| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yejA [C]
Identifier: 91788285
GI number: 91788285
Start: 2518410
End: 2520215
Strand: Direct
Name: yejA [C]
Synonym: Bpro_2420
Alternate gene names: 91788285
Gene position: 2518410-2520215 (Clockwise)
Preceding gene: 91788283
Following gene: 91788286
Centisome position: 48.43
GC content: 61.46
Gene sequence:
>1806_bases ATGACGACCCTGCTGGTCGGCCTTGCTTTATTCGCGCCGGCTTCCCGGGCTGCATATGCCTACGCCCAGTTTGGCGACAT TAAATACCCGCCGGGCTTTACCCATTTTGATTATGTGAACCCGGCTGCGCCCAAGGGGGGCGAGATTCGCATGGTGCCGC CCACCCGGCCCACCAACTTTGACAAGTTCAACCCGTTCACGCTGCGCGGAACTGCCCCCTACGGGCTGGGAATCCTGCTG ATTGAAAGCCTGCTGACCGGCAACTCCGAAGAGCCCACAACGGCCTACGGATTGCTGGCTGACGACGTGGAGGTGGCGGC AGACAAATTGTCGGCGACCTTTCGTATCAACAACAAGGCACGTTTTCACGATGGCACGCCCGTGCTGGCGGCTGATGTGC TGCATTCGTACACCCAGCTCATCAGCAAACTTGCCGCGCCCCAGTACCGCACGATTTACGCTGAAGTCAAGGGGGTGACT GTGGTCTCGGAGCGCGTCGTGCGCTTTGAGTTCCTGACGCCAAATCCCGAACTGCCGCTGGTCGTCGGCGGAATGCCGGT GTTCAGCCGGGGCTGGGGCCGGGAGGGAGGCAAGGTCAACGGGGCCAGCAAGCCTTTCGACCAGATCGTTTCGGAAATAC CCATAGGCTCCGGGCCCTACAAAATCGCCAATCCGGCCATGGGCCGTGACATCACCTATGTGCGGGACCCGGCCTATTGG GGTGCGGATTTGCCGACACGCAAGGGGCAGTTCAATTTTGACCTCATCAGCTTTAAGATTTACCTGGACGAAACCTCCCG CTTCGAGGGCCTGAAGGCCGGTGAGTTCGATTTCCTGCGCGAATTCATCTCGCGCAACTGGGCGCGCCAGTACACCGGCA AGCAGTTCACCTCGGGCGAACTGGTCAAGCGCGCATTTCCAAATCGCAACCCCGGCGACTTCCAGGGTTATGTGTTCAAT CTGCGCAATCCGAAGTTCCAGGATGTGCGGGTGCGCAAGGCGATCGGCCTGGCGCTGGATTTCGAGTGGATGAACCGGCA GCTGTTCTATGGCATCTACAAACGCGTGGACGGCTACTTTCCCAACAGCGAGTTTCACGCGGAGGGCCTGCCCAAACCGG ATGAACTGGCCTTGCTCCAGCCTCTGCGCGCCCAACTCAAACCAGAGGTGTTCGGCGCCGTACCCGTGTCGCCCAGCACC ACGCCGCCCGGCAGCCTGCGCGAGAACCTGCGCCAGGCCCAGGCGTTGCTGCGCGAGGCCGGCTGGACTTACCGTGACGG TGCGCTGCGCAATACCAGGGGCGAGGCCTTCACGATGGAGTTCCTGAACGACCAGCCCTCCCTGATACGCATCGTCGGGC CGTTCCAGAAAGCGCTGGAAAAGCTGGGCATCACCATGACATACCGGGTCGTGGATTTTTCGTTGTCCAAACAGAAGATG GATGCTTTTGACTTCGAAGTCACCACGTTGCGCCTGCCCGGCAGTACCGCACCGGGCGGCGAGTTGCTGGAGCTGTTTGG CTCGAAGGCGGCCCAGACACCGGGCTCCTCGAACGTCTGGGGCATTGCCGATCCGGCGGTCGATGCCCTGCTGCAAAAAG TCGTGACCGCCAAAACCCGGCCTGAACTGGGTGCCGCCATGCGCGCGCTGGACCGCGTGCTGACCCACGGCTACTACTCG GTGCCGCAGTACTACGGCGATGCGTTCCTGATCGGCTACCGCCCGGGTCGCTTTGTCCTGCCGCAGACGATTCCGCCGTA TTACCAGGCGGACACCTGGGCCATGAGCACCTGGTGGAGTAAATGA
Upstream 100 bases:
>100_bases GCTGGCTTACCTGCTGGCCGCCAACCGTTGCCGACGTGAAGTAGTGCAGAATTGTCGCATGCGGGATTTGTCTTTTTTGC GGGCGCTGGTGATTGCTTTG
Downstream 100 bases:
>100_bases CCCCCACGCTTGTCACTGCGTGTACTGCGCTGCCCCCCATGGGGGCCGCTGCGCCTGCGGTCTGGCAAAGCCAGCCCCGC GGCCCCTGCTTGAAGGGATC
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 601; Mature: 600
Protein sequence:
>601_residues MTTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNFDKFNPFTLRGTAPYGLGILL IESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKARFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVT VVSERVVRFEFLTPNPELPLVVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGELVKRAFPNRNPGDFQGYVFN LRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYFPNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPST TPPGSLRENLRQAQALLREAGWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTRPELGAAMRALDRVLTHGYYS VPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWSK
Sequences:
>Translated_601_residues MTTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNFDKFNPFTLRGTAPYGLGILL IESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKARFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVT VVSERVVRFEFLTPNPELPLVVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGELVKRAFPNRNPGDFQGYVFN LRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYFPNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPST TPPGSLRENLRQAQALLREAGWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTRPELGAAMRALDRVLTHGYYS VPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWSK >Mature_600_residues TTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNFDKFNPFTLRGTAPYGLGILLI ESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKARFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVTV VSERVVRFEFLTPNPELPLVVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYWG ADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGELVKRAFPNRNPGDFQGYVFNL RNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYFPNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPSTT PPGSLRENLRQAQALLREAGWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKMD AFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTRPELGAAMRALDRVLTHGYYSV PQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWSK
Specific function: Possible binding-protein with either a transport or enzymatic activity [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=605, Percent_Identity=35.702479338843, Blast_Score=352, Evalue=4e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 66956; Mature: 66825
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: PS00210 HEMOCYANIN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNF CHHHHHHHHHHCCCCHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC DKFNPFTLRGTAPYGLGILLIESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKA CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCEEEEEECCCE RFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVTVVSERVVRFEFLTPNPELPL EECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCEEEEECCEEEEEEECCCCCCCE VVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW EECCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGE CCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH LVKRAFPNRNPGDFQGYVFNLRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYF HHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCC PNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPSTTPPGSLRENLRQAQALLREA CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHC GWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM CCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECHHHHHHHHHCCEEEEEEEEEECCHHHC DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTR CCCCEEEEEEECCCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC PELGAAMRALDRVLTHGYYSVPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWS CHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCCEEECCCCC K C >Mature Secondary Structure TTLLVGLALFAPASRAAYAYAQFGDIKYPPGFTHFDYVNPAAPKGGEIRMVPPTRPTNF HHHHHHHHHHCCCCHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC DKFNPFTLRGTAPYGLGILLIESLLTGNSEEPTTAYGLLADDVEVAADKLSATFRINNKA CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCEEEEEECCCE RFHDGTPVLAADVLHSYTQLISKLAAPQYRTIYAEVKGVTVVSERVVRFEFLTPNPELPL EECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCEEEEECCEEEEEEECCCCCCCE VVGGMPVFSRGWGREGGKVNGASKPFDQIVSEIPIGSGPYKIANPAMGRDITYVRDPAYW EECCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC GADLPTRKGQFNFDLISFKIYLDETSRFEGLKAGEFDFLREFISRNWARQYTGKQFTSGE CCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH LVKRAFPNRNPGDFQGYVFNLRNPKFQDVRVRKAIGLALDFEWMNRQLFYGIYKRVDGYF HHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCC PNSEFHAEGLPKPDELALLQPLRAQLKPEVFGAVPVSPSTTPPGSLRENLRQAQALLREA CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHC GWTYRDGALRNTRGEAFTMEFLNDQPSLIRIVGPFQKALEKLGITMTYRVVDFSLSKQKM CCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECHHHHHHHHHCCEEEEEEEEEECCHHHC DAFDFEVTTLRLPGSTAPGGELLELFGSKAAQTPGSSNVWGIADPAVDALLQKVVTAKTR CCCCEEEEEEECCCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC PELGAAMRALDRVLTHGYYSVPQYYGDAFLIGYRPGRFVLPQTIPPYYQADTWAMSTWWS CHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCCEEECCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]