| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rng [H]
Identifier: 91787851
GI number: 91787851
Start: 2041286
End: 2042791
Strand: Direct
Name: rng [H]
Synonym: Bpro_1975
Alternate gene names: 91787851
Gene position: 2041286-2042791 (Clockwise)
Preceding gene: 91787850
Following gene: 91787852
Centisome position: 39.25
GC content: 60.82
Gene sequence:
>1506_bases ATGCAACAAGACATACTGATCAACTGGTCGCCCCAGGAAACCCGTGTGGCCGTGGTGGAGCTCGGTGCGGTGCAGGAGTT GCAGGTCGAACGCACGCTGGAGCGCGGCCTGGTTGGCAATGTTTACCTGGGCAAGGTTGCACGCGTGTTGCCGGGCATGC AGTCGGCCTTTATCGACATTGGCCTGGACCGGGCGGCATTTCTGCATGTTGCCGATCTGATGAGCAGCATCAACAGCCGT CATGCAGAGACAGAACTCCAGGCTGCCGGCACGTCGACCTCGGCGTCGCCGGCAACGGTAGCCCTGCAGCCCATTGAAAA ACAGCTGTTCGAGGGGCAGGCCGTGATGGTCCAGGTTCTCAAGGATCCGATTGGCACCAAGGGCGCACGGCTGACGGCGC AAATCAGCATCGCCGGCCGCTTGCTGGTTTTTCTGCCGCAGGACAATCACATTGGCGTGTCGCAAAAAATACCCCCGCGC CAGCGCGAGGACCTGCGCCAGCGTGTCCAGGCCCTGACCGAGGACATGGGCGGCGGCTTTATCCTCCGGACCAATGGCGA GGATGCCACCGATGCCGAACTGGGAGAGGACATTGCCTACCTGCGCAAAACCTGGTCGCGCATCAAGGAGGCCTCGCTGC GCCTGCCGCCTGCGTCTGTCCTGCACCAGGACCTCAACCTGCTGCAGCGCGTGTTGCGTGACGTGGTGGTGGAGGGCACG CAAACCATACGCATCGATTCCCGCGAGCAGTTTGACAACCTGAAGGCCTTCGCGGTGGAGTTCATGCCGGCAACCGTGCA AAAGCTTCAGCTTTATAGCGGTGAACGCCCGATCTTTGACCTTTACAACATTGACGAAGACATTGCCAGGGCGCTGGGCC GGCGTGTTGACCTCAAGTCAGGCGGCTACCTGATCATTGACCAGACCGAAGCCCTGACGACCATTGACGTCAATACGGGC GGATTTGTCGGTGCCCGGAATTTTGACGACACCATTTTCAAGACCAACCTGGAAGCCTCGCAGGCGATTGCCCGGCAGCT TCGCCTGCGCAACCTCGGCGGCATTGTGATTGTCGATTTCATTGACATGATCAAGGAAAACCACCGCGATGCGGTGCTGG CCGAGTTCCAGAAGCAGCTGGCGCGGGACCGCATCAAGACCGCAGTCAACGGCTTTTCGGCGCTGGGACTGCTGGAAATG ACCCGCAAGCGAACACGCGAGTCTCTGGCCCACCAGTTGTGCGAGCCCTGCAGCGCCTGCATGGGAAAAGGGGTGGTCAA GACGGCGCGCAGTGTGGGTTACGACATCCTGCGCGAGATCCTGCGCGAAGCGCGCCAGTTCAACCCGCGGGAGTTCAGGG TGGTGGCTTCGCCCAAGGTGATCGAGCTTTTCCTTGACGAGGAAAGCCAGCACCTGGCCGGCCTGAGCGACTTCATCGGC AAGCCCATTTCGCTGCAGGCGGAAGCGGCCATGGCGCAGGAACAGTACGACATCGTTCTGCTATGA
Upstream 100 bases:
>100_bases ATTGCCCCTGCATGAGACTGCATGGCTCCTGCGCGCCGCCGGCCTCAAAATCTAGCAGTGGCCAGCCAGCAGCGAAGCCA CTAGCGGCTACGATAGAGCC
Downstream 100 bases:
>100_bases GCGCAAGCTTTCCGGCCATCCTGGCAACAGCTTGCACCGCCAACCGCAGGCCCATTCCCATTCTGGTCTATCACCAGATT GCCGAGGCGCCGCCCAAGGG
Product: ribonuclease G
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MQQDILINWSPQETRVAVVELGAVQELQVERTLERGLVGNVYLGKVARVLPGMQSAFIDIGLDRAAFLHVADLMSSINSR HAETELQAAGTSTSASPATVALQPIEKQLFEGQAVMVQVLKDPIGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPR QREDLRQRVQALTEDMGGGFILRTNGEDATDAELGEDIAYLRKTWSRIKEASLRLPPASVLHQDLNLLQRVLRDVVVEGT QTIRIDSREQFDNLKAFAVEFMPATVQKLQLYSGERPIFDLYNIDEDIARALGRRVDLKSGGYLIIDQTEALTTIDVNTG GFVGARNFDDTIFKTNLEASQAIARQLRLRNLGGIVIVDFIDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEM TRKRTRESLAHQLCEPCSACMGKGVVKTARSVGYDILREILREARQFNPREFRVVASPKVIELFLDEESQHLAGLSDFIG KPISLQAEAAMAQEQYDIVLL
Sequences:
>Translated_501_residues MQQDILINWSPQETRVAVVELGAVQELQVERTLERGLVGNVYLGKVARVLPGMQSAFIDIGLDRAAFLHVADLMSSINSR HAETELQAAGTSTSASPATVALQPIEKQLFEGQAVMVQVLKDPIGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPR QREDLRQRVQALTEDMGGGFILRTNGEDATDAELGEDIAYLRKTWSRIKEASLRLPPASVLHQDLNLLQRVLRDVVVEGT QTIRIDSREQFDNLKAFAVEFMPATVQKLQLYSGERPIFDLYNIDEDIARALGRRVDLKSGGYLIIDQTEALTTIDVNTG GFVGARNFDDTIFKTNLEASQAIARQLRLRNLGGIVIVDFIDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEM TRKRTRESLAHQLCEPCSACMGKGVVKTARSVGYDILREILREARQFNPREFRVVASPKVIELFLDEESQHLAGLSDFIG KPISLQAEAAMAQEQYDIVLL >Mature_501_residues MQQDILINWSPQETRVAVVELGAVQELQVERTLERGLVGNVYLGKVARVLPGMQSAFIDIGLDRAAFLHVADLMSSINSR HAETELQAAGTSTSASPATVALQPIEKQLFEGQAVMVQVLKDPIGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPR QREDLRQRVQALTEDMGGGFILRTNGEDATDAELGEDIAYLRKTWSRIKEASLRLPPASVLHQDLNLLQRVLRDVVVEGT QTIRIDSREQFDNLKAFAVEFMPATVQKLQLYSGERPIFDLYNIDEDIARALGRRVDLKSGGYLIIDQTEALTTIDVNTG GFVGARNFDDTIFKTNLEASQAIARQLRLRNLGGIVIVDFIDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEM TRKRTRESLAHQLCEPCSACMGKGVVKTARSVGYDILREILREARQFNPREFRVVASPKVIELFLDEESQHLAGLSDFIG KPISLQAEAAMAQEQYDIVLL
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=501, Percent_Identity=50.0998003992016, Blast_Score=489, Evalue=1e-139, Organism=Escherichia coli, GI1787325, Length=467, Percent_Identity=34.6895074946467, Blast_Score=255, Evalue=5e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 55650; Mature: 55650
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQDILINWSPQETRVAVVELGAVQELQVERTLERGLVGNVYLGKVARVLPGMQSAFIDI CCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHC GLDRAAFLHVADLMSSINSRHAETELQAAGTSTSASPATVALQPIEKQLFEGQAVMVQVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHH KDPIGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPRQREDLRQRVQALTEDMGGGF HCCCCCCCCEEEEEEEEECEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE ILRTNGEDATDAELGEDIAYLRKTWSRIKEASLRLPPASVLHQDLNLLQRVLRDVVVEGT EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC QTIRIDSREQFDNLKAFAVEFMPATVQKLQLYSGERPIFDLYNIDEDIARALGRRVDLKS CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCEEEECC GGYLIIDQTEALTTIDVNTGGFVGARNFDDTIFKTNLEASQAIARQLRLRNLGGIVIVDF CCEEEEECCCCEEEEECCCCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH IDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEMTRKRTRESLAHQLCEPCSAC HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MGKGVVKTARSVGYDILREILREARQFNPREFRVVASPKVIELFLDEESQHLAGLSDFIG HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCHHHHCCHHHHHC KPISLQAEAAMAQEQYDIVLL CCCCCHHHHHHHHHCCCEEEC >Mature Secondary Structure MQQDILINWSPQETRVAVVELGAVQELQVERTLERGLVGNVYLGKVARVLPGMQSAFIDI CCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHC GLDRAAFLHVADLMSSINSRHAETELQAAGTSTSASPATVALQPIEKQLFEGQAVMVQVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHH KDPIGTKGARLTAQISIAGRLLVFLPQDNHIGVSQKIPPRQREDLRQRVQALTEDMGGGF HCCCCCCCCEEEEEEEEECEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE ILRTNGEDATDAELGEDIAYLRKTWSRIKEASLRLPPASVLHQDLNLLQRVLRDVVVEGT EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC QTIRIDSREQFDNLKAFAVEFMPATVQKLQLYSGERPIFDLYNIDEDIARALGRRVDLKS CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCEEEECC GGYLIIDQTEALTTIDVNTGGFVGARNFDDTIFKTNLEASQAIARQLRLRNLGGIVIVDF CCEEEEECCCCEEEEECCCCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHH IDMIKENHRDAVLAEFQKQLARDRIKTAVNGFSALGLLEMTRKRTRESLAHQLCEPCSAC HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MGKGVVKTARSVGYDILREILREARQFNPREFRVVASPKVIELFLDEESQHLAGLSDFIG HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCHHHHCCHHHHHC KPISLQAEAAMAQEQYDIVLL CCCCCHHHHHHHHHCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]