| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788418
Identifier: 91788418
GI number: 91788418
Start: 2677361
End: 2678338
Strand: Direct
Name: 91788418
Synonym: Bpro_2556
Alternate gene names: NA
Gene position: 2677361-2678338 (Clockwise)
Preceding gene: 91788417
Following gene: 91788419
Centisome position: 51.49
GC content: 59.61
Gene sequence:
>978_bases ATGGACTATCTCTACTACCTTTTTGCCACGCTGATTTTCATTGCGGTGGTCCTTCTGGTTGAGGGCCTGTACCTCAGCTG GAACTCTACCAAGGGGCCTGAAGCCGAGCGTGTGGCGCGTCGCCTGCGCGTCATGTCGGCGGGCGGACACGGTGATGCGC AAAGTATTTCCATTACCAAGGAACGACTGCTGAGCGAAACGCCAGTCATGCAGCGCATTTTGCTGGGGGTTCCGCGCGTT GGCACGCTGGACCGCCTGCTCCAGCAGTCAGGGCTGTCCTGGAGTGTGGGCGAATTCCTCGGAATGGCATTGATTGCCTT CCTGGTTGTTTTCTTTGCAGGCAGTTACCTTGCCGTGCCCTTGCTGCTGCGGCTGGCGCTGGCGGGCGCTGCTGCCCTGC TCCCATTTCTTTATGTCACGAGAGCCAAGCGCAAGCGTCTGGATCGCATCGAGCACCAACTGCCTGATGCGCTGGACTTG ATGGGCCGCGCCTTGCGCGCCGGCCACGCCTTTCCGACGGCGCTGAAGATGGTGGGCGACGAGATGAACGACCCCTTGGC CGGAGAATTTCGCATCGCTTTTGACGAGGTGAACTTTGGCATTGCCATGCCGGATGCCCTGATGAACATGGCCACGCGGG TACCCAGCACCGATCTGCGCTACTTTGTGATTGCCGTGCTGATCCAGCGGGAAACGGGCGGCAATCTTTCAGAATTGTTA ACGAGTATCAGCGCCATCATCCGGGACCGGATCAAGCTGATGGGGCAGGTACGGGTGCTGTCTGCCGAGGGCAAGATGTC AGCCTGGGTGCTGTCTCTGCTGCCGTTCGGAGCGGCATTCATGATCCAGCTGACGAACCCCAAGTTTCTTGAGGTGCTGT ATACCGACCCCGCAGGCCGCAAGATGCTCGCCGCCGCCATCGTCATGATGGCGCTCGGCATCCTGGTCATGCGCAAGATC ATTCGAATCCGGGTGTGA
Upstream 100 bases:
>100_bases GAGGCTGCAGGCGTTTGGTATCAGCGTTTCAGACAAACTGTTTGACCCCACACGGCAGTATCACTGAGCAGTATCACTGA GGCAGCACCACTGAACGACC
Downstream 100 bases:
>100_bases TGTGAACAAACCAGATCTTTCAGGAGCCAAAGCGCCATGACCACTCTTCAACTTGCGTTTCTGGGGCTGATTTTTGTGGC TGTTTTCGGTGTCGTCATGC
Product: type II secretion system protein
Products: NA
Alternate protein names: Flp Pilus Assembly Protein TadB; Type II Secretion System F Domain Protein; Pilus Assembly Protein; Integral Membrane Protein; Flp Pilus Assembly Protein; Type II Secretion System F Domain-Containing Protein; Bacterial Type II Secretion System Protein F Domain; Pilus Assembly Protein TadB; Type II/IV Secretion System Protein TadC Subfamily; TadB Protein; Type II Secretion System Protein F; Type II Secretion System F Domain; Type II Secretion System; Type II Secretion System Protein F Domain; Tad Secretion System Pilus Assembly Protein; Secretion System Protein; Flp Pilus Assembly Protein Tadb; Secretion System Protein TadB; Sercretion System Protein; Tight Adherence TadB-Related Transmembrane Protein; Bacterial Type II Secretion System Protein F Domain Protein; Bacterial Type II Secretion System Protein F; Flp Pilus Assembly Protein TadC; TadB-Like Pilus Assembly Protein; Type II Secretion System F Protein; Type II/IV Secretion System Membrane Protein; Tad Secretion System Secretion Accessory Protein; Component Of Type IV Pilus; Type II Secretion System Integral Membrane Subunit; Tight Adherence TadB-Like Transmembrane Protein; Components Of Type IV Pilus; TadC Family Type II/IV Secretion System Protein
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITKERLLSETPVMQRILLGVPRV GTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVPLLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDL MGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI IRIRV
Sequences:
>Translated_325_residues MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITKERLLSETPVMQRILLGVPRV GTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVPLLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDL MGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI IRIRV >Mature_325_residues MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITKERLLSETPVMQRILLGVPRV GTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVPLLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDL MGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI IRIRV
Specific function: Unknown
COG id: COG4965
COG function: function code U; Flp pilus assembly protein TadB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35883; Mature: 35883
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITK CHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH ERLLSETPVMQRILLGVPRVGTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVP HHHHHHCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH EMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL HCCCCCCCCEEEEEECCCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGR HHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCH KMLAAAIVMMALGILVMRKIIRIRV HHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDYLYYLFATLIFIAVVLLVEGLYLSWNSTKGPEAERVARRLRVMSAGGHGDAQSISITK CHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH ERLLSETPVMQRILLGVPRVGTLDRLLQQSGLSWSVGEFLGMALIAFLVVFFAGSYLAVP HHHHHHCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LLLRLALAGAAALLPFLYVTRAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH EMNDPLAGEFRIAFDEVNFGIAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELL HCCCCCCCCEEEEEECCCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH TSISAIIRDRIKLMGQVRVLSAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGR HHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCH KMLAAAIVMMALGILVMRKIIRIRV HHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA