Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is livJ [C]

Identifier: 91788440

GI number: 91788440

Start: 2699296

End: 2700531

Strand: Reverse

Name: livJ [C]

Synonym: Bpro_2578

Alternate gene names: 91788440

Gene position: 2700531-2699296 (Counterclockwise)

Preceding gene: 91788441

Following gene: 91788439

Centisome position: 51.93

GC content: 55.99

Gene sequence:

>1236_bases
ATGAAAAATGTCATTCGTGTCGTTGCTGTTTGTGCGGTATTGGCCTGTTCAGGCGCGACCTGGGCCCAAAAAGGCGAGAC
CGTCAGGATCGCCCTGATTGAAGGCCTGTCCGGCTCGTTTGGCAACGTCGGCCAGAATCAACTTAAAAGTTGGCAGTTCC
TGGCAGAAAACCTTAACGCGGCAAACAACGTAGCGGGTGTCAAGTTTGAAATTGTCGGCATGGACAGCAAGGGCTCGCCC
CAGGAGGCGCTCAACACTTTCAAGGCGGCGGTCGATCAGGGCTTTCGCTACATCGCGCAAGGCAACGGTTCAGGCGCGGC
TCTGGCCCTGTCTGATGCGGTGGCCAAGCACAATGAGCGTAATCCGGGCAAAGAGGTGGTGTACCTGAATTACGCCGCAG
TAGATCCGGCGCTGACCAACGAAAAATGCAACTACTGGCATTTCAGGCTGGATGCCGACACCTCCCAGAAAATGGAAGCG
CTGACCAGCTTCATGAAAGACCAGTCCATGGTCAAGAAGGTCTATCTGCTCAACCAGAACTATTCCCACGGACAGCAGGT
GGCCAAGTATTTCAAGGAAGGCATGGCCCGCAAGCGGCCTGACTCATCGATTGTGGGTGATGATCTGGTGCCGCTTGGGC
AGGTCAAGGACTTTTCCCCCTATGTCGCCAAGATCAAGCAGTCGGGTGCCGACACCATCGTCACCGGCAACTGGGGTGCT
GACCTGACCCTGTTCGTCAAGGCATTGAACGACGCGGGGCTCAAGCTGCCCCTGTACACCTACTATGCAGCCGTGTCGGG
CACGCCGACGGTATTGGCCGCCGGCGGCGAAACCGAGGTTTACCAGATTTCGTATGGCCATTCCAACCACACTGGAGCGC
TGGCCAAACTCACGAGTGACTATCAGAAGAAGTTTGGCGACGACTTCTACACCTACTCCATCTACAACGGCATCCTGCTG
ATGAGCGAGGCCATGGCCAAGGCGAAATCCACTGACCCGGTCAAGGTGGCCGCGGTCATGAACGGTTTGCGTTTCAAGGG
CTTCAACGGCGATTCCGAGATGCGCAAATCGGACAACCAGATGCAGCAGGGCCTTTACATCTCCAAATGGCAGAAGGTCG
ACAAGAAGTATCCATACAGCGTGGAAAAAACAGGCTATACCTTTGCGCCGGTCAAGTACATCGAATCCTATGTGGCCAGC
ACCCCCACCAGCTGCCAGATGAAACGCCCCTCCTGA

Upstream 100 bases:

>100_bases
GCGCTGTCACCTAGGCGATATGTCCTGCGGACAACCCCTAGCGTTGGCAATTCGAATTACTTGTACGCTGCAAAGCTTGT
GAATTAAAGGAGACTGGATC

Downstream 100 bases:

>100_bases
GGCATCCACTACGACTGACACCAGGTGACCCCACGGCCACCCTGGTGTTTCCTGTTGCCTGATTCCCGTTGGCGTTGATT
CATGCTCGATTTCCTCACAT

Product: extracellular ligand-binding receptor

Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MKNVIRVVAVCAVLACSGATWAQKGETVRIALIEGLSGSFGNVGQNQLKSWQFLAENLNAANNVAGVKFEIVGMDSKGSP
QEALNTFKAAVDQGFRYIAQGNGSGAALALSDAVAKHNERNPGKEVVYLNYAAVDPALTNEKCNYWHFRLDADTSQKMEA
LTSFMKDQSMVKKVYLLNQNYSHGQQVAKYFKEGMARKRPDSSIVGDDLVPLGQVKDFSPYVAKIKQSGADTIVTGNWGA
DLTLFVKALNDAGLKLPLYTYYAAVSGTPTVLAAGGETEVYQISYGHSNHTGALAKLTSDYQKKFGDDFYTYSIYNGILL
MSEAMAKAKSTDPVKVAAVMNGLRFKGFNGDSEMRKSDNQMQQGLYISKWQKVDKKYPYSVEKTGYTFAPVKYIESYVAS
TPTSCQMKRPS

Sequences:

>Translated_411_residues
MKNVIRVVAVCAVLACSGATWAQKGETVRIALIEGLSGSFGNVGQNQLKSWQFLAENLNAANNVAGVKFEIVGMDSKGSP
QEALNTFKAAVDQGFRYIAQGNGSGAALALSDAVAKHNERNPGKEVVYLNYAAVDPALTNEKCNYWHFRLDADTSQKMEA
LTSFMKDQSMVKKVYLLNQNYSHGQQVAKYFKEGMARKRPDSSIVGDDLVPLGQVKDFSPYVAKIKQSGADTIVTGNWGA
DLTLFVKALNDAGLKLPLYTYYAAVSGTPTVLAAGGETEVYQISYGHSNHTGALAKLTSDYQKKFGDDFYTYSIYNGILL
MSEAMAKAKSTDPVKVAAVMNGLRFKGFNGDSEMRKSDNQMQQGLYISKWQKVDKKYPYSVEKTGYTFAPVKYIESYVAS
TPTSCQMKRPS
>Mature_411_residues
MKNVIRVVAVCAVLACSGATWAQKGETVRIALIEGLSGSFGNVGQNQLKSWQFLAENLNAANNVAGVKFEIVGMDSKGSP
QEALNTFKAAVDQGFRYIAQGNGSGAALALSDAVAKHNERNPGKEVVYLNYAAVDPALTNEKCNYWHFRLDADTSQKMEA
LTSFMKDQSMVKKVYLLNQNYSHGQQVAKYFKEGMARKRPDSSIVGDDLVPLGQVKDFSPYVAKIKQSGADTIVTGNWGA
DLTLFVKALNDAGLKLPLYTYYAAVSGTPTVLAAGGETEVYQISYGHSNHTGALAKLTSDYQKKFGDDFYTYSIYNGILL
MSEAMAKAKSTDPVKVAAVMNGLRFKGFNGDSEMRKSDNQMQQGLYISKWQKVDKKYPYSVEKTGYTFAPVKYIESYVAS
TPTSCQMKRPS

Specific function: Component of an amino-acid transport system (Potential) [H]

COG id: COG0683

COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the leucine-binding protein family [H]

Homologues:

Organism=Escherichia coli, GI48994941, Length=249, Percent_Identity=21.6867469879518, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000709 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44945; Mature: 44945

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVIRVVAVCAVLACSGATWAQKGETVRIALIEGLSGSFGNVGQNQLKSWQFLAENLNA
CCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC
ANNVAGVKFEIVGMDSKGSPQEALNTFKAAVDQGFRYIAQGNGSGAALALSDAVAKHNER
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCEEEEHHHHHHHCCCC
NPGKEVVYLNYAAVDPALTNEKCNYWHFRLDADTSQKMEALTSFMKDQSMVKKVYLLNQN
CCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
YSHGQQVAKYFKEGMARKRPDSSIVGDDLVPLGQVKDFSPYVAKIKQSGADTIVTGNWGA
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC
DLTLFVKALNDAGLKLPLYTYYAAVSGTPTVLAAGGETEVYQISYGHSNHTGALAKLTSD
CHHHHHHHHCCCCCCCCHHHHEEECCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
YQKKFGDDFYTYSIYNGILLMSEAMAKAKSTDPVKVAAVMNGLRFKGFNGDSEMRKSDNQ
HHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCEEECCCCCHHHHHHHHH
MQQGLYISKWQKVDKKYPYSVEKTGYTFAPVKYIESYVASTPTSCQMKRPS
HHHCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKNVIRVVAVCAVLACSGATWAQKGETVRIALIEGLSGSFGNVGQNQLKSWQFLAENLNA
CCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC
ANNVAGVKFEIVGMDSKGSPQEALNTFKAAVDQGFRYIAQGNGSGAALALSDAVAKHNER
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCEEEEHHHHHHHCCCC
NPGKEVVYLNYAAVDPALTNEKCNYWHFRLDADTSQKMEALTSFMKDQSMVKKVYLLNQN
CCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
YSHGQQVAKYFKEGMARKRPDSSIVGDDLVPLGQVKDFSPYVAKIKQSGADTIVTGNWGA
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC
DLTLFVKALNDAGLKLPLYTYYAAVSGTPTVLAAGGETEVYQISYGHSNHTGALAKLTSD
CHHHHHHHHCCCCCCCCHHHHEEECCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
YQKKFGDDFYTYSIYNGILLMSEAMAKAKSTDPVKVAAVMNGLRFKGFNGDSEMRKSDNQ
HHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCEEECCCCCHHHHHHHHH
MQQGLYISKWQKVDKKYPYSVEKTGYTFAPVKYIESYVASTPTSCQMKRPS
HHHCCHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA