| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yejE [H]
Identifier: 91788287
GI number: 91788287
Start: 2521373
End: 2522515
Strand: Direct
Name: yejE [H]
Synonym: Bpro_2422
Alternate gene names: 91788287
Gene position: 2521373-2522515 (Clockwise)
Preceding gene: 91788286
Following gene: 91788288
Centisome position: 48.49
GC content: 61.5
Gene sequence:
>1143_bases GTGTTAAATTTGACTGACCCCCCCGAAGCGGCCGTTGGCCGCCTCCCCCCCGAGGGGGCGCCGCTGGCGGACGGGCGGAG CCCGATCCGCGGCGGCCTTGGTGAAAACCGTTCTGTGGTCAGTCTTAGTCCGGGTCGGCGGGCGTGGAAGCGTTTTCGCC GCAACAAGCTTGGGTTTTACAGCCTGATCCTGTTTTCGACTCTGGTGGTGCTCAGCCTCTTCGCCGAGGTGCTGTCCAAC GACACGCCGCTGGTGGCCCACTACAAGGGCGAGTATTACTTTCCGCTGCTCAAGGACTATTCGGAAAAGACCTTTGACGG CGACTTTGAAACGCCCACCGACTACCTGGACCCTTTCATCCGCGAGAAGCTGGGGCAGGGGGGCAACTGGGCGCTGTACC CGCCCAACCCTTACGGCCCGCGCACGATCAACTATTTTGCAAAAGAACCCAACCCTTCGGCGCCTTCACGCGACAACCTG CTGGGCACGGACGACCGGGGGCGCGACCTGCTGGCGCAGCTGATCTATGGCTTTCGATTAAGCGTGCTGTTCGGTCTGGC ACTGACAGTGATTGGCGTGGTGATCGGCGTGATCACCGGGGCCGTTCAGGGGTATGCCGGCGGCAAAACAGACCTCGCCT TCCAGCGGTTCATGGAAATCTGGGGCTCCATGCCCGAGCTTTATTTGCTGATCATCTTCAGCGCGGTGTTTGCGCCCAGC GTGGCACTGCTGCTGTTTCTCCTCAGCCTGTTTGGCTGGATGGGATTGTCCGACTATGTGCGCGCCGAGTTTTTGCGCAA CCGCCAGATGGACTATGTGCGCGCAGCCAGGGCCCTGGGCGTGAGCAATCTGCAGATCATGTGGCGGCACATCCTGCCCA ACAGCATGACGCCTGTGGTGACGTTTTTGCCCTTTCGCATGAGCGCGGCGATCTTGGCGCTGACCTCGCTGGATTTCCTG GGCCTGGGCGTGCCCCCGGGTACGCCCTCGTTGGGCGAGTTGCTCAACCAGGGCAAGGCGAACATCGATGCCTGGTGGAT TTCGATGTCGACATTTGCCGTGCTGGTCGTCACGCTGTTGCTGCTGACCTTCATGGGCGACGCCTTGCGCGATGCCCTGG ATCCCCGAAAGGCTGAGCTATGA
Upstream 100 bases:
>100_bases CGGGACTACCCCGTGGTGCTGGGCACGCTCTATCTCTTCACGCTGATCGGCCTGGTGACCAAGCTGGTCAGCGATCTCTG CTATGTCTGGGTAGACCCGC
Downstream 100 bases:
>100_bases CCCCCACGCCTGTCACTGTGCATCCAGCGCTGCCGCCCGATGGGGGCTTCGCGACGGGTGGCGGATCTTCCGCGCCTGCC CATCCGCTGCTGAAAGTCGA
Product: binding-protein-dependent transport systems inner membrane component
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MLNLTDPPEAAVGRLPPEGAPLADGRSPIRGGLGENRSVVSLSPGRRAWKRFRRNKLGFYSLILFSTLVVLSLFAEVLSN DTPLVAHYKGEYYFPLLKDYSEKTFDGDFETPTDYLDPFIREKLGQGGNWALYPPNPYGPRTINYFAKEPNPSAPSRDNL LGTDDRGRDLLAQLIYGFRLSVLFGLALTVIGVVIGVITGAVQGYAGGKTDLAFQRFMEIWGSMPELYLLIIFSAVFAPS VALLLFLLSLFGWMGLSDYVRAEFLRNRQMDYVRAARALGVSNLQIMWRHILPNSMTPVVTFLPFRMSAAILALTSLDFL GLGVPPGTPSLGELLNQGKANIDAWWISMSTFAVLVVTLLLLTFMGDALRDALDPRKAEL
Sequences:
>Translated_380_residues MLNLTDPPEAAVGRLPPEGAPLADGRSPIRGGLGENRSVVSLSPGRRAWKRFRRNKLGFYSLILFSTLVVLSLFAEVLSN DTPLVAHYKGEYYFPLLKDYSEKTFDGDFETPTDYLDPFIREKLGQGGNWALYPPNPYGPRTINYFAKEPNPSAPSRDNL LGTDDRGRDLLAQLIYGFRLSVLFGLALTVIGVVIGVITGAVQGYAGGKTDLAFQRFMEIWGSMPELYLLIIFSAVFAPS VALLLFLLSLFGWMGLSDYVRAEFLRNRQMDYVRAARALGVSNLQIMWRHILPNSMTPVVTFLPFRMSAAILALTSLDFL GLGVPPGTPSLGELLNQGKANIDAWWISMSTFAVLVVTLLLLTFMGDALRDALDPRKAEL >Mature_380_residues MLNLTDPPEAAVGRLPPEGAPLADGRSPIRGGLGENRSVVSLSPGRRAWKRFRRNKLGFYSLILFSTLVVLSLFAEVLSN DTPLVAHYKGEYYFPLLKDYSEKTFDGDFETPTDYLDPFIREKLGQGGNWALYPPNPYGPRTINYFAKEPNPSAPSRDNL LGTDDRGRDLLAQLIYGFRLSVLFGLALTVIGVVIGVITGAVQGYAGGKTDLAFQRFMEIWGSMPELYLLIIFSAVFAPS VALLLFLLSLFGWMGLSDYVRAEFLRNRQMDYVRAARALGVSNLQIMWRHILPNSMTPVVTFLPFRMSAAILALTSLDFL GLGVPPGTPSLGELLNQGKANIDAWWISMSTFAVLVVTLLLLTFMGDALRDALDPRKAEL
Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4239
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788505, Length=338, Percent_Identity=52.0710059171598, Blast_Score=350, Evalue=1e-97, Organism=Escherichia coli, GI1787054, Length=234, Percent_Identity=31.1965811965812, Blast_Score=131, Evalue=6e-32, Organism=Escherichia coli, GI1789964, Length=253, Percent_Identity=36.3636363636364, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1787760, Length=240, Percent_Identity=30.8333333333333, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787498, Length=228, Percent_Identity=35.0877192982456, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787549, Length=216, Percent_Identity=31.4814814814815, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=25.5144032921811, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 42022; Mature: 42022
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLTDPPEAAVGRLPPEGAPLADGRSPIRGGLGENRSVVSLSPGRRAWKRFRRNKLGFY CCCCCCCCHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCEEEECCCHHHHHHHHHCCCHHH SLILFSTLVVLSLFAEVLSNDTPLVAHYKGEYYFPLLKDYSEKTFDGDFETPTDYLDPFI HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECHHHHHHCHHCCCCCCCCCHHHHHHHH REKLGQGGNWALYPPNPYGPRTINYFAKEPNPSAPSRDNLLGTDDRGRDLLAQLIYGFRL HHHCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SVLFGLALTVIGVVIGVITGAVQGYAGGKTDLAFQRFMEIWGSMPELYLLIIFSAVFAPS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VALLLFLLSLFGWMGLSDYVRAEFLRNRQMDYVRAARALGVSNLQIMWRHILPNSMTPVV HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH TFLPFRMSAAILALTSLDFLGLGVPPGTPSLGELLNQGKANIDAWWISMSTFAVLVVTLL HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH LLTFMGDALRDALDPRKAEL HHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure MLNLTDPPEAAVGRLPPEGAPLADGRSPIRGGLGENRSVVSLSPGRRAWKRFRRNKLGFY CCCCCCCCHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCEEEECCCHHHHHHHHHCCCHHH SLILFSTLVVLSLFAEVLSNDTPLVAHYKGEYYFPLLKDYSEKTFDGDFETPTDYLDPFI HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECHHHHHHCHHCCCCCCCCCHHHHHHHH REKLGQGGNWALYPPNPYGPRTINYFAKEPNPSAPSRDNLLGTDDRGRDLLAQLIYGFRL HHHCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SVLFGLALTVIGVVIGVITGAVQGYAGGKTDLAFQRFMEIWGSMPELYLLIIFSAVFAPS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VALLLFLLSLFGWMGLSDYVRAEFLRNRQMDYVRAARALGVSNLQIMWRHILPNSMTPVV HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH TFLPFRMSAAILALTSLDFLGLGVPPGTPSLGELLNQGKANIDAWWISMSTFAVLVVTLL HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH LLTFMGDALRDALDPRKAEL HHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]