Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91788418

Identifier: 91788418

GI number: 91788418

Start: 2677361

End: 2678338

Strand: Direct

Name: 91788418

Synonym: Bpro_2556

Alternate gene names: NA

Gene position: 2677361-2678338 (Clockwise)

Preceding gene: 91788417

Following gene: 91788419

Centisome position: 51.49

GC content: 59.61

Gene sequence:

>978_bases
ATGGACTATCTCTACTACCTTTTTGCCACGCTGATTTTCATTGCGGTGGTCCTTCTGGTTGAGGGCCTGTACCTCAGCTG
GAACTCTACCAAGGGGCCTGAAGCCGAGCGTGTGGCGCGTCGCCTGCGCGTCATGTCGGCGGGCGGACACGGTGATGCGC
AAAGTATTTCCATTACCAAGGAACGACTGCTGAGCGAAACGCCAGTCATGCAGCGCATTTTGCTGGGGGTTCCGCGCGTT
GGCACGCTGGACCGCCTGCTCCAGCAGTCAGGGCTGTCCTGGAGTGTGGGCGAATTCCTCGGAATGGCATTGATTGCCTT
CCTGGTTGTTTTCTTTGCAGGCAGTTACCTTGCCGTGCCCTTGCTGCTGCGGCTGGCGCTGGCGGGCGCTGCTGCCCTGC
TCCCATTTCTTTATGTCACGAGAGCCAAGCGCAAGCGTCTGGATCGCATCGAGCACCAACTGCCTGATGCGCTGGACTTG
ATGGGCCGCGCCTTGCGCGCCGGCCACGCCTTTCCGACGGCGCTGAAGATGGTGGGCGACGAGATGAACGACCCCTTGGC
CGGAGAATTTCGCATCGCTTTTGACGAGGTGAACTTTGGCATTGCCATGCCGGATGCCCTGATGAACATGGCCACGCGGG
TACCCAGCACCGATCTGCGCTACTTTGTGATTGCCGTGCTGATCCAGCGGGAAACGGGCGGCAATCTTTCAGAATTGTTA
ACGAGTATCAGCGCCATCATCCGGGACCGGATCAAGCTGATGGGGCAGGTACGGGTGCTGTCTGCCGAGGGCAAGATGTC
AGCCTGGGTGCTGTCTCTGCTGCCGTTCGGAGCGGCATTCATGATCCAGCTGACGAACCCCAAGTTTCTTGAGGTGCTGT
ATACCGACCCCGCAGGCCGCAAGATGCTCGCCGCCGCCATCGTCATGATGGCGCTCGGCATCCTGGTCATGCGCAAGATC
ATTCGAATCCGGGTGTGA

Upstream 100 bases:

>100_bases
GAGGCTGCAGGCGTTTGGTATCAGCGTTTCAGACAAACTGTTTGACCCCACACGGCAGTATCACTGAGCAGTATCACTGA
GGCAGCACCACTGAACGACC

Downstream 100 bases:

>100_bases
TGTGAACAAACCAGATCTTTCAGGAGCCAAAGCGCCATGACCACTCTTCAACTTGCGTTTCTGGGGCTGATTTTTGTGGC
TGTTTTCGGTGTCGTCATGC

Product: type II secretion system protein

Products: NA

Alternate protein names: Flp Pilus Assembly Protein TadB; Type II Secretion System F Domain Protein; Pilus Assembly Protein; Integral Membrane Protein; Flp Pilus Assembly Protein; Type II Secretion System F Domain-Containing Protein; Bacterial Type II Secretion System Protein F Domain; Pilus Assembly Protein TadB; Type II/IV Secretion System Protein TadC Subfamily; TadB Protein; Type II Secretion System Protein F; Type II Secretion System F Domain; Type II Secretion System; Type II Secretion System Protein F Domain; Tad Secretion System Pilus Assembly Protein; Secretion System Protein; Flp Pilus Assembly Protein Tadb; Secretion System Protein TadB; Sercretion System Protein; Tight Adherence TadB-Related Transmembrane Protein; Bacterial Type II Secretion System Protein F Domain Protein; Bacterial Type II Secretion System Protein F; Flp Pilus Assembly Protein TadC; TadB-Like Pilus Assembly Protein; Type II Secretion System F Protein; Type II/IV Secretion System Membrane Protein; Tad Secretion System Secretion Accessory Protein; Component Of Type IV Pilus; Type II Secretion System Integral Membrane Subunit; Tight Adherence TadB-Like Transmembrane Protein; Components Of Type IV Pilus; TadC Family Type II/IV Secretion System Protein

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITKERLLSETPVMQRILLGVPRV
GTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVPLLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDL
MGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL
TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI
IRIRV

Sequences:

>Translated_325_residues
MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITKERLLSETPVMQRILLGVPRV
GTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVPLLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDL
MGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL
TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI
IRIRV
>Mature_325_residues
MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITKERLLSETPVMQRILLGVPRV
GTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVPLLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDL
MGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL
TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI
IRIRV

Specific function: Unknown

COG id: COG4965

COG function: function code U; Flp pilus assembly protein TadB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35883; Mature: 35883

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITK
CHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
ERLLSETPVMQRILLGVPRVGTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVP
HHHHHHCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
EMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL
HCCCCCCCCEEEEEECCCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH
TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGR
HHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCH
KMLAAAIVMMALGILVMRKIIRIRV
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITK
CHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
ERLLSETPVMQRILLGVPRVGTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVP
HHHHHHCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
EMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL
HCCCCCCCCEEEEEECCCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH
TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGR
HHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCH
KMLAAAIVMMALGILVMRKIIRIRV
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA