGKRDEYRDEALPGLWLRVSSAGVKTYAVLARKKGGALERVTIGTADKLTPENARDKAKKI
IADLATGVSHAASARAKRGETTFAELLTDYLSNTTMKPRSLEAYQWLYKKHVEADLGKRKLSDVSVERIRALHKKISKDT
PTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKKNTETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRAN
VLAMRWADISLEDGIWRIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKTGHYQEPKRAWATLRRRSG
LADLRIHDLRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIADVDPVRDAMEKATTAFMGGKR
>Mature_386_residues
SEKFRFTKPRIEALPPALPGKRDEYRDEALPGLWLRVSSAGVKTYAVLARKKGGALERVTIGTADKLTPENARDKAKKII
ADLATGVSHAASARAKRGETTFAELLTDYLSNTTMKPRSLEAYQWLYKKHVEADLGKRKLSDVSVERIRALHKKISKDTP
TTANRCVSMVKAAFNWALKEGTYTGANPAGHVKKNTETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRANV
LAMRWADISLEDGIWRIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKTGHYQEPKRAWATLRRRSGL
ADLRIHDLRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIADVDPVRDAMEKATTAFMGGKR

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=431, Percent_Identity=24.8259860788863, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786748, Length=221, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42934; Mature: 42803

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKFRFTKPRIEALPPALPGKRDEYRDEALPGLWLRVSSAGVKTYAVLARKKGGALERV
CCCCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEE
TIGTADKLTPENARDKAKKIIADLATGVSHAASARAKRGETTFAELLTDYLSNTTMKPRS
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH
LEAYQWLYKKHVEADLGKRKLSDVSVERIRALHKKISKDTPTTANRCVSMVKAAFNWALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EGTYTGANPAGHVKKNTETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRAN
CCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
VLAMRWADISLEDGIWRIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADTSPWVFPADS
EEEEEEECCEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCEEEECCC
KTGHYQEPKRAWATLRRRSGLADLRIHDLRRTMGSWLVRTGANTAINAKALGHKSMQAAA
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHH
VYQRIADVDPVRDAMEKATTAFMGGKR
HHHHHHCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEKFRFTKPRIEALPPALPGKRDEYRDEALPGLWLRVSSAGVKTYAVLARKKGGALERV
CCCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEE
TIGTADKLTPENARDKAKKIIADLATGVSHAASARAKRGETTFAELLTDYLSNTTMKPRS
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH
LEAYQWLYKKHVEADLGKRKLSDVSVERIRALHKKISKDTPTTANRCVSMVKAAFNWALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EGTYTGANPAGHVKKNTETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRAN
CCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
VLAMRWADISLEDGIWRIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADTSPWVFPADS
EEEEEEECCEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCEEEECCC
KTGHYQEPKRAWATLRRRSGLADLRIHDLRRTMGSWLVRTGANTAINAKALGHKSMQAAA
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHH
VYQRIADVDPVRDAMEKATTAFMGGKR
HHHHHHCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]