Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yejA [C]

Identifier: 91788285

GI number: 91788285

Start: 2518410

End: 2520215

Strand: Direct

Name: yejA [C]

Synonym: Bpro_2420

Alternate gene names: 91788285

Gene position: 2518410-2520215 (Clockwise)

Preceding gene: 91788283

Following gene: 91788286

Centisome position: 48.43

GC content: 61.46

Gene sequence:

>1806_bases
ATGACGACCCTGCTGGTCGGCCTTGCTTTATTCGCGCCGGCTTCCCGGGCTGCATATGCCTACGCCCAGTTTGGCGACAT
TAAATACCCGCCGGGCTTTACCCATTTTGATTATGTGAACCCGGCTGCGCCCAAGGGGGGCGAGATTCGCATGGTGCCGC
CCACCCGGCCCACCAACTTTGACAAGTTCAACCCGTTCACGCTGCGCGGAACTGCCCCCTACGGGCTGGGAATCCTGCTG
ATTGAAAGCCTGCTGACCGGCAACTCCGAAGAGCCCACAACGGCCTACGGATTGCTGGCTGACGACGTGGAGGTGGCGGC
AGACAAATTGTCGGCGACCTTTCGTATCAACAACAAGGCACGTTTTCACGATGGCACGCCCGTGCTGGCGGCTGATGTGC
TGCATTCGTACACCCAGCTCATCAGCAAACTTGCCGCGCCCCAGTACCGCACGATTTACGCTGAAGTCAAGGGGGTGACT
GTGGTCTCGGAGCGCGTCGTGCGCTTTGAGTTCCTGACGCCAAATCCCGAACTGCCGCTGGTCGTCGGCGGAATGCCGGT
GTTCAGCCGGGGCTGGGGCCGGGAGGGAGGCAAGGTCAACGGGGCCAGCAAGCCTTTCGACCAGATCGTTTCGGAAATAC
CCATAGGCTCCGGGCCCTACAAAATCGCCAATCCGGCCATGGGCCGTGACATCACCTATGTGCGGGACCCGGCCTATTGG
GGTGCGGATTTGCCGACACGCAAGGGGCAGTTCAATTTTGACCTCATCAGCTTTAAGATTTACCTGGACGAAACCTCCCG
CTTCGAGGGCCTGAAGGCCGGTGAGTTCGATTTCCTGCGCGAATTCATCTCGCGCAACTGGGCGCGCCAGTACACCGGCA
AGCAGTTCACCTCGGGCGAACTGGTCAAGCGCGCATTTCCAAATCGCAACCCCGGCGACTTCCAGGGTTATGTGTTCAAT
CTGCGCAATCCGAAGTTCCAGGATGTGCGGGTGCGCAAGGCGATCGGCCTGGCGCTGGATTTCGAGTGGATGAACCGGCA
GCTGTTCTATGGCATCTACAAACGCGTGGACGGCTACTTTCCCAACAGCGAGTTTCACGCGGAGGGCCTGCCCAAACCGG
ATGAACTGGCCTTGCTCCAGCCTCTGCGCGCCCAACTCAAACCAGAGGTGTTCGGCGCCGTACCCGTGTCGCCCAGCACC
ACGCCGCCCGGCAGCCTGCGCGAGAACCTGCGCCAGGCCCAGGCGTTGCTGCGCGAGGCCGGCTGGACTTACCGTGACGG
TGCGCTGCGCAATACCAGGGGCGAGGCCTTCACGATGGAGTTCCTGAACGACCAGCCCTCCCTGATACGCATCGTCGGGC
CGTTCCAGAAAGCGCTGGAAAAGCTGGGCATCACCATGACATACCGGGTCGTGGATTTTTCGTTGTCCAAACAGAAGATG
GATGCTTTTGACTTCGAAGTCACCACGTTGCGCCTGCCCGGCAGTACCGCACCGGGCGGCGAGTTGCTGGAGCTGTTTGG
CTCGAAGGCGGCCCAGACACCGGGCTCCTCGAACGTCTGGGGCATTGCCGATCCGGCGGTCGATGCCCTGCTGCAAAAAG
TCGTGACCGCCAAAACCCGGCCTGAACTGGGTGCCGCCATGCGCGCGCTGGACCGCGTGCTGACCCACGGCTACTACTCG
GTGCCGCAGTACTACGGCGATGCGTTCCTGATCGGCTACCGCCCGGGTCGCTTTGTCCTGCCGCAGACGATTCCGCCGTA
TTACCAGGCGGACACCTGGGCCATGAGCACCTGGTGGAGTAAATGA

Upstream 100 bases:

>100_bases
GCTGGCTTACCTGCTGGCCGCCAACCGTTGCCGACGTGAAGTAGTGCAGAATTGTCGCATGCGGGATTTGTCTTTTTTGC
GGGCGCTGGTGATTGCTTTG

Downstream 100 bases:

>100_bases
CCCCCACGCTTGTCACTGCGTGTACTGCGCTGCCCCCCATGGGGGCCGCTGCGCCTGCGGTCTGGCAAAGCCAGCCCCGC
GGCCCCTGCTTGAAGGGATC

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 600

Protein sequence:

>601_residues
MTTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNFDKFNPFTLRGTAPYGLGILL
IESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKARFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVT
VVSERVVRFEFLTPNPELPLVVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW
GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGELVKRAFPNRNPGDFQGYVFN
LRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYFPNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPST
TPPGSLRENLRQAQALLREAGWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM
DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTRPELGAAMRALDRVLTHGYYS
VPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWSK

Sequences:

>Translated_601_residues
MTTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNFDKFNPFTLRGTAPYGLGILL
IESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKARFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVT
VVSERVVRFEFLTPNPELPLVVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW
GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGELVKRAFPNRNPGDFQGYVFN
LRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYFPNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPST
TPPGSLRENLRQAQALLREAGWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM
DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTRPELGAAMRALDRVLTHGYYS
VPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWSK
>Mature_600_residues
TTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNFDKFNPFTLRGTAPYGLGILLI
ESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKARFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVTV
VSERVVRFEFLTPNPELPLVVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYWG
ADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGELVKRAFPNRNPGDFQGYVFNL
RNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYFPNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPSTT
PPGSLRENLRQAQALLREAGWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKMD
AFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTRPELGAAMRALDRVLTHGYYSV
PQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWSK

Specific function: Possible binding-protein with either a transport or enzymatic activity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=605, Percent_Identity=35.702479338843, Blast_Score=352, Evalue=4e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 66956; Mature: 66825

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00210 HEMOCYANIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNF
CHHHHHHHHHHCCCCHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
DKFNPFTLRGTAPYGLGILLIESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKA
CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCEEEEEECCCE
RFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVTVVSERVVRFEFLTPNPELPL
EECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCEEEEECCEEEEEEECCCCCCCE
VVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW
EECCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC
GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGE
CCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
LVKRAFPNRNPGDFQGYVFNLRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYF
HHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCC
PNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPSTTPPGSLRENLRQAQALLREA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
GWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM
CCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECHHHHHHHHHCCEEEEEEEEEECCHHHC
DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTR
CCCCEEEEEEECCCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PELGAAMRALDRVLTHGYYSVPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWS
CHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCCEEECCCCC
K
C
>Mature Secondary Structure 
TTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNF
HHHHHHHHHHCCCCHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
DKFNPFTLRGTAPYGLGILLIESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKA
CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCEEEEEECCCE
RFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVTVVSERVVRFEFLTPNPELPL
EECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCEEEEECCEEEEEEECCCCCCCE
VVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW
EECCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC
GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGE
CCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
LVKRAFPNRNPGDFQGYVFNLRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYF
HHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCC
PNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPSTTPPGSLRENLRQAQALLREA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
GWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM
CCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECHHHHHHHHHCCEEEEEEEEEECCHHHC
DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTR
CCCCEEEEEEECCCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PELGAAMRALDRVLTHGYYSVPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWS
CHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCCEEECCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]