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The map label for this gene is dppB [H]

Identifier: 91788394

GI number: 91788394

Start: 2647021

End: 2647998

Strand: Reverse

Name: dppB [H]

Synonym: Bpro_2531

Alternate gene names: 91788394

Gene position: 2647998-2647021 (Counterclockwise)

Preceding gene: 91788395

Following gene: 91788393

Centisome position: 50.92

GC content: 60.94

Gene sequence:

>978_bases
ATGCTCGTATTCATCATTCGGCGGCTGCTGCAAAGCGTCGTCGTGCTGCTGGTCATGTCGCTGCTGGTGTTTGTCGGCGT
GTATGCGATCGGCAATCCCATCGACATGCTGATCAGTCCCGATGCCGACCAGCTGGACCGGGCCCGCACCATTGCGGCCT
TCGGCCTCGACAAGCCGCTGTGGCAGCAGTATTTTCTGTTCGTGAAGAACGCGCTGGCCGGTGACATGGGGCGCTCATTC
GCCTTCTCTGCGCCGGCGCTGACGCTGATCGTCGAGCGCATGCCGGCGACCATGGAGCTGGCGGTGTTTGCCATCGTGCT
GTCCATCGTTCTCGGTATTCCGCTCGGCCTGTGGGCGGGGCTGCGGCCCAATGGCATCGCCGGCAAGACCATCATGGCTG
TTTCCATTCTGGGCTTTTCGCTGCCGACTTTCTGGGTCGGCCTGATGCTGATCATGGTGTTCGCTGTTCAGCTGGGCTGG
CTGCCGTCCAGCGGACGCGGCCCGACCGAATTGCTGCTGGGTGTGCCCGTCAGCTTTCTGTCGTTCGATGGGCTCAAGCA
CCTGCTGATGCCGGCGTTCAATCTGGCGCTCTTCAATATTGCGCTGGTGATCCGGCTGACGCGCGCCGGCGCCCAGGAGG
CGCTACTGCAGGACTACGTCAAGTTCGCCCGCGCCAAGGGTCTGGGCAATCGCCGCATCATTGGCGTGCATGTGCTGAAA
AACATCCTGATCCCGATCGTGACCGTGATCGCGCTGCAGTTCGGCTCGATCATCGCCTTTGCCATCGTCACGGAGTCGGT
GTTCGCCTGGCCCGGCATGGGCAAGCTGATCATTGACTCGATCCGCTTCCTGGATCGCCCGGTGATCGTGGCTTACCTGA
TGCTCATCGTGGTGATTTTCATTGCCATCAATCTGGTGGTCGACGTGGTCTACTCACTGCTCGATCCGCGTGTACGTTTG
TCCGATAGCAAAGGCTGA

Upstream 100 bases:

>100_bases
GCCTACGGGTTCATCCAGCAATAAACGACTGACCACCATCCGCCCGCAAACACCGGGCGGATTTTTCAGCTTCCCGTAGC
CCAGTTATTCAGGTTATTCG

Downstream 100 bases:

>100_bases
GCATGGAAGACCTACCGCAGCGCGCCGCTGTCGAAACACCATTTGTGGAAACGCCTTTTCGGCGTTTCGCACGCAACTTC
TTCAGCAGCAAAATCGCCAC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLVFIIRRLLQSVVVLLVMSLLVFVGVYAIGNPIDMLISPDADQLDRARTIAAFGLDKPLWQQYFLFVKNALAGDMGRSF
AFSAPALTLIVERMPATMELAVFAIVLSIVLGIPLGLWAGLRPNGIAGKTIMAVSILGFSLPTFWVGLMLIMVFAVQLGW
LPSSGRGPTELLLGVPVSFLSFDGLKHLLMPAFNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLGNRRIIGVHVLK
NILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRFLDRPVIVAYLMLIVVIFIAINLVVDVVYSLLDPRVRL
SDSKG

Sequences:

>Translated_325_residues
MLVFIIRRLLQSVVVLLVMSLLVFVGVYAIGNPIDMLISPDADQLDRARTIAAFGLDKPLWQQYFLFVKNALAGDMGRSF
AFSAPALTLIVERMPATMELAVFAIVLSIVLGIPLGLWAGLRPNGIAGKTIMAVSILGFSLPTFWVGLMLIMVFAVQLGW
LPSSGRGPTELLLGVPVSFLSFDGLKHLLMPAFNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLGNRRIIGVHVLK
NILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRFLDRPVIVAYLMLIVVIFIAINLVVDVVYSLLDPRVRL
SDSKG
>Mature_325_residues
MLVFIIRRLLQSVVVLLVMSLLVFVGVYAIGNPIDMLISPDADQLDRARTIAAFGLDKPLWQQYFLFVKNALAGDMGRSF
AFSAPALTLIVERMPATMELAVFAIVLSIVLGIPLGLWAGLRPNGIAGKTIMAVSILGFSLPTFWVGLMLIMVFAVQLGW
LPSSGRGPTELLLGVPVSFLSFDGLKHLLMPAFNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLGNRRIIGVHVLK
NILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRFLDRPVIVAYLMLIVVIFIAINLVVDVVYSLLDPRVRL
SDSKG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=36.0119047619048, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=35.625, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1789888, Length=328, Percent_Identity=33.2317073170732, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=30.6501547987616, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=33.2116788321168, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787761, Length=322, Percent_Identity=36.0248447204969, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=26.056338028169, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35442; Mature: 35442

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS00732 RIBOSOMAL_S16 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFIIRRLLQSVVVLLVMSLLVFVGVYAIGNPIDMLISPDADQLDRARTIAAFGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCHHHHHHHHHHHHHCCCCHH
WQQYFLFVKNALAGDMGRSFAFSAPALTLIVERMPATMELAVFAIVLSIVLGIPLGLWAG
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
LRPNGIAGKTIMAVSILGFSLPTFWVGLMLIMVFAVQLGWLPSSGRGPTELLLGVPVSFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH
SFDGLKHLLMPAFNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLGNRRIIGVHVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
NILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRFLDRPVIVAYLMLIVVIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
IAINLVVDVVYSLLDPRVRLSDSKG
HHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLVFIIRRLLQSVVVLLVMSLLVFVGVYAIGNPIDMLISPDADQLDRARTIAAFGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCHHHHHHHHHHHHHCCCCHH
WQQYFLFVKNALAGDMGRSFAFSAPALTLIVERMPATMELAVFAIVLSIVLGIPLGLWAG
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
LRPNGIAGKTIMAVSILGFSLPTFWVGLMLIMVFAVQLGWLPSSGRGPTELLLGVPVSFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH
SFDGLKHLLMPAFNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLGNRRIIGVHVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
NILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRFLDRPVIVAYLMLIVVIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
IAINLVVDVVYSLLDPRVRLSDSKG
HHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]