| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rlmN [H]
Identifier: 91788473
GI number: 91788473
Start: 2741693
End: 2742841
Strand: Reverse
Name: rlmN [H]
Synonym: Bpro_2611
Alternate gene names: 91788473
Gene position: 2742841-2741693 (Counterclockwise)
Preceding gene: 91788474
Following gene: 91788472
Centisome position: 52.74
GC content: 59.79
Gene sequence:
>1149_bases ATGACAGCCAACCTTCTTGACTACGATCTGGAGGGCTTGGCCGCCTTTTGCGAAGGGCTCGGCGAAAAGCGCTTTCGCGC AACCCAGCTGTTTCGCTGGATTCATCAAAAAGGCGCCTCTGATTTTGGGCAGATGACAGATCTGGCCAGATCGCTGCGTG AAAAACTCGCCGGTTCGGCCCATATCCAGGGGCCGAAAGTGGTGTCCCGTCACGACTCGGCAGACGGCACCATCAAATGG CTGTTCGATGTTGGCGCCGGTGACGTCATTGAAGCCGTTTTCATCCCCGAAACGGATCGGGGAACCCTGTGCATTTCATC CCAGGCCGGCTGCGCCGTGGGGTGCCGGTTCTGCTCGACCGGGCACCAGGGCTTCAGCCGCAACCTCACTACGGGGGAAA TTGTCTCCCAGCTGTGGTTTGCAGAGCATTTCCTGCGCCAGCACCTGGGCCGGCAGGAGCGTGTGATTTCGAATGTGGTC ATGATGGGCATGGGCGAGCCCTTGCAGAACTACTCGCAACTGGTACCCGCGTTGCGGGTCATGCTGGATGACCATGGTTA CGGTTTGTCGCGTCGCCGTGTGACAGTGTCGACGTCGGGCGTCGTGCCCATGATCGACAGGCTGGCCAAGGACTGTCCGG TGGCGCTGGCTGTGTCGTTGCACGCTCCGCAAGACGCGCTGCGCGACAGCCTGGTGCCACTCAATAAAAAATACCCGATC GCTGAATTGCTGCAGGCCTGCACCCGCTATCAGGCGTCTGCGCCGCGTGACTTCATCACGTTTGAGTACTGCATGCTTGA CGGGGTGAATGACCAGCCCGAACATGCGCGCCAGCTGGTGGCGCTGATGCAAAATCATTCGGCAGGTGGCCTGTCGTGCA AATTCAACCTGATTCCTTTCAATCCGTTTCCGGCGTCGGGCCTGAAGCGTTCAGCCATGCCGCAGGTTGCCGCCTTCGCC AAAATCCTGATGGATGCGGGCATCGTGACCACGGTGCGTAAGACCCGCGGTGATGACATTGACGCGGCCTGTGGTCAACT CGCTGGCGATGTTCAGGACCGGACCAGCGTAGACCGGCGCATCGCGGCGCAACGGCAAGGTATGCTCGGCGGCATCAAAG TGGTTGTTGCAAAGGGGATGGATGTATGA
Upstream 100 bases:
>100_bases ATGAATATTTACTCGCGTTAATCATGCTGCCCCCCATGCGTTGCTACTCCCCGCCAGGGTCGTCGCTTGCCTGGGGCGGT CCAGCCTGTCGCCCTCTGCA
Downstream 100 bases:
>100_bases GGTTTTCCGGCAATGTGATCTGCATGTCAGCCTGCTGGGTGGCTGTGTTACTGGCAGGGTGTGCCGGCCAGCAAGGAATG TCCGGGCCCTCCGGTAACCG
Product: hypothetical protein
Products: NA
Alternate protein names: 23S rRNA m2A2503 methyltransferase [H]
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MTANLLDYDLEGLAAFCEGLGEKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSAHIQGPKVVSRHDSADGTIKW LFDVGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQERVISNVV MMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKKYPI AELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNLIPFNPFPASGLKRSAMPQVAAFA KILMDAGIVTTVRKTRGDDIDAACGQLAGDVQDRTSVDRRIAAQRQGMLGGIKVVVAKGMDV
Sequences:
>Translated_382_residues MTANLLDYDLEGLAAFCEGLGEKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSAHIQGPKVVSRHDSADGTIKW LFDVGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQERVISNVV MMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKKYPI AELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNLIPFNPFPASGLKRSAMPQVAAFA KILMDAGIVTTVRKTRGDDIDAACGQLAGDVQDRTSVDRRIAAQRQGMLGGIKVVVAKGMDV >Mature_381_residues TANLLDYDLEGLAAFCEGLGEKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSAHIQGPKVVSRHDSADGTIKWL FDVGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQERVISNVVM MGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKKYPIA ELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNLIPFNPFPASGLKRSAMPQVAAFAK ILMDAGIVTTVRKTRGDDIDAACGQLAGDVQDRTSVDRRIAAQRQGMLGGIKVVVAKGMDV
Specific function: Specifically methylates position 2 of adenine 2503 in 23S rRNA [H]
COG id: COG0820
COG function: function code R; Predicted Fe-S-cluster redox enzyme
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the radical SAM superfamily. RlmN family [H]
Homologues:
Organism=Escherichia coli, GI1788865, Length=374, Percent_Identity=51.6042780748663, Blast_Score=379, Evalue=1e-106,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007197 - InterPro: IPR004383 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: =2.1.1.192 [H]
Molecular weight: Translated: 41678; Mature: 41547
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTANLLDYDLEGLAAFCEGLGEKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSA CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC HIQGPKVVSRHDSADGTIKWLFDVGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCST CCCCCCHHCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHC GHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQERVISNVVMMGMGEPLQNYSQLVPALRV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH MLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKKYPI HHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCCCCCCH AELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNLIPF HHHHHHHHHHHCCCCCCHHEEHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEC NPFPASGLKRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAACGQLAGDVQDRTSVDRR CCCCCCCCCHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH IAAQRQGMLGGIKVVVAKGMDV HHHHHCCCCCCCEEEEECCCCC >Mature Secondary Structure TANLLDYDLEGLAAFCEGLGEKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSA CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC HIQGPKVVSRHDSADGTIKWLFDVGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCST CCCCCCHHCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHC GHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQERVISNVVMMGMGEPLQNYSQLVPALRV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH MLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKKYPI HHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCCCCCCH AELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNLIPF HHHHHHHHHHHCCCCCCHHEEHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEC NPFPASGLKRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAACGQLAGDVQDRTSVDRR CCCCCCCCCHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH IAAQRQGMLGGIKVVVAKGMDV HHHHHCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA