| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788397
Identifier: 91788397
GI number: 91788397
Start: 2652340
End: 2654637
Strand: Reverse
Name: 91788397
Synonym: Bpro_2535
Alternate gene names: NA
Gene position: 2654637-2652340 (Counterclockwise)
Preceding gene: 91788398
Following gene: 91788395
Centisome position: 51.05
GC content: 64.36
Gene sequence:
>2298_bases ATGAACCGTCCCGCAGTCGCGTTGTCCGGCGATCCGCCGCACCGTGAAGCAGCGCCGGGCCAGCAAGTTCGCGTACTGTG CGTGCTCTTTTTTTTCTCGGGTTTCCCGGCGCTGATCTACCAGTTGGTCTGGCAGCGCGCCTTGTTCCGCATCCTCGGCG TCAACATTGAATCGGTGACGATTGTAGTGACCGCATTCATGCTCGGCCTGGGCCTCGGCGGGCTGGCGGGCGGCTGGCTG TCGAAGCGCCAGGGCCTTCCGCTCCTGCTGCTGCTTGCTGCCATCGAGACGCTCACTGGCGCGTTCGGGCTGTTCTCACT GTCCATTTTCGAGCGTGTCGGCGACCTGGTCCTTGGTGCACCATTGCCGCTGACGGCGCTGGTAACGTTGTCCCTGGTGG TGGTGCCGACGCTGCTGATGGGCGCGACGCTGCCGCTGCTGGTGGGTCACCTGGTGCGGCGCTCCGGCAACGTCGGAAGT GCGGTTGGGCAACTCTACTATGTCAACACCCTGGGCGCAGGTGCTGCCTGCCTGGTGTGTGCGGTGCTGCTGTTCCCGTT GCTTGGCATGCAAAGCTCGGTACTGATTGCCGTGGCCTTCAACGCAGCGGTTGCGTTGGGGGCTGTCTCGGCGCATGAGG TTGATCGTCGCCGTGTACGTCGCGCGGTCGCGCAACCCGAGCCGTCGCCAGCAACTCTAGCACCTCGCACCAGCCTGCCG TTCGGGGTTGTGCTGGCGATGGCGGGCGCTGGGGGCCTTGTTTCGCTGTCGTACGAGATTTTCTTTTTTCGCGCTATGTC CTACGCCAGCGGAAGCAGTTCGTTCGCGTTCGCGACGACGCTGGGGGCCTTTCTGATCGGTCTGGCTTCCGGTGCCCGGC TGGGTGGCGAAGCCTGCGCGGGGCCGGGCGGCGAGGTGTTGATGCGCCGAATGCTGCGCGGCTTGCTCATCGCCAGCCTG GTGGGGTTCGCGTTCCTGCCCGTACTCACGCACCTGGCGTGGCTGAATGGCGGGATTCTCGGCGTGGGCCTGCTGCTCGT GTACCTGCTGGCGCGCCAATGGGGTCTGGTGTTGCCATGCCTGGCGCACCTCGGCGTTGCCGCCGACGCGCAGGCCGGCA TGCGAACCGGGCTGCTGTACCTTGCAAACATCCTTGGTGCCGCGTCGGGTTCGGTGCTGACGGGCTTTGTGCTGATGGAC CACCTGAGCTTGGTGGAAGTCGGTCAGTTGCTCGTCGTTGCGGGGCTGGGGTGCGCGCTTATCCTGGGCCTGGCGATCCC GACGTCGCGCCGCGCCAACCTCGGACGTGCGGGCTCTATTGCGCTGGCCGGTGGGCTGGCCGTGCTGACCCTGCCTTGGG CCAGCGACAAAGTGCTGGAGGCGCTTCAATGGAAAGGCGGACCCGAGGCCAAGGTCGCCTTCGCACAAGTCGTGGAAAAC CGCAGCGGTATCGTCACGGTCGATCGCTCGGGCACTGTCTATGGCAATGGGGCGTACGACGGTCACTTCAACGTCGATTT GATCCGGGATGTGAACGGCATCGTGCGCCCGTATGCGCTCAGCCTGTTCCATGCGGCGCCGCGCGAGGTGCTGATGATCG GGCTCGCGTCCGGCTCATGGGCTCAGGTTCTGGCCAACAACCCCGAGGTGACTTTGCTCACGATCGTCGAGATCAATCCA GGCTATGTGGGCCTCATAGCCGGCAACACCAGCGTCGCTTCGGTGCTGACCCATCCCAAGGTACGGCTGGTAACGGATGA CGGCCGCCGCTGGTTGAGGATGAATGCACATCGGCGCTTCGACGCGATCGTTATAAACACCACATTTCACTTCCGCGCCA ACGCGACGAACTTGCTGTCGGCCGACTTCCACGCGATCCTGAAGGAGCATCTGAACCCGAGGGGCGTCGTGTTCTACAAC ACCACCAACTCCAGCCGGGTTCAGCGCACAGGCTGTATGAGTTTCAATCACGGAGCGCGGTTTACCAACCACCTGCTGCT GTCGTCTACACCTATAGACTGGGACTTCATACGGTGGCGGCGCACGCTTGAAGCCTACCGCATCGATGGCCGGCCCATGC TCGACCTCTCACGCCCCGAGCACGCCCAGGGCCTGGAGCGGCTGATGGCGCTCGAAGGCCAAACGCAGCCAGATGCGGTG CACGCCCGGAGCGTGCCGGACGCCCCGGGCGACTGGATTGAGCCCTGCGCGCAGGTGTTGGCACGCACCGCCGGCCAGAC CCTCGTGACGGACGACAACATGGGCACCGAGTGGCGTTATTTTTGGGATAAGCAATGA
Upstream 100 bases:
>100_bases TGCTGGCCATCGGACTGATCGAGCTTGACCGTCGGCGCGGCGCGCGCCCCGCGATGGCCGTGAAGGCCCTGCCGGCGAGC GGGTTGGGAACCCTGCGCCG
Downstream 100 bases:
>100_bases GTACGGCAAAGGAGCACCCCTGGGGGTGTCTTGCCAATGACAGGCTAGCGGCTCTAAAAGTGCTCAAATAAGTCATACGA GCCATCAGTTTCTTGGGGCC
Product: putative spermidine synthase
Products: NA
Alternate protein names: Integral Membrane Protein; Inner Membrane Protein; Spermine Synthase
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues MNRPAVALSGDPPHREAAPGQQVRVLCVLFFFSGFPALIYQLVWQRALFRILGVNIESVTIVVTAFMLGLGLGGLAGGWL SKRQGLPLLLLLAAIETLTGAFGLFSLSIFERVGDLVLGAPLPLTALVTLSLVVVPTLLMGATLPLLVGHLVRRSGNVGS AVGQLYYVNTLGAGAACLVCAVLLFPLLGMQSSVLIAVAFNAAVALGAVSAHEVDRRRVRRAVAQPEPSPATLAPRTSLP FGVVLAMAGAGGLVSLSYEIFFFRAMSYASGSSSFAFATTLGAFLIGLASGARLGGEACAGPGGEVLMRRMLRGLLIASL VGFAFLPVLTHLAWLNGGILGVGLLLVYLLARQWGLVLPCLAHLGVAADAQAGMRTGLLYLANILGAASGSVLTGFVLMD HLSLVEVGQLLVVAGLGCALILGLAIPTSRRANLGRAGSIALAGGLAVLTLPWASDKVLEALQWKGGPEAKVAFAQVVEN RSGIVTVDRSGTVYGNGAYDGHFNVDLIRDVNGIVRPYALSLFHAAPREVLMIGLASGSWAQVLANNPEVTLLTIVEINP GYVGLIAGNTSVASVLTHPKVRLVTDDGRRWLRMNAHRRFDAIVINTTFHFRANATNLLSADFHAILKEHLNPRGVVFYN TTNSSRVQRTGCMSFNHGARFTNHLLLSSTPIDWDFIRWRRTLEAYRIDGRPMLDLSRPEHAQGLERLMALEGQTQPDAV HARSVPDAPGDWIEPCAQVLARTAGQTLVTDDNMGTEWRYFWDKQ
Sequences:
>Translated_765_residues MNRPAVALSGDPPHREAAPGQQVRVLCVLFFFSGFPALIYQLVWQRALFRILGVNIESVTIVVTAFMLGLGLGGLAGGWL SKRQGLPLLLLLAAIETLTGAFGLFSLSIFERVGDLVLGAPLPLTALVTLSLVVVPTLLMGATLPLLVGHLVRRSGNVGS AVGQLYYVNTLGAGAACLVCAVLLFPLLGMQSSVLIAVAFNAAVALGAVSAHEVDRRRVRRAVAQPEPSPATLAPRTSLP FGVVLAMAGAGGLVSLSYEIFFFRAMSYASGSSSFAFATTLGAFLIGLASGARLGGEACAGPGGEVLMRRMLRGLLIASL VGFAFLPVLTHLAWLNGGILGVGLLLVYLLARQWGLVLPCLAHLGVAADAQAGMRTGLLYLANILGAASGSVLTGFVLMD HLSLVEVGQLLVVAGLGCALILGLAIPTSRRANLGRAGSIALAGGLAVLTLPWASDKVLEALQWKGGPEAKVAFAQVVEN RSGIVTVDRSGTVYGNGAYDGHFNVDLIRDVNGIVRPYALSLFHAAPREVLMIGLASGSWAQVLANNPEVTLLTIVEINP GYVGLIAGNTSVASVLTHPKVRLVTDDGRRWLRMNAHRRFDAIVINTTFHFRANATNLLSADFHAILKEHLNPRGVVFYN TTNSSRVQRTGCMSFNHGARFTNHLLLSSTPIDWDFIRWRRTLEAYRIDGRPMLDLSRPEHAQGLERLMALEGQTQPDAV HARSVPDAPGDWIEPCAQVLARTAGQTLVTDDNMGTEWRYFWDKQ >Mature_765_residues MNRPAVALSGDPPHREAAPGQQVRVLCVLFFFSGFPALIYQLVWQRALFRILGVNIESVTIVVTAFMLGLGLGGLAGGWL SKRQGLPLLLLLAAIETLTGAFGLFSLSIFERVGDLVLGAPLPLTALVTLSLVVVPTLLMGATLPLLVGHLVRRSGNVGS AVGQLYYVNTLGAGAACLVCAVLLFPLLGMQSSVLIAVAFNAAVALGAVSAHEVDRRRVRRAVAQPEPSPATLAPRTSLP FGVVLAMAGAGGLVSLSYEIFFFRAMSYASGSSSFAFATTLGAFLIGLASGARLGGEACAGPGGEVLMRRMLRGLLIASL VGFAFLPVLTHLAWLNGGILGVGLLLVYLLARQWGLVLPCLAHLGVAADAQAGMRTGLLYLANILGAASGSVLTGFVLMD HLSLVEVGQLLVVAGLGCALILGLAIPTSRRANLGRAGSIALAGGLAVLTLPWASDKVLEALQWKGGPEAKVAFAQVVEN RSGIVTVDRSGTVYGNGAYDGHFNVDLIRDVNGIVRPYALSLFHAAPREVLMIGLASGSWAQVLANNPEVTLLTIVEINP GYVGLIAGNTSVASVLTHPKVRLVTDDGRRWLRMNAHRRFDAIVINTTFHFRANATNLLSADFHAILKEHLNPRGVVFYN TTNSSRVQRTGCMSFNHGARFTNHLLLSSTPIDWDFIRWRRTLEAYRIDGRPMLDLSRPEHAQGLERLMALEGQTQPDAV HARSVPDAPGDWIEPCAQVLARTAGQTLVTDDNMGTEWRYFWDKQ
Specific function: Unknown
COG id: COG0421
COG function: function code E; Spermidine synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81407; Mature: 81407
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRPAVALSGDPPHREAAPGQQVRVLCVLFFFSGFPALIYQLVWQRALFRILGVNIESVT CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHH IVVTAFMLGLGLGGLAGGWLSKRQGLPLLLLLAAIETLTGAFGLFSLSIFERVGDLVLGA HHHHHHHHHHCCCHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLPLTALVTLSLVVVPTLLMGATLPLLVGHLVRRSGNVGSAVGQLYYVNTLGAGAACLVC CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCCHHHHHH AVLLFPLLGMQSSVLIAVAFNAAVALGAVSAHEVDRRRVRRAVAQPEPSPATLAPRTSLP HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FGVVLAMAGAGGLVSLSYEIFFFRAMSYASGSSSFAFATTLGAFLIGLASGARLGGEACA HHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC GPGGEVLMRRMLRGLLIASLVGFAFLPVLTHLAWLNGGILGVGLLLVYLLARQWGLVLPC CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHH LAHLGVAADAQAGMRTGLLYLANILGAASGSVLTGFVLMDHLSLVEVGQLLVVAGLGCAL HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILGLAIPTSRRANLGRAGSIALAGGLAVLTLPWASDKVLEALQWKGGPEAKVAFAQVVEN HHHHCCCCCCCCCCCCCCCEEEECCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHC RSGIVTVDRSGTVYGNGAYDGHFNVDLIRDVNGIVRPYALSLFHAAPREVLMIGLASGSW CCCEEEECCCCEEEECCCCCCCCCEEHHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCH AQVLANNPEVTLLTIVEINPGYVGLIAGNTSVASVLTHPKVRLVTDDGRRWLRMNAHRRF HHHHCCCCCEEEEEEEEECCCEEEEEECCCHHHHHHCCCEEEEEECCCCEEEEECCCCCE DAIVINTTFHFRANATNLLSADFHAILKEHLNPRGVVFYNTTNSSRVQRTGCMSFNHGAR EEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCCCCH FTNHLLLSSTPIDWDFIRWRRTLEAYRIDGRPMLDLSRPEHAQGLERLMALEGQTQPDAV HHHEEEEECCCCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCE HARSVPDAPGDWIEPCAQVLARTAGQTLVTDDNMGTEWRYFWDKQ ECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCC >Mature Secondary Structure MNRPAVALSGDPPHREAAPGQQVRVLCVLFFFSGFPALIYQLVWQRALFRILGVNIESVT CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHH IVVTAFMLGLGLGGLAGGWLSKRQGLPLLLLLAAIETLTGAFGLFSLSIFERVGDLVLGA HHHHHHHHHHCCCHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLPLTALVTLSLVVVPTLLMGATLPLLVGHLVRRSGNVGSAVGQLYYVNTLGAGAACLVC CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCCHHHHHH AVLLFPLLGMQSSVLIAVAFNAAVALGAVSAHEVDRRRVRRAVAQPEPSPATLAPRTSLP HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC FGVVLAMAGAGGLVSLSYEIFFFRAMSYASGSSSFAFATTLGAFLIGLASGARLGGEACA HHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC GPGGEVLMRRMLRGLLIASLVGFAFLPVLTHLAWLNGGILGVGLLLVYLLARQWGLVLPC CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHH LAHLGVAADAQAGMRTGLLYLANILGAASGSVLTGFVLMDHLSLVEVGQLLVVAGLGCAL HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILGLAIPTSRRANLGRAGSIALAGGLAVLTLPWASDKVLEALQWKGGPEAKVAFAQVVEN HHHHCCCCCCCCCCCCCCCEEEECCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHC RSGIVTVDRSGTVYGNGAYDGHFNVDLIRDVNGIVRPYALSLFHAAPREVLMIGLASGSW CCCEEEECCCCEEEECCCCCCCCCEEHHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCH AQVLANNPEVTLLTIVEINPGYVGLIAGNTSVASVLTHPKVRLVTDDGRRWLRMNAHRRF HHHHCCCCCEEEEEEEEECCCEEEEEECCCHHHHHHCCCEEEEEECCCCEEEEECCCCCE DAIVINTTFHFRANATNLLSADFHAILKEHLNPRGVVFYNTTNSSRVQRTGCMSFNHGAR EEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCCCCH FTNHLLLSSTPIDWDFIRWRRTLEAYRIDGRPMLDLSRPEHAQGLERLMALEGQTQPDAV HHHEEEEECCCCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCE HARSVPDAPGDWIEPCAQVLARTAGQTLVTDDNMGTEWRYFWDKQ ECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA