| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is livM [H]
Identifier: 91788438
GI number: 91788438
Start: 2696932
End: 2698224
Strand: Reverse
Name: livM [H]
Synonym: Bpro_2576
Alternate gene names: 91788438
Gene position: 2698224-2696932 (Counterclockwise)
Preceding gene: 91788439
Following gene: 91788437
Centisome position: 51.89
GC content: 57.08
Gene sequence:
>1293_bases ATGACACGGCAGTTTTACCAATTCAAACCCCTCAATGTTGGGCGTTTTCTGTTGTGGTCTCTTTTTGCACTGGTGCTGGC ACTGGCTCCGCTGGTCTTTACTTCCAGCCTGAGCCACACCATTTTGAGCCAGATGGGTATCGCCATCATTGTTTGTCTGA GCTACAACATCCTGCTGGGGCAGGGTGGGATGCTGAGCTTCGGCCATGCCGTTTATTCCGGGATGGGCTCCTTCCTGGCG ATTCACACGCTAAACAAGATCAGCAGCGGGGCACTTGGGGTGCCCGTGAGCCTGATTCCCATTGCAGGAGGGCTGGCCAG CATGCTGGTGGCCGTGGTGCTCGGCTGGGTCACCACCAAAAAATCGGGCACCACGTTTGCCATGATCACCCTCGGTGTGG GTGAACTGATCTGGGCGATGTCGCTGATGTTCCCCGAGTTCTTTGGCGGGGAGGGGGGAGTGTCGGGCAACCGGGTGACA GGCGCTAAAGTCTGGGGCATCACCTACGGCCCGCAGGTACAGCTGTACTACCTGATCGCCGCCTACACCCTGGTCTGTAC AGCGCTCATGTTCGCTTTCACGCGCACCCCGCTGGGCCGCATGCTCAACGCGGTACGCGACAACCCGGAACGCGTCGAAT TCGTGGGTTATGACACGCAGAAAGTACGGTACTTTTCCTTTATCGTGGCGGCTTTTTTCGCAGGCATTTCGGGTGGCCTG GCTGCGCTTAATTTTGAAATCGTCACATCTGAGGTGGTCAGCGGGTATCGCTCGGGGGCGTATTTGCTGTTCACATTTTT AGGGGGTGCGACTTTTTTCTTCGGGCCGATCATTGGTGCCGTTCTCATGGTGCTGGCTTTTGTCCTGTTGTCGGAGTTCA CGAAGGCATGGCTGCTGTACCTCGGTTTGATTTTCCTGTTCATGGTGATGTACGCGCCGGGAGGGGTGGCGTCGCTCATC ATGATGAATCTGCGGGTGGCCGTCTTTGGTCACCTGCGAAAACTCTGGGTCGGCTATCTGGCGTTGGCGCTGACGGCGCT GGTGGTGCTGATAGGCGCTGCGGCGATGATCGAGATGATTTACCACCTGCAACTCAATGCTGCGCTTGGTCCGGAGTTGA CCTTCCTGGGTGCCCGGCTTGACTCCAGAGGGCTGAACAGCTGGATTGGCGCCTTGTTTGTGACGTTAACGGGCTTGGGT CTGTTTGAAGTCTGTCGCCGTCAGTTCGCCCGGGAGTGGGACCAGATTCAGCAAAGCATAGAAAAAGAGATCAAGCGCAG GGAGACGCTGTGA
Upstream 100 bases:
>100_bases GCTCAAGATAAGCCAAGTAGCACCCATCCTGCCCTATCTGTTACTGGTCCTGATGCTGACATTTCGGCCCAAAGGCCTTC TGGGCACGCGGGAGGGCTAA
Downstream 100 bases:
>100_bases CGTTCACTACCAACCAAACAGCAGCCAAAAGCTCCAGCATGGACCGCAATGCCGGGCCGTTCCAAGGTGAAATACCCCCC TCGGAGGGCGGCGCAGTGCG
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein M [H]
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MTRQFYQFKPLNVGRFLLWSLFALVLALAPLVFTSSLSHTILSQMGIAIIVCLSYNILLGQGGMLSFGHAVYSGMGSFLA IHTLNKISSGALGVPVSLIPIAGGLASMLVAVVLGWVTTKKSGTTFAMITLGVGELIWAMSLMFPEFFGGEGGVSGNRVT GAKVWGITYGPQVQLYYLIAAYTLVCTALMFAFTRTPLGRMLNAVRDNPERVEFVGYDTQKVRYFSFIVAAFFAGISGGL AALNFEIVTSEVVSGYRSGAYLLFTFLGGATFFFGPIIGAVLMVLAFVLLSEFTKAWLLYLGLIFLFMVMYAPGGVASLI MMNLRVAVFGHLRKLWVGYLALALTALVVLIGAAAMIEMIYHLQLNAALGPELTFLGARLDSRGLNSWIGALFVTLTGLG LFEVCRRQFAREWDQIQQSIEKEIKRRETL
Sequences:
>Translated_430_residues MTRQFYQFKPLNVGRFLLWSLFALVLALAPLVFTSSLSHTILSQMGIAIIVCLSYNILLGQGGMLSFGHAVYSGMGSFLA IHTLNKISSGALGVPVSLIPIAGGLASMLVAVVLGWVTTKKSGTTFAMITLGVGELIWAMSLMFPEFFGGEGGVSGNRVT GAKVWGITYGPQVQLYYLIAAYTLVCTALMFAFTRTPLGRMLNAVRDNPERVEFVGYDTQKVRYFSFIVAAFFAGISGGL AALNFEIVTSEVVSGYRSGAYLLFTFLGGATFFFGPIIGAVLMVLAFVLLSEFTKAWLLYLGLIFLFMVMYAPGGVASLI MMNLRVAVFGHLRKLWVGYLALALTALVVLIGAAAMIEMIYHLQLNAALGPELTFLGARLDSRGLNSWIGALFVTLTGLG LFEVCRRQFAREWDQIQQSIEKEIKRRETL >Mature_429_residues TRQFYQFKPLNVGRFLLWSLFALVLALAPLVFTSSLSHTILSQMGIAIIVCLSYNILLGQGGMLSFGHAVYSGMGSFLAI HTLNKISSGALGVPVSLIPIAGGLASMLVAVVLGWVTTKKSGTTFAMITLGVGELIWAMSLMFPEFFGGEGGVSGNRVTG AKVWGITYGPQVQLYYLIAAYTLVCTALMFAFTRTPLGRMLNAVRDNPERVEFVGYDTQKVRYFSFIVAAFFAGISGGLA ALNFEIVTSEVVSGYRSGAYLLFTFLGGATFFFGPIIGAVLMVLAFVLLSEFTKAWLLYLGLIFLFMVMYAPGGVASLIM MNLRVAVFGHLRKLWVGYLALALTALVVLIGAAAMIEMIYHLQLNAALGPELTFLGARLDSRGLNSWIGALFVTLTGLGL FEVCRRQFAREWDQIQQSIEKEIKRRETL
Specific function: Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=301, Percent_Identity=26.578073089701, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 46812; Mature: 46681
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQFYQFKPLNVGRFLLWSLFALVLALAPLVFTSSLSHTILSQMGIAIIVCLSYNILLG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC QGGMLSFGHAVYSGMGSFLAIHTLNKISSGALGVPVSLIPIAGGLASMLVAVVLGWVTTK CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCC KSGTTFAMITLGVGELIWAMSLMFPEFFGGEGGVSGNRVTGAKVWGITYGPQVQLYYLIA CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHH AYTLVCTALMFAFTRTPLGRMLNAVRDNPERVEFVGYDTQKVRYFSFIVAAFFAGISGGL HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCH AALNFEIVTSEVVSGYRSGAYLLFTFLGGATFFFGPIIGAVLMVLAFVLLSEFTKAWLLY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGLIFLFMVMYAPGGVASLIMMNLRVAVFGHLRKLWVGYLALALTALVVLIGAAAMIEMI HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YHLQLNAALGPELTFLGARLDSRGLNSWIGALFVTLTGLGLFEVCRRQFAREWDQIQQSI HHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH EKEIKRRETL HHHHHHHCCC >Mature Secondary Structure TRQFYQFKPLNVGRFLLWSLFALVLALAPLVFTSSLSHTILSQMGIAIIVCLSYNILLG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC QGGMLSFGHAVYSGMGSFLAIHTLNKISSGALGVPVSLIPIAGGLASMLVAVVLGWVTTK CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCC KSGTTFAMITLGVGELIWAMSLMFPEFFGGEGGVSGNRVTGAKVWGITYGPQVQLYYLIA CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHH AYTLVCTALMFAFTRTPLGRMLNAVRDNPERVEFVGYDTQKVRYFSFIVAAFFAGISGGL HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCH AALNFEIVTSEVVSGYRSGAYLLFTFLGGATFFFGPIIGAVLMVLAFVLLSEFTKAWLLY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGLIFLFMVMYAPGGVASLIMMNLRVAVFGHLRKLWVGYLALALTALVVLIGAAAMIEMI HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YHLQLNAALGPELTFLGARLDSRGLNSWIGALFVTLTGLGLFEVCRRQFAREWDQIQQSI HHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH EKEIKRRETL HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]