BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is phnC

Identifier: 91788109

GI number: 91788109

Start: 2325016

End: 2325849

Strand: Direct

Name: phnC

Synonym: Bpro_2237

Alternate gene names: 91788109

Gene position: 2325016-2325849 (Clockwise)

Preceding gene: 91788108

Following gene: 91788110

Centisome position: 44.71

GC content: 67.99

Gene sequence:

>834_bases
ATGAATATCAAGCTAGACAAGGTATCGGCGCGGCATCCTGCGGCAAAACGCGATGCCGCGGCGGCGCTGCGCGGTGTGTC
GCTGGAGGTGTCTGCTGGCGAACAGATCGCCGTGATCGGGCCTTCCGGCGCTGGCAAGACCACGCTGCTGCACGTACTGG
GCTGTGCCCTGCCGCCGTCGTCCGGCAGCCTGCAGCTCAACGCGCGCGATCCCTGGCGGCTGCCCCGCAGCAAGCTGCAG
CTTTTGCGCGGCGAGCTGTTTCTGGCACCGCAGGTGCCGCCCCTGCCGCCGCGTCAGCGCGTCGTCACCTCGGTGCTGGC
CGGTCGCCTGCCGCATATCGGCCTGTGGCAGAGCTTGCGCAGCCTGTTTTACCCGACGGCGATTGCCCAGGCCGACGCCG
CGCTGGCCCGGTTTGACTTGAGCGACAAGTTGTTTGCCCGGGTGGACCGGCTGTCGGGCGGTGAGCGTCAGCGCGTGGGC
CTGGCCCGCGCGCTGGTCACCGAGGCCAGCTTGCTGCTGGTCGACGAGCCACTCTCTGCGCTGGACCCGACGCGCGGGCA
GCAGGCCATTGCTTCTTTGACGCAAGCGGCACGCGAGCGTGGCGCCACGCTGGTCAGCACCCTGCACCATGTCGAGATGG
CGCTGCAGAATTTTCCGCGCATCATCGGTCTGCGAGACGGAGAGCTGGCCTTCGATCTGCCGGCAGCCCAGGTGACGCCC
GAGCGCCTGCAGGCGCTGTATGCGCAGCATTTGCATGAGCTCACTGGGCCAGCGCATGAGGCGTTCGATCTGCCTGCGGC
AGCAACGCCTCCTGCGGTCATGCATTGCCGCTGA

Upstream 100 bases:

>100_bases
TGAGGCAGCCGCCCGCAGTGCCGGTTTGCTCAAGTAAAAATGCTATCAAATAAGTAGCCTCTCGCGCCCATCAATAAAGG
GCTAGAGGTCGTTTTTGTAT

Downstream 100 bases:

>100_bases
CCGGCCCGACACTCCCATGACCAGTGCGACCGCCCGCCTGCCCATGCGCCCCGAGCTGCGCGACCCGGCCTGGCGCGGCC
GCATTTTCTGGGCACTGGCT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNIKLDKVSARHPAAKRDAAAALRGVSLEVSAGEQIAVIGPSGAGKTTLLHVLGCALPPSSGSLQLNARDPWRLPRSKLQ
LLRGELFLAPQVPPLPPRQRVVTSVLAGRLPHIGLWQSLRSLFYPTAIAQADAALARFDLSDKLFARVDRLSGGERQRVG
LARALVTEASLLLVDEPLSALDPTRGQQAIASLTQAARERGATLVSTLHHVEMALQNFPRIIGLRDGELAFDLPAAQVTP
ERLQALYAQHLHELTGPAHEAFDLPAAATPPAVMHCR

Sequences:

>Translated_277_residues
MNIKLDKVSARHPAAKRDAAAALRGVSLEVSAGEQIAVIGPSGAGKTTLLHVLGCALPPSSGSLQLNARDPWRLPRSKLQ
LLRGELFLAPQVPPLPPRQRVVTSVLAGRLPHIGLWQSLRSLFYPTAIAQADAALARFDLSDKLFARVDRLSGGERQRVG
LARALVTEASLLLVDEPLSALDPTRGQQAIASLTQAARERGATLVSTLHHVEMALQNFPRIIGLRDGELAFDLPAAQVTP
ERLQALYAQHLHELTGPAHEAFDLPAAATPPAVMHCR
>Mature_277_residues
MNIKLDKVSARHPAAKRDAAAALRGVSLEVSAGEQIAVIGPSGAGKTTLLHVLGCALPPSSGSLQLNARDPWRLPRSKLQ
LLRGELFLAPQVPPLPPRQRVVTSVLAGRLPHIGLWQSLRSLFYPTAIAQADAALARFDLSDKLFARVDRLSGGERQRVG
LARALVTEASLLLVDEPLSALDPTRGQQAIASLTQAARERGATLVSTLHHVEMALQNFPRIIGLRDGELAFDLPAAQVTP
ERLQALYAQHLHELTGPAHEAFDLPAAATPPAVMHCR

Specific function: Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system

COG id: COG3638

COG function: function code P; ABC-type phosphate/phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain

Homologues:

Organism=Homo sapiens, GI45446740, Length=230, Percent_Identity=27.3913043478261, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI47078218, Length=230, Percent_Identity=27.3913043478261, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI9961250, Length=230, Percent_Identity=27.3913043478261, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI4505771, Length=230, Percent_Identity=27.3913043478261, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI9961252, Length=230, Percent_Identity=27.3913043478261, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI150417984, Length=193, Percent_Identity=31.0880829015544, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI21536378, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI42741659, Length=234, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI21536376, Length=209, Percent_Identity=27.7511961722488, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI116734710, Length=227, Percent_Identity=28.6343612334802, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI31657092, Length=211, Percent_Identity=27.0142180094787, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI27436953, Length=222, Percent_Identity=27.4774774774775, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI105990541, Length=193, Percent_Identity=27.979274611399, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1790544, Length=231, Percent_Identity=35.9307359307359, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=33.6099585062241, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1786253, Length=207, Percent_Identity=37.1980676328502, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=32.7433628318584, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787089, Length=255, Percent_Identity=31.3725490196078, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786803, Length=250, Percent_Identity=30.8, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=30.3030303030303, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=30.8755760368664, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=31.7972350230415, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790739, Length=249, Percent_Identity=29.718875502008, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=30.0448430493274, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786319, Length=229, Percent_Identity=27.9475982532751, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786563, Length=205, Percent_Identity=33.6585365853659, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789873, Length=227, Percent_Identity=29.5154185022026, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789032, Length=212, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=28.5106382978723, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789891, Length=232, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787112, Length=229, Percent_Identity=30.5676855895196, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786398, Length=227, Percent_Identity=29.0748898678414, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790534, Length=196, Percent_Identity=30.1020408163265, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081709, Length=183, Percent_Identity=30.6010928961749, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787500, Length=201, Percent_Identity=30.3482587064677, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787758, Length=299, Percent_Identity=28.4280936454849, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081791, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788450, Length=227, Percent_Identity=29.9559471365639, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789962, Length=195, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790190, Length=249, Percent_Identity=26.1044176706827, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787792, Length=242, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082268, Length=247, Percent_Identity=29.1497975708502, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788644, Length=222, Percent_Identity=31.981981981982, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786703, Length=208, Percent_Identity=32.6923076923077, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788472, Length=244, Percent_Identity=24.5901639344262, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788506, Length=240, Percent_Identity=30.4166666666667, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=26.8518518518519, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787164, Length=225, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081782, Length=260, Percent_Identity=29.6153846153846, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790162, Length=261, Percent_Identity=26.8199233716475, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994883, Length=218, Percent_Identity=26.605504587156, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789864, Length=232, Percent_Identity=25.4310344827586, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786872, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082267, Length=210, Percent_Identity=28.0952380952381, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787143, Length=235, Percent_Identity=26.3829787234043, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48995001, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788210, Length=242, Percent_Identity=24.7933884297521, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786654, Length=212, Percent_Identity=28.7735849056604, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=211, Percent_Identity=31.2796208530806, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193209708, Length=224, Percent_Identity=29.4642857142857, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=280, Percent_Identity=28.2142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=280, Percent_Identity=28.2142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=280, Percent_Identity=28.2142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115535101, Length=233, Percent_Identity=28.3261802575107, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115533592, Length=218, Percent_Identity=27.9816513761468, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=230, Percent_Identity=29.1304347826087, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=232, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=221, Percent_Identity=29.8642533936652, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=233, Percent_Identity=28.755364806867, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=208, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=197, Percent_Identity=27.9187817258883, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=227, Percent_Identity=29.9559471365639, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=232, Percent_Identity=26.7241379310345, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=226, Percent_Identity=29.646017699115, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6319856, Length=243, Percent_Identity=27.5720164609054, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=28.5024154589372, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24643674, Length=219, Percent_Identity=27.8538812785388, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17136662, Length=234, Percent_Identity=29.0598290598291, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI85726357, Length=215, Percent_Identity=27.4418604651163, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920532, Length=233, Percent_Identity=28.3261802575107, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24580930, Length=233, Percent_Identity=28.3261802575107, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI17136592, Length=240, Percent_Identity=29.5833333333333, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281363262, Length=181, Percent_Identity=29.8342541436464, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24653245, Length=181, Percent_Identity=29.8342541436464, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920928, Length=219, Percent_Identity=29.2237442922374, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724858, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85724856, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580547, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580551, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580549, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580545, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHNC_POLSJ (Q12BC9)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_549061.1
- ProteinModelPortal:   Q12BC9
- SMR:   Q12BC9
- STRING:   Q12BC9
- GeneID:   4015118
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_2237
- NMPDR:   fig|296591.1.peg.3841
- eggNOG:   COG3638
- HOGENOM:   HBG758042
- OMA:   SLRSLFY
- ProtClustDB:   CLSK721802
- BioCyc:   PSP296591:BPRO_2237-MONOMER
- HAMAP:   MF_01713
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR012693
- InterPro:   IPR003593
- SMART:   SM00382

Pfam domain/function: PF00005 ABC_tran

EC number: =3.6.3.28

Molecular weight: Translated: 29706; Mature: 29706

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2; PS51249 PHNC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKLDKVSARHPAAKRDAAAALRGVSLEVSAGEQIAVIGPSGAGKTTLLHVLGCALPPS
CCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC
SGSLQLNARDPWRLPRSKLQLLRGELFLAPQVPPLPPRQRVVTSVLAGRLPHIGLWQSLR
CCCEEECCCCCCCCCHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
SLFYPTAIAQADAALARFDLSDKLFARVDRLSGGERQRVGLARALVTEASLLLVDEPLSA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCHHH
LDPTRGQQAIASLTQAARERGATLVSTLHHVEMALQNFPRIIGLRDGELAFDLPAAQVTP
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCCH
ERLQALYAQHLHELTGPAHEAFDLPAAATPPAVMHCR
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEECCC
>Mature Secondary Structure
MNIKLDKVSARHPAAKRDAAAALRGVSLEVSAGEQIAVIGPSGAGKTTLLHVLGCALPPS
CCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC
SGSLQLNARDPWRLPRSKLQLLRGELFLAPQVPPLPPRQRVVTSVLAGRLPHIGLWQSLR
CCCEEECCCCCCCCCHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
SLFYPTAIAQADAALARFDLSDKLFARVDRLSGGERQRVGLARALVTEASLLLVDEPLSA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCHHH
LDPTRGQQAIASLTQAARERGATLVSTLHHVEMALQNFPRIIGLRDGELAFDLPAAQVTP
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCCH
ERLQALYAQHLHELTGPAHEAFDLPAAATPPAVMHCR
HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA