| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is prpE [H]
Identifier: 91788495
GI number: 91788495
Start: 2766635
End: 2768560
Strand: Reverse
Name: prpE [H]
Synonym: Bpro_2633
Alternate gene names: 91788495
Gene position: 2768560-2766635 (Counterclockwise)
Preceding gene: 91788496
Following gene: 91788494
Centisome position: 53.24
GC content: 63.08
Gene sequence:
>1926_bases ATGAGCAGCACAGCGGAAACCTACAAGGCGTTCTACCAGCGTTCGATAGACCAGCCTGACGCCTTCTGGGCCGAGCAGGC TCAACTGATTGACTGGCACAAGCCGTTCAACCGGGTGTGCAACTACGACAAGCCGCCATTTGTGCACTGGTATGAGGGCG GGCAGACCAACCTGTGCCACAACGCGGTAGACCGGCACCTCAAGGACAGGGCGAACCAGGCGGCGCTGATTTATGTCTCG AGCGAGACTGGCCAGGAAAAAACCTACACCTTTGCCGAGCTGCATGTGGAAGTGCAGCGCATGGCGGCCAGCCTGAAGGC GCTGGGCGTGCAAAAGGGCGACCGGGTGCTGATCTACATGCCGATGATTGCCGAGGCGGCATTTGCCATGCTGGCCTGCG CACGCATTGGCGCCATTCACTGCGTGGTGTTTGGCGGCTTTGCCAGCGGTTCGCTGGCGTCGCGCATCGACGATGCCACC CCCAAAGTGATTGTCAGCGCGGATGCCGGCTCGCGCGGCGGCAAGGTGGTGGCGTACAAGCCGCTGCTCGACGAAGCCAT ACGCCTTTCCCGCCACCAGCCCGAGTCGGTTTTGCTGGTGGACCGCAAGCTGGCGCCCATGGCGCTGGTGGCGGGGCGCG ACCAGCTATGGGGCGATTTGCGTCAGCAGCATCTGGATGCGCAGGTGCCATGTGAGTGGCTGGACTCCACGGCCATCAGC TACACGATTTACACCAGCGGCACCACTGGCAAACCCAAGGGCGTGCAGCGCGACACGGGCGGGTATGCCGTGGCGCTGGC GGCCAGCATGAAACATATTTTTGACGGCCGTGCCGGGGAAACCTATTTCTCCACCAGCGACATTGGCTGGGTGGTGGGCC ACAGCTACATCATTTACGGGCCACTGATCGCCGGCATGGCGACCATCATGTACGAAGGCCTGCCGACGCAGGGCATGGAC GGCCACGCCGATGGCGCCATCTGGTGGCGCCTGGTGGAGAAATACAAGGTCACCGCGATGTTCAGCGCTCCGACTGCCGT GCGCGTGCTGAAAAAGCAGGATCCGGCGCTCCTGAAAAAACACGATCTTTCCAGCCTGCGTGCGCTGTTTCTGGCGGGCG AGCCGCTCGATGAGCCGACCGCCCGATGGATCAGTGACGGGCTGGGTGTGCCCATCATCGACAACTACTGGCAAACCGAA ACCGGCTGGCCGCTGCTGACGGTGGCCAACGGCGTGGAGCGCACGCCCAGCAAGTTTGGCAGCCCCGGCGTTCCGATGTA TGGCTACCGTGTCAAGCTGTTGCATGAGGCGACGGGCGAAGAACTCACGCAGCCCAATGAAAAAGGCGTGGTGGTCCTTG AAGGCCCCACGCCACCGGGCTTCATGCAAACCGTCTGGCAAGACGACGCGCGCTTTGTCAACACCTACTGGAAGAGCGTG CCGGGCAAGATGGTCTACAGCACCTTCGACTGGGGCATACGCGACGAGGACGGTTACTACTTCATTCTGGGCCGTACTGA CGACGTGATCAATGTCGCCGGGCACCGTCTGGGCACGCGCGAGATTGAAGAAAGCATCTCCGGCCATCCGCTGGTGGCCG AGGTGGCGGTGGTGGGTGTGGCCGACGCGCTGAAAGGACAGGTGGCCATGGCGTTTGCCGTGCTCAAGGATGCCAGTTTG CTGCAAGACGGTGCGGCGACGCTCAAGCTGGAGGGCGAGATCATGAAGCGCGTTGATGGTGACCTGGGTGCGGTCGCGCG GCCGGCCAGGGTGCGCTTTGTCACGGCGCTGCCCAAGACCCGCAGCGGCAAGCTGCTGCGTCGCGCCATCCAGGCCGTGT GTGAAGGGCGAGATGCCGGAGATCTGACCACCATGGACGACCCTGCCGCGCTGCAGCAAATTCGCGACCGGGTGTCGGCT TCCTGA
Upstream 100 bases:
>100_bases CGACCTGATGGCGGGCAAGGTCCGCGGCCGCGTGGTCGTCAAGATCTGAAGCGGGCATGAAGCCAACCAAGTCATAAAGC CATAAAACCGGAGACACACG
Downstream 100 bases:
>100_bases CGCATTCCTGGCATTGAACCTAGAAACAGCAGTTGACCGCTCGCAAACTTCAGGAAAGCCGCATGCCCATGGACTTTCCC CTCTTCGATGGCGTTTACCT
Product: propionyl-CoA synthetase
Products: NA
Alternate protein names: Propionyl-CoA synthetase [H]
Number of amino acids: Translated: 641; Mature: 640
Protein sequence:
>641_residues MSSTAETYKAFYQRSIDQPDAFWAEQAQLIDWHKPFNRVCNYDKPPFVHWYEGGQTNLCHNAVDRHLKDRANQAALIYVS SETGQEKTYTFAELHVEVQRMAASLKALGVQKGDRVLIYMPMIAEAAFAMLACARIGAIHCVVFGGFASGSLASRIDDAT PKVIVSADAGSRGGKVVAYKPLLDEAIRLSRHQPESVLLVDRKLAPMALVAGRDQLWGDLRQQHLDAQVPCEWLDSTAIS YTIYTSGTTGKPKGVQRDTGGYAVALAASMKHIFDGRAGETYFSTSDIGWVVGHSYIIYGPLIAGMATIMYEGLPTQGMD GHADGAIWWRLVEKYKVTAMFSAPTAVRVLKKQDPALLKKHDLSSLRALFLAGEPLDEPTARWISDGLGVPIIDNYWQTE TGWPLLTVANGVERTPSKFGSPGVPMYGYRVKLLHEATGEELTQPNEKGVVVLEGPTPPGFMQTVWQDDARFVNTYWKSV PGKMVYSTFDWGIRDEDGYYFILGRTDDVINVAGHRLGTREIEESISGHPLVAEVAVVGVADALKGQVAMAFAVLKDASL LQDGAATLKLEGEIMKRVDGDLGAVARPARVRFVTALPKTRSGKLLRRAIQAVCEGRDAGDLTTMDDPAALQQIRDRVSA S
Sequences:
>Translated_641_residues MSSTAETYKAFYQRSIDQPDAFWAEQAQLIDWHKPFNRVCNYDKPPFVHWYEGGQTNLCHNAVDRHLKDRANQAALIYVS SETGQEKTYTFAELHVEVQRMAASLKALGVQKGDRVLIYMPMIAEAAFAMLACARIGAIHCVVFGGFASGSLASRIDDAT PKVIVSADAGSRGGKVVAYKPLLDEAIRLSRHQPESVLLVDRKLAPMALVAGRDQLWGDLRQQHLDAQVPCEWLDSTAIS YTIYTSGTTGKPKGVQRDTGGYAVALAASMKHIFDGRAGETYFSTSDIGWVVGHSYIIYGPLIAGMATIMYEGLPTQGMD GHADGAIWWRLVEKYKVTAMFSAPTAVRVLKKQDPALLKKHDLSSLRALFLAGEPLDEPTARWISDGLGVPIIDNYWQTE TGWPLLTVANGVERTPSKFGSPGVPMYGYRVKLLHEATGEELTQPNEKGVVVLEGPTPPGFMQTVWQDDARFVNTYWKSV PGKMVYSTFDWGIRDEDGYYFILGRTDDVINVAGHRLGTREIEESISGHPLVAEVAVVGVADALKGQVAMAFAVLKDASL LQDGAATLKLEGEIMKRVDGDLGAVARPARVRFVTALPKTRSGKLLRRAIQAVCEGRDAGDLTTMDDPAALQQIRDRVSA S >Mature_640_residues SSTAETYKAFYQRSIDQPDAFWAEQAQLIDWHKPFNRVCNYDKPPFVHWYEGGQTNLCHNAVDRHLKDRANQAALIYVSS ETGQEKTYTFAELHVEVQRMAASLKALGVQKGDRVLIYMPMIAEAAFAMLACARIGAIHCVVFGGFASGSLASRIDDATP KVIVSADAGSRGGKVVAYKPLLDEAIRLSRHQPESVLLVDRKLAPMALVAGRDQLWGDLRQQHLDAQVPCEWLDSTAISY TIYTSGTTGKPKGVQRDTGGYAVALAASMKHIFDGRAGETYFSTSDIGWVVGHSYIIYGPLIAGMATIMYEGLPTQGMDG HADGAIWWRLVEKYKVTAMFSAPTAVRVLKKQDPALLKKHDLSSLRALFLAGEPLDEPTARWISDGLGVPIIDNYWQTET GWPLLTVANGVERTPSKFGSPGVPMYGYRVKLLHEATGEELTQPNEKGVVVLEGPTPPGFMQTVWQDDARFVNTYWKSVP GKMVYSTFDWGIRDEDGYYFILGRTDDVINVAGHRLGTREIEESISGHPLVAEVAVVGVADALKGQVAMAFAVLKDASLL QDGAATLKLEGEIMKRVDGDLGAVARPARVRFVTALPKTRSGKLLRRAIQAVCEGRDAGDLTTMDDPAALQQIRDRVSAS
Specific function: Catalyzes the synthesis of propionyl-CoA from propionate and CoA. Also converts acetate to acetyl-CoA but with a lower specific activity [H]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=644, Percent_Identity=40.6832298136646, Blast_Score=481, Evalue=1e-136, Organism=Homo sapiens, GI8923896, Length=669, Percent_Identity=37.219730941704, Blast_Score=421, Evalue=1e-117, Organism=Homo sapiens, GI253970489, Length=682, Percent_Identity=36.6568914956012, Blast_Score=417, Evalue=1e-116, Organism=Homo sapiens, GI28416953, Length=649, Percent_Identity=36.8258859784284, Blast_Score=394, Evalue=1e-109, Organism=Homo sapiens, GI42544132, Length=535, Percent_Identity=26.3551401869159, Blast_Score=171, Evalue=3e-42, Organism=Homo sapiens, GI38505220, Length=567, Percent_Identity=26.984126984127, Blast_Score=167, Evalue=3e-41, Organism=Homo sapiens, GI122937307, Length=552, Percent_Identity=28.2608695652174, Blast_Score=159, Evalue=6e-39, Organism=Homo sapiens, GI58082049, Length=551, Percent_Identity=27.0417422867514, Blast_Score=151, Evalue=2e-36, Organism=Homo sapiens, GI157311624, Length=554, Percent_Identity=26.8953068592058, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI157311622, Length=554, Percent_Identity=26.8953068592058, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI115511026, Length=547, Percent_Identity=25.9597806215722, Blast_Score=147, Evalue=4e-35, Organism=Homo sapiens, GI31982927, Length=673, Percent_Identity=24.2199108469539, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI42544134, Length=369, Percent_Identity=23.0352303523035, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI195947378, Length=468, Percent_Identity=23.7179487179487, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI187761345, Length=414, Percent_Identity=24.6376811594203, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI187761343, Length=414, Percent_Identity=24.6376811594203, Blast_Score=82, Evalue=1e-15, Organism=Escherichia coli, GI1786529, Length=629, Percent_Identity=64.3879173290938, Blast_Score=822, Evalue=0.0, Organism=Escherichia coli, GI1790505, Length=644, Percent_Identity=38.5093167701863, Blast_Score=453, Evalue=1e-128, Organism=Escherichia coli, GI221142682, Length=550, Percent_Identity=22.9090909090909, Blast_Score=106, Evalue=5e-24, Organism=Escherichia coli, GI1788107, Length=553, Percent_Identity=25.3164556962025, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI145693145, Length=543, Percent_Identity=23.2044198895028, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1786810, Length=542, Percent_Identity=21.2177121771218, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71983001, Length=658, Percent_Identity=35.8662613981763, Blast_Score=376, Evalue=1e-104, Organism=Caenorhabditis elegans, GI71982997, Length=658, Percent_Identity=35.8662613981763, Blast_Score=375, Evalue=1e-104, Organism=Caenorhabditis elegans, GI17531443, Length=557, Percent_Identity=26.3913824057451, Blast_Score=113, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17569507, Length=652, Percent_Identity=21.1656441717791, Blast_Score=110, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17559526, Length=571, Percent_Identity=24.6935201401051, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71996755, Length=535, Percent_Identity=23.7383177570093, Blast_Score=99, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17557194, Length=598, Percent_Identity=23.2441471571906, Blast_Score=99, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538037, Length=561, Percent_Identity=23.7076648841355, Blast_Score=95, Evalue=9e-20, Organism=Caenorhabditis elegans, GI71985884, Length=593, Percent_Identity=22.2596964586847, Blast_Score=91, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6319264, Length=659, Percent_Identity=39.453717754173, Blast_Score=461, Evalue=1e-130, Organism=Saccharomyces cerevisiae, GI6323182, Length=656, Percent_Identity=38.719512195122, Blast_Score=435, Evalue=1e-122, Organism=Saccharomyces cerevisiae, GI6319699, Length=381, Percent_Identity=23.0971128608924, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI21355225, Length=643, Percent_Identity=40.2799377916019, Blast_Score=469, Evalue=1e-132, Organism=Drosophila melanogaster, GI24667955, Length=660, Percent_Identity=36.8181818181818, Blast_Score=404, Evalue=1e-113, Organism=Drosophila melanogaster, GI62472339, Length=564, Percent_Identity=37.9432624113475, Blast_Score=358, Evalue=4e-99, Organism=Drosophila melanogaster, GI24667959, Length=534, Percent_Identity=37.0786516853933, Blast_Score=331, Evalue=1e-90, Organism=Drosophila melanogaster, GI21355181, Length=552, Percent_Identity=25.9057971014493, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI19922652, Length=568, Percent_Identity=25.5281690140845, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24648255, Length=504, Percent_Identity=25.3968253968254, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI24648253, Length=504, Percent_Identity=25.5952380952381, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI21358303, Length=486, Percent_Identity=22.2222222222222, Blast_Score=77, Evalue=5e-14, Organism=Drosophila melanogaster, GI20130357, Length=383, Percent_Identity=25.8485639686684, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648257, Length=377, Percent_Identity=27.0557029177719, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648260, Length=369, Percent_Identity=27.10027100271, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR012694 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.17 [H]
Molecular weight: Translated: 70212; Mature: 70081
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00226 IF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTAETYKAFYQRSIDQPDAFWAEQAQLIDWHKPFNRVCNYDKPPFVHWYEGGQTNLCH CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH NAVDRHLKDRANQAALIYVSSETGQEKTYTFAELHVEVQRMAASLKALGVQKGDRVLIYM HHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC PMIAEAAFAMLACARIGAIHCVVFGGFASGSLASRIDDATPKVIVSADAGSRGGKVVAYK CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCCEEEEEECCCCCCCEEEEEC PLLDEAIRLSRHQPESVLLVDRKLAPMALVAGRDQLWGDLRQQHLDAQVPCEWLDSTAIS HHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHCCCEEE YTIYTSGTTGKPKGVQRDTGGYAVALAASMKHIFDGRAGETYFSTSDIGWVVGHSYIIYG EEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEECCCCCHHHCCCEEEEH PLIAGMATIMYEGLPTQGMDGHADGAIWWRLVEKYKVTAMFSAPTAVRVLKKQDPALLKK HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCHHHHH HDLSSLRALFLAGEPLDEPTARWISDGLGVPIIDNYWQTETGWPLLTVANGVERTPSKFG HHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCHHHCC SPGVPMYGYRVKLLHEATGEELTQPNEKGVVVLEGPTPPGFMQTVWQDDARFVNTYWKSV CCCCCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC PGKMVYSTFDWGIRDEDGYYFILGRTDDVINVAGHRLGTREIEESISGHPLVAEVAVVGV CCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHH ADALKGQVAMAFAVLKDASLLQDGAATLKLEGEIMKRVDGDLGAVARPARVRFVTALPKT HHHHCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCCCCCCEEEEEEECCCC RSGKLLRRAIQAVCEGRDAGDLTTMDDPAALQQIRDRVSAS CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SSTAETYKAFYQRSIDQPDAFWAEQAQLIDWHKPFNRVCNYDKPPFVHWYEGGQTNLCH CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH NAVDRHLKDRANQAALIYVSSETGQEKTYTFAELHVEVQRMAASLKALGVQKGDRVLIYM HHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC PMIAEAAFAMLACARIGAIHCVVFGGFASGSLASRIDDATPKVIVSADAGSRGGKVVAYK CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCCEEEEEECCCCCCCEEEEEC PLLDEAIRLSRHQPESVLLVDRKLAPMALVAGRDQLWGDLRQQHLDAQVPCEWLDSTAIS HHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHCCCEEE YTIYTSGTTGKPKGVQRDTGGYAVALAASMKHIFDGRAGETYFSTSDIGWVVGHSYIIYG EEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEECCCCCHHHCCCEEEEH PLIAGMATIMYEGLPTQGMDGHADGAIWWRLVEKYKVTAMFSAPTAVRVLKKQDPALLKK HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCHHHHH HDLSSLRALFLAGEPLDEPTARWISDGLGVPIIDNYWQTETGWPLLTVANGVERTPSKFG HHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCHHHCC SPGVPMYGYRVKLLHEATGEELTQPNEKGVVVLEGPTPPGFMQTVWQDDARFVNTYWKSV CCCCCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC PGKMVYSTFDWGIRDEDGYYFILGRTDDVINVAGHRLGTREIEESISGHPLVAEVAVVGV CCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHH ADALKGQVAMAFAVLKDASLLQDGAATLKLEGEIMKRVDGDLGAVARPARVRFVTALPKT HHHHCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCCCCCCEEEEEEECCCC RSGKLLRRAIQAVCEGRDAGDLTTMDDPAALQQIRDRVSAS CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9006051; 10411265; 11677609; 10482501 [H]