| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787800
Identifier: 91787800
GI number: 91787800
Start: 1982517
End: 1984190
Strand: Reverse
Name: 91787800
Synonym: Bpro_1923
Alternate gene names: NA
Gene position: 1984190-1982517 (Counterclockwise)
Preceding gene: 91787802
Following gene: 91787798
Centisome position: 38.16
GC content: 52.75
Gene sequence:
>1674_bases ATGCCCAAGCGAAAAACAGCCGAATCAGTGCTCTCCGCATTTAGAAATGTGCATGGCCAGCGCTACGGCTATGAACTGGT GAGTTATGCGGGCATGTGGAGCAAAGTCAAGGTTGTCTGCTCCCGCCATGGCGTTTTTGAGGTCACCCCCGAGCACCACT TCAGGGGAGTCGGATGCAGCAAATGCTACTTCGATAGGCAAAAACTCACTAAAGCAGATTTCATCGCGCGTGCTGAAGTC CATTTTGGAAATCGCTTTGGCTATGGAAGCATTGACGAGTTGCCTGCTGCTGGCGAGAAGGTTCGCATCAAATGCAAGGT ACATGACCTGTATTTTCTACAAGAGCCTCGCAATCACAGTCGTGGTCATGTCGGTTGCCCCAAGTGCAAGTCACTAAAGC TGTCGGGTAGCCGGAGAAGCCATGGGCAGCTCACGTCAGAGAAGGACTTGACGAACCAATTCATCCTGGATGCACAACAG GTTCACGGCAATGCCTATGACTATAGCGAGTTCAAATATCTGACAGCGCGCACGAAAGGAAAAATCCTCTGTCCTGTTCA TGGAGAATTTTTTCAAGCGCCAAGTAATCATCTTCGGGGAACCAAATGTCCGGCATGTGCGAAGAAGACGAAGGCCAGCG GTAGTTTCAAACAGCGTTGCAGAGAACTAGGCATTGACTACTGGCGTGCGCTAAAAAGACGTGAAGCAGGGATGAGCGAT GAAAAGATCTTTGCGGAAGGCTACGTGCGCGGAGACCGAGAAACCCCCACAGCGCTGACAGTGTACGGAGTAAGTTACCC GAACATTGAGTTGGCTTGCAGGGTGCTGCTGCCGACTGCAAATCCAACGACGATCGGCCGCTGGATTCGCAGTGGTATGG CGCCAGAAGAGGCGTTTGAACGGATACCAAATCCGGGCTACGCAGCTGGCTTGATTTATCTAGTGACGCATGTTGCAAGC GGCAAGCGGTATGTGGGTCTAACAATACAGACGCTGGAGCGCCGATGGACTTATCACCTACAGCAAGCACGAGCTGGCCA CGTCAGGGGTGCTGACTCCCTTCACGCTGCGATTCGTGAGCACGGATCGAACGCATTCACCATGGTTCAGATTGACAGCG GCACGACAAAGGTGGATCTTGAACAGAAGGAGCGCCACTGGATCAACGCTTACGGCACCCTCGTCCCAGCCGGGTACAAC ATTTCAGCCGGCGGTGTGAGTGGCGGGTCTAACCGTAAGCCTGTGACGATCGATGGACAACAGTTCCCCAGCGTTGAGGC AGCTGTCATACAGATCTCTAAGAGCCGCGGCATCAGTCTTCACGCAGCAAAAGCTAGACTCCGGTTCGGCCGCATCGACG TGAAGACTCCGGCAAAAAAAGGGGAAAGCCTGGTCAAGACCCCTGCGTACAAAGCCTGGAGCCGTATCGTTCATGGAGTG CTGAATCAAAAAGCAAAGGATTACATCCCTGGCGTGGGTCTTTTCGAGCCTTGGCGAGACTTTCAAACATTCTTTAAAGA TGTCGGTCAGCCCCCCGAGCCAGGCATGGCTTTCACCAGACTTGATAAGTCCAAGGGCTTCTTCCCAGAGAATTGCGTGT GGCTGACCAAAAGCGAATCAAGCAGACTTAATGCAGTATTGGCTGGAGGCACTGTCAAAAAGGAAATAGGGTGA
Upstream 100 bases:
>100_bases TGCGCTGATTCAATAAGTGGTAATTCAGTAGTGACTGACCTGGAGTTGATCTGCGGCAACGCATCTTGCATCTTCCAGAA CTGCGGCACAAAATTCACCC
Downstream 100 bases:
>100_bases ACGTGTTTCTGGCGCCTTGCGCTGCGAATGCACTGGTAACGATGACTCCACCGCTTGCTGAATAGATCGACATTTTCCGC GGTGCTCATTCAGGCTCAGC
Product: excinuclease ABC subunit C
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MPKRKTAESVLSAFRNVHGQRYGYELVSYAGMWSKVKVVCSRHGVFEVTPEHHFRGVGCSKCYFDRQKLTKADFIARAEV HFGNRFGYGSIDELPAAGEKVRIKCKVHDLYFLQEPRNHSRGHVGCPKCKSLKLSGSRRSHGQLTSEKDLTNQFILDAQQ VHGNAYDYSEFKYLTARTKGKILCPVHGEFFQAPSNHLRGTKCPACAKKTKASGSFKQRCRELGIDYWRALKRREAGMSD EKIFAEGYVRGDRETPTALTVYGVSYPNIELACRVLLPTANPTTIGRWIRSGMAPEEAFERIPNPGYAAGLIYLVTHVAS GKRYVGLTIQTLERRWTYHLQQARAGHVRGADSLHAAIREHGSNAFTMVQIDSGTTKVDLEQKERHWINAYGTLVPAGYN ISAGGVSGGSNRKPVTIDGQQFPSVEAAVIQISKSRGISLHAAKARLRFGRIDVKTPAKKGESLVKTPAYKAWSRIVHGV LNQKAKDYIPGVGLFEPWRDFQTFFKDVGQPPEPGMAFTRLDKSKGFFPENCVWLTKSESSRLNAVLAGGTVKKEIG
Sequences:
>Translated_557_residues MPKRKTAESVLSAFRNVHGQRYGYELVSYAGMWSKVKVVCSRHGVFEVTPEHHFRGVGCSKCYFDRQKLTKADFIARAEV HFGNRFGYGSIDELPAAGEKVRIKCKVHDLYFLQEPRNHSRGHVGCPKCKSLKLSGSRRSHGQLTSEKDLTNQFILDAQQ VHGNAYDYSEFKYLTARTKGKILCPVHGEFFQAPSNHLRGTKCPACAKKTKASGSFKQRCRELGIDYWRALKRREAGMSD EKIFAEGYVRGDRETPTALTVYGVSYPNIELACRVLLPTANPTTIGRWIRSGMAPEEAFERIPNPGYAAGLIYLVTHVAS GKRYVGLTIQTLERRWTYHLQQARAGHVRGADSLHAAIREHGSNAFTMVQIDSGTTKVDLEQKERHWINAYGTLVPAGYN ISAGGVSGGSNRKPVTIDGQQFPSVEAAVIQISKSRGISLHAAKARLRFGRIDVKTPAKKGESLVKTPAYKAWSRIVHGV LNQKAKDYIPGVGLFEPWRDFQTFFKDVGQPPEPGMAFTRLDKSKGFFPENCVWLTKSESSRLNAVLAGGTVKKEIG >Mature_556_residues PKRKTAESVLSAFRNVHGQRYGYELVSYAGMWSKVKVVCSRHGVFEVTPEHHFRGVGCSKCYFDRQKLTKADFIARAEVH FGNRFGYGSIDELPAAGEKVRIKCKVHDLYFLQEPRNHSRGHVGCPKCKSLKLSGSRRSHGQLTSEKDLTNQFILDAQQV HGNAYDYSEFKYLTARTKGKILCPVHGEFFQAPSNHLRGTKCPACAKKTKASGSFKQRCRELGIDYWRALKRREAGMSDE KIFAEGYVRGDRETPTALTVYGVSYPNIELACRVLLPTANPTTIGRWIRSGMAPEEAFERIPNPGYAAGLIYLVTHVASG KRYVGLTIQTLERRWTYHLQQARAGHVRGADSLHAAIREHGSNAFTMVQIDSGTTKVDLEQKERHWINAYGTLVPAGYNI SAGGVSGGSNRKPVTIDGQQFPSVEAAVIQISKSRGISLHAAKARLRFGRIDVKTPAKKGESLVKTPAYKAWSRIVHGVL NQKAKDYIPGVGLFEPWRDFQTFFKDVGQPPEPGMAFTRLDKSKGFFPENCVWLTKSESSRLNAVLAGGTVKKEIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62058; Mature: 61926
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKRKTAESVLSAFRNVHGQRYGYELVSYAGMWSKVKVVCSRHGVFEVTPEHHFRGVGCS CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEECCCHHCCCCCCH KCYFDRQKLTKADFIARAEVHFGNRFGYGSIDELPAAGEKVRIKCKVHDLYFLQEPRNHS HHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHCCCCCCEEEEEEEEEEEEEEECCCCCC RGHVGCPKCKSLKLSGSRRSHGQLTSEKDLTNQFILDAQQVHGNAYDYSEFKYLTARTKG CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC KILCPVHGEFFQAPSNHLRGTKCPACAKKTKASGSFKQRCRELGIDYWRALKRREAGMSD CEEECCCCHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCC EKIFAEGYVRGDRETPTALTVYGVSYPNIELACRVLLPTANPTTIGRWIRSGMAPEEAFE CCEEECCEEECCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHH RIPNPGYAAGLIYLVTHVASGKRYVGLTIQTLERRWTYHLQQARAGHVRGADSLHAAIRE HCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH HGSNAFTMVQIDSGTTKVDLEQKERHWINAYGTLVPAGYNISAGGVSGGSNRKPVTIDGQ CCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCEEECCCEEECCCCCCCCCCCCEEECCC QFPSVEAAVIQISKSRGISLHAAKARLRFGRIDVKTPAKKGESLVKTPAYKAWSRIVHGV CCCCCEEEEEEEECCCCCEEEEHHHHHEECEEEECCCHHCCCHHHCCCHHHHHHHHHHHH LNQKAKDYIPGVGLFEPWRDFQTFFKDVGQPPEPGMAFTRLDKSKGFFPENCVWLTKSES HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCC SRLNAVLAGGTVKKEIG CCCEEEEECCCCHHCCC >Mature Secondary Structure PKRKTAESVLSAFRNVHGQRYGYELVSYAGMWSKVKVVCSRHGVFEVTPEHHFRGVGCS CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEECCCHHCCCCCCH KCYFDRQKLTKADFIARAEVHFGNRFGYGSIDELPAAGEKVRIKCKVHDLYFLQEPRNHS HHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHCCCCCCEEEEEEEEEEEEEEECCCCCC RGHVGCPKCKSLKLSGSRRSHGQLTSEKDLTNQFILDAQQVHGNAYDYSEFKYLTARTKG CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC KILCPVHGEFFQAPSNHLRGTKCPACAKKTKASGSFKQRCRELGIDYWRALKRREAGMSD CEEECCCCHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCC EKIFAEGYVRGDRETPTALTVYGVSYPNIELACRVLLPTANPTTIGRWIRSGMAPEEAFE CCEEECCEEECCCCCCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHH RIPNPGYAAGLIYLVTHVASGKRYVGLTIQTLERRWTYHLQQARAGHVRGADSLHAAIRE HCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH HGSNAFTMVQIDSGTTKVDLEQKERHWINAYGTLVPAGYNISAGGVSGGSNRKPVTIDGQ CCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCEEECCCEEECCCCCCCCCCCCEEECCC QFPSVEAAVIQISKSRGISLHAAKARLRFGRIDVKTPAKKGESLVKTPAYKAWSRIVHGV CCCCCEEEEEEEECCCCCEEEEHHHHHEECEEEECCCHHCCCHHHCCCHHHHHHHHHHHH LNQKAKDYIPGVGLFEPWRDFQTFFKDVGQPPEPGMAFTRLDKSKGFFPENCVWLTKSES HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCC SRLNAVLAGGTVKKEIG CCCEEEEECCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA