| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yjnA [H]
Identifier: 91788209
GI number: 91788209
Start: 2438049
End: 2438840
Strand: Reverse
Name: yjnA [H]
Synonym: Bpro_2340
Alternate gene names: 91788209
Gene position: 2438840-2438049 (Counterclockwise)
Preceding gene: 91788212
Following gene: 91788208
Centisome position: 46.9
GC content: 62.75
Gene sequence:
>792_bases ATGCATGAATTTGCCTTTGTCTTTGCAGGATTTGCCGTGGGCCTGGTTGTCGGCCTGACGGGTGTGGGCGGCGGATCGCT GATGACGCCGTTGCTGATCTTCTTTTTCGGCATCAAGCCCCATCTGGCCATCGGAACAGACCTGCTGTTCGCAGCCTTCA CCAAAATGGGCGGCACCGTCAGCCTGGCGCGCGCCCGGGTCGTGGACTGGCGCATTGTCGGCCAGGTTGCTGCCGGCAGC CTGCCCGCGTCGCTGCTCACCCTGTATGTGCTGCAGCGGATGGGGCCGGCCAACCCGACGACCCAGACCATCATGACGAC AACGCTGGGCCTGGCGTTGCTGCTGACGGCCATTGCGACCTTCTATAAAGTGCTTCGCGGCAAAGCCGTTCCCAAAAGGA TCGCGGCCGAACTGCTGGGCGAGGCTACGCGCGCTCATCACTGGGCATTGCCCGTGCTGTTTGGCGCCGTCATCGGCACC CTTGTCACGATGACTTCTGTGGGCGCGGGCGCCATTGGCGTGATTGTGCTGATGCTGCTGTACCCCACCCTGCCCCTGTC GCGCATTGTGGCGGCCGATATTGCCCATGCGGTACCACTCACGCTGGTGGCGGGCCTGGGACACGCTTCCATCGGCTCGG TAGACTGGTCTTTGCTGATCAAGCTGCTGGCCGGCTCTCTGCCCGGCATCTGGCTGGGTTCGCACCTGATGCATAAAACG CCTGACCGCGTGATCCGCTCCTTGCTGTCCGTCCTGCTGGCCTATGCCGGCGTGAAGCTCATTTCGATATAG
Upstream 100 bases:
>100_bases GCCAAACCCTTATGAAGACTCGCAAATAAGCTTATTCGCATAAAGGTAGAACAAATGTGTAGTTTGTTTTTATAAGCCGC ACACTTACATTTTCCGGCTT
Downstream 100 bases:
>100_bases TCGGCTACTGTTTTTCCTTCCGTAGCTCACGCTGCTCCCCTGAACCGTTTCATCCTGAACCGTTTGATACCCCGACAGCC ATGTACCAATACACAGAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MHEFAFVFAGFAVGLVVGLTGVGGGSLMTPLLIFFFGIKPHLAIGTDLLFAAFTKMGGTVSLARARVVDWRIVGQVAAGS LPASLLTLYVLQRMGPANPTTQTIMTTTLGLALLLTAIATFYKVLRGKAVPKRIAAELLGEATRAHHWALPVLFGAVIGT LVTMTSVGAGAIGVIVLMLLYPTLPLSRIVAADIAHAVPLTLVAGLGHASIGSVDWSLLIKLLAGSLPGIWLGSHLMHKT PDRVIRSLLSVLLAYAGVKLISI
Sequences:
>Translated_263_residues MHEFAFVFAGFAVGLVVGLTGVGGGSLMTPLLIFFFGIKPHLAIGTDLLFAAFTKMGGTVSLARARVVDWRIVGQVAAGS LPASLLTLYVLQRMGPANPTTQTIMTTTLGLALLLTAIATFYKVLRGKAVPKRIAAELLGEATRAHHWALPVLFGAVIGT LVTMTSVGAGAIGVIVLMLLYPTLPLSRIVAADIAHAVPLTLVAGLGHASIGSVDWSLLIKLLAGSLPGIWLGSHLMHKT PDRVIRSLLSVLLAYAGVKLISI >Mature_263_residues MHEFAFVFAGFAVGLVVGLTGVGGGSLMTPLLIFFFGIKPHLAIGTDLLFAAFTKMGGTVSLARARVVDWRIVGQVAAGS LPASLLTLYVLQRMGPANPTTQTIMTTTLGLALLLTAIATFYKVLRGKAVPKRIAAELLGEATRAHHWALPVLFGAVIGT LVTMTSVGAGAIGVIVLMLLYPTLPLSRIVAADIAHAVPLTLVAGLGHASIGSVDWSLLIKLLAGSLPGIWLGSHLMHKT PDRVIRSLLSVLLAYAGVKLISI
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 27445; Mature: 27445
Theoretical pI: Translated: 11.04; Mature: 11.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHEFAFVFAGFAVGLVVGLTGVGGGSLMTPLLIFFFGIKPHLAIGTDLLFAAFTKMGGTV CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH SLARARVVDWRIVGQVAAGSLPASLLTLYVLQRMGPANPTTQTIMTTTLGLALLLTAIAT HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH FYKVLRGKAVPKRIAAELLGEATRAHHWALPVLFGAVIGTLVTMTSVGAGAIGVIVLMLL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH YPTLPLSRIVAADIAHAVPLTLVAGLGHASIGSVDWSLLIKLLAGSLPGIWLGSHLMHKT HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCC PDRVIRSLLSVLLAYAGVKLISI HHHHHHHHHHHHHHHCCHHHHCC >Mature Secondary Structure MHEFAFVFAGFAVGLVVGLTGVGGGSLMTPLLIFFFGIKPHLAIGTDLLFAAFTKMGGTV CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH SLARARVVDWRIVGQVAAGSLPASLLTLYVLQRMGPANPTTQTIMTTTLGLALLLTAIAT HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH FYKVLRGKAVPKRIAAELLGEATRAHHWALPVLFGAVIGTLVTMTSVGAGAIGVIVLMLL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH YPTLPLSRIVAADIAHAVPLTLVAGLGHASIGSVDWSLLIKLLAGSLPGIWLGSHLMHKT HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCC PDRVIRSLLSVLLAYAGVKLISI HHHHHHHHHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9579062; 9384377 [H]