| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788408
Identifier: 91788408
GI number: 91788408
Start: 2667190
End: 2667768
Strand: Direct
Name: 91788408
Synonym: Bpro_2546
Alternate gene names: NA
Gene position: 2667190-2667768 (Clockwise)
Preceding gene: 91788407
Following gene: 91788409
Centisome position: 51.29
GC content: 57.69
Gene sequence:
>579_bases ATGACCCACGACGGATTACTACACTTTGGTGGAATTCAAATCCACGTCATAGCCGCCGTATTGCTGGTATTGGTCGCTGT TGCGGCTGGGTTCGACCTCAAGTCACGGCGTATTCCTAACTGGCTTGTGCTCATGGGGTTGATCACGAGCTTGGCCCTCC AAATTATTTTCAGCGGCATCGGCGGCTTCAAGGCCTGGGGCTTGGGGCTGCTGGTCGGATTCGGGGTGTTTCTGCCCCTG TATCTGTTGCGCGCCATGGGCGCGGGTGACGTGAAACTCATGGCCATGGTCGGTGCCTTTCTCGGGCCGGTCTCAGCCCT GGGTGCGGTGCTGACAACGCTCGTCGTCGGCGGGGCGCTTGCCATTGCCGTGGCGCTGCGGTGTGGCATTTTAAAAAATA CCCTGAAAAATATTCGGTTCGCACTGACGCTGGCGCTGTACAAAGGCTTGTCCGGTGGTGGGATGCAGTTAGAGCAGCCG TCGACCTCAGCAGGCAACCTGCCCTATGCGGTGGCGATTGCTGTAGGCACCTTGGGTCATCTTCTTTTAGTGGGTAGTGG TCGTGCGGTGTTTGCTTGA
Upstream 100 bases:
>100_bases TTTATGGCGTTTGGTTTCGAACTGCGTGACTTTCGCGGCGACTGGTGCGGGTAGTTGTTCATAACTTTCTTACTAACCCA TCCAAATAAGAAAGACGATC
Downstream 100 bases:
>100_bases ATGGCCGCCAAAACAGCAAACCAGACCAGACCAGACCATAGGAGATTAAAAAATGATTGCCGAAGCCAATACAGAACACA CGGTGATTAGCCTCGACCCA
Product: peptidase A24A, prepilin type IV
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 191
Protein sequence:
>192_residues MTHDGLLHFGGIQIHVIAAVLLVLVAVAAGFDLKSRRIPNWLVLMGLITSLALQIIFSGIGGFKAWGLGLLVGFGVFLPL YLLRAMGAGDVKLMAMVGAFLGPVSALGAVLTTLVVGGALAIAVALRCGILKNTLKNIRFALTLALYKGLSGGGMQLEQP STSAGNLPYAVAIAVGTLGHLLLVGSGRAVFA
Sequences:
>Translated_192_residues MTHDGLLHFGGIQIHVIAAVLLVLVAVAAGFDLKSRRIPNWLVLMGLITSLALQIIFSGIGGFKAWGLGLLVGFGVFLPL YLLRAMGAGDVKLMAMVGAFLGPVSALGAVLTTLVVGGALAIAVALRCGILKNTLKNIRFALTLALYKGLSGGGMQLEQP STSAGNLPYAVAIAVGTLGHLLLVGSGRAVFA >Mature_191_residues THDGLLHFGGIQIHVIAAVLLVLVAVAAGFDLKSRRIPNWLVLMGLITSLALQIIFSGIGGFKAWGLGLLVGFGVFLPLY LLRAMGAGDVKLMAMVGAFLGPVSALGAVLTTLVVGGALAIAVALRCGILKNTLKNIRFALTLALYKGLSGGGMQLEQPS TSAGNLPYAVAIAVGTLGHLLLVGSGRAVFA
Specific function: Unknown
COG id: COG4960
COG function: function code OU; Flp pilus assembly protein, protease CpaA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19644; Mature: 19513
Theoretical pI: Translated: 10.88; Mature: 10.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHDGLLHFGGIQIHVIAAVLLVLVAVAAGFDLKSRRIPNWLVLMGLITSLALQIIFSGI CCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC GGFKAWGLGLLVGFGVFLPLYLLRAMGAGDVKLMAMVGAFLGPVSALGAVLTTLVVGGAL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIAVALRCGILKNTLKNIRFALTLALYKGLSGGGMQLEQPSTSAGNLPYAVAIAVGTLGH HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHH LLLVGSGRAVFA HHHCCCCCEECC >Mature Secondary Structure THDGLLHFGGIQIHVIAAVLLVLVAVAAGFDLKSRRIPNWLVLMGLITSLALQIIFSGI CCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC GGFKAWGLGLLVGFGVFLPLYLLRAMGAGDVKLMAMVGAFLGPVSALGAVLTTLVVGGAL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIAVALRCGILKNTLKNIRFALTLALYKGLSGGGMQLEQPSTSAGNLPYAVAIAVGTLGH HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHH LLLVGSGRAVFA HHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA