| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788492
Identifier: 91788492
GI number: 91788492
Start: 2763282
End: 2764496
Strand: Reverse
Name: 91788492
Synonym: Bpro_2630
Alternate gene names: NA
Gene position: 2764496-2763282 (Counterclockwise)
Preceding gene: 91788493
Following gene: 91788491
Centisome position: 53.16
GC content: 63.87
Gene sequence:
>1215_bases ATGTCCAGATCTAGGTCCAGGCTGCTCCCCGGTGCCTGGCGGCTGACCGCCTGCGCCTGTGTATGGATGCTGGGCGTGGG TGCAAGCCAGGCGCAATCCCTGCCAGCGCCAAAGCGCGCAGCAGCGCAGGTTTCGCTGGCGGGTGCGGGTATTTCAGGCA TTGGCCGAACCGCCACGCCCGCGGAAATCAGGGCTTGGGACATTGACGTCCGGCCCGACTTCAAGGGGCTTCCCAAGGGG CAGGGCTCGGTACGCCAGGGTGAGGTCTTGTGGGAAGCCCAGTGTGCGTCCTGCCACGGCAGTTTTGCCGAGTCGTCGGA TGTGTTTACACCGCTGGTCGGGGGCGTGACGGCCCAGGACATCCGGGCCGGCCGGGTGGACAGCCTGTTGCCGGGTGCCA ACCAGCCGCATCGCACCACGCTGATGAAGTTGTCCACGCTGTCTACCCTGTGGGACTACATCAACCGGGCCATGCCCTGG AATGCGCCCAAAACATTGACTGCCGACGAGGTGTATGCCGCCACTGCCTACATCCTGCATCTGGGCAATGTATTGCCCGC GGACTTCACGCTATCTGACAGCAACATCCGCGAGGTGCAGGACCGCCTGCCCAACCGCCATGGCATGACCACCGCGCACG CGTTGTGGCCCGGCAAGGAGTTGGGTGGCACGGCGCGGCCCGATGTACAGGGCTTGGCCTGCATGAAAGACTGCAAGGCG CAAGCCGTCGTCAAAAGCTTTTTGCCCGACTATGCGCGCAATGCGCACGGCAACCTGGTGGACCAGTCACGCCTGGTGGG CGTCAGCCGCGGGGCCGATACCACACGGCCGCCCCAGGCCCGGAATTTTGAGCCAAATCTCGATGTAGCCCGATACGAGC GGTCTTCAAGTGCTCCTGAAAAAGGAGCGAAGGCTGCGTTGCCAGCTGCGGCGACCACGGCCCCCATCCCTGCGGGCACT GCGGGAGTCATGCCGCTGCTGCAGAAGAATGCCTGTGTTGCCTGCCATGGCATGGACAGTAAACTCGTCGGCCCGTCGTT CAGGGAGATCGCCGCGAAATATAAAGATCACGCCGATGCGGTGAATTACCTGTCGGGCAAAATCAGGGCAGGTGGACAGG GCGTCTGGGGCTCCATGGCCATGCCAGCACAGTCCTTGAGCCTGGCCGAATCGGCTCAGCTTGCCCAGTGGCTGGCGCTG GGGGCGAAACCATGA
Upstream 100 bases:
>100_bases CCGACCTACGCTGAATTGCGCAAGGTGCGTGCCTCGCGCAGCATTTATCACAACAACGCCATCCAGTCGTGGCTGCTGGA GGAAAACGGCGAGGTGAAAA
Downstream 100 bases:
>100_bases ATGGTGACGCGTCAAAATTGGTGAGTGCGGTGGTGACGTGGGATAAATCCCCTCCCGCGGGTGTCGGTTTTTGTGTCCAA TGGCGCTCAGGTTTCAAGAC
Product: class I cytochrome c
Products: NA
Alternate protein names: Cytochrome c552 [H]
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MSRSRSRLLPGAWRLTACACVWMLGVGASQAQSLPAPKRAAAQVSLAGAGISGIGRTATPAEIRAWDIDVRPDFKGLPKG QGSVRQGEVLWEAQCASCHGSFAESSDVFTPLVGGVTAQDIRAGRVDSLLPGANQPHRTTLMKLSTLSTLWDYINRAMPW NAPKTLTADEVYAATAYILHLGNVLPADFTLSDSNIREVQDRLPNRHGMTTAHALWPGKELGGTARPDVQGLACMKDCKA QAVVKSFLPDYARNAHGNLVDQSRLVGVSRGADTTRPPQARNFEPNLDVARYERSSSAPEKGAKAALPAAATTAPIPAGT AGVMPLLQKNACVACHGMDSKLVGPSFREIAAKYKDHADAVNYLSGKIRAGGQGVWGSMAMPAQSLSLAESAQLAQWLAL GAKP
Sequences:
>Translated_404_residues MSRSRSRLLPGAWRLTACACVWMLGVGASQAQSLPAPKRAAAQVSLAGAGISGIGRTATPAEIRAWDIDVRPDFKGLPKG QGSVRQGEVLWEAQCASCHGSFAESSDVFTPLVGGVTAQDIRAGRVDSLLPGANQPHRTTLMKLSTLSTLWDYINRAMPW NAPKTLTADEVYAATAYILHLGNVLPADFTLSDSNIREVQDRLPNRHGMTTAHALWPGKELGGTARPDVQGLACMKDCKA QAVVKSFLPDYARNAHGNLVDQSRLVGVSRGADTTRPPQARNFEPNLDVARYERSSSAPEKGAKAALPAAATTAPIPAGT AGVMPLLQKNACVACHGMDSKLVGPSFREIAAKYKDHADAVNYLSGKIRAGGQGVWGSMAMPAQSLSLAESAQLAQWLAL GAKP >Mature_403_residues SRSRSRLLPGAWRLTACACVWMLGVGASQAQSLPAPKRAAAQVSLAGAGISGIGRTATPAEIRAWDIDVRPDFKGLPKGQ GSVRQGEVLWEAQCASCHGSFAESSDVFTPLVGGVTAQDIRAGRVDSLLPGANQPHRTTLMKLSTLSTLWDYINRAMPWN APKTLTADEVYAATAYILHLGNVLPADFTLSDSNIREVQDRLPNRHGMTTAHALWPGKELGGTARPDVQGLACMKDCKAQ AVVKSFLPDYARNAHGNLVDQSRLVGVSRGADTTRPPQARNFEPNLDVARYERSSSAPEKGAKAALPAAATTAPIPAGTA GVMPLLQKNACVACHGMDSKLVGPSFREIAAKYKDHADAVNYLSGKIRAGGQGVWGSMAMPAQSLSLAESAQLAQWLALG AKP
Specific function: Reacts with hydrogenase [H]
COG id: COG4654
COG function: function code C; Cytochrome c551/c552
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR002324 [H]
Pfam domain/function: PF00034 Cytochrom_C [H]
EC number: NA
Molecular weight: Translated: 42709; Mature: 42578
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSRSRLLPGAWRLTACACVWMLGVGASQAQSLPAPKRAAAQVSLAGAGISGIGRTATP CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHEEEEECCCCCCCCCCCCC AEIRAWDIDVRPDFKGLPKGQGSVRQGEVLWEAQCASCHGSFAESSDVFTPLVGGVTAQD CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHCCCCHHH IRAGRVDSLLPGANQPHRTTLMKLSTLSTLWDYINRAMPWNAPKTLTADEVYAATAYILH HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH LGNVLPADFTLSDSNIREVQDRLPNRHGMTTAHALWPGKELGGTARPDVQGLACMKDCKA HCCCCCCCEEECCCHHHHHHHHCCCCCCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHH QAVVKSFLPDYARNAHGNLVDQSRLVGVSRGADTTRPPQARNFEPNLDVARYERSSSAPE HHHHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC KGAKAALPAAATTAPIPAGTAGVMPLLQKNACVACHGMDSKLVGPSFREIAAKYKDHADA CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH VNYLSGKIRAGGQGVWGSMAMPAQSLSLAESAQLAQWLALGAKP HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SRSRSRLLPGAWRLTACACVWMLGVGASQAQSLPAPKRAAAQVSLAGAGISGIGRTATP CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHEEEEECCCCCCCCCCCCC AEIRAWDIDVRPDFKGLPKGQGSVRQGEVLWEAQCASCHGSFAESSDVFTPLVGGVTAQD CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHCCCCHHH IRAGRVDSLLPGANQPHRTTLMKLSTLSTLWDYINRAMPWNAPKTLTADEVYAATAYILH HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH LGNVLPADFTLSDSNIREVQDRLPNRHGMTTAHALWPGKELGGTARPDVQGLACMKDCKA HCCCCCCCEEECCCHHHHHHHHCCCCCCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHH QAVVKSFLPDYARNAHGNLVDQSRLVGVSRGADTTRPPQARNFEPNLDVARYERSSSAPE HHHHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC KGAKAALPAAATTAPIPAGTAGVMPLLQKNACVACHGMDSKLVGPSFREIAAKYKDHADA CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH VNYLSGKIRAGGQGVWGSMAMPAQSLSLAESAQLAQWLALGAKP HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1645652; 2536668; 2558725; 9657676 [H]