Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is ycdQ [C]

Identifier: 91787766

GI number: 91787766

Start: 1950227

End: 1951309

Strand: Reverse

Name: ycdQ [C]

Synonym: Bpro_1887

Alternate gene names: 91787766

Gene position: 1951309-1950227 (Counterclockwise)

Preceding gene: 91787767

Following gene: 91787765

Centisome position: 37.52

GC content: 64.54

Gene sequence:

>1083_bases
ATGAAAGCAGAAACTTCCTGGCAAACACTTCACGCAGGTGCGCCGGCATGCCGCGTATCCGTCATCATCAAGGCGCTGAA
TGAAGAAAAGCACATCGTGGCGACCGTGAAAAGCGCCCTGCACGCGGTGGCCGCCATCGGTGGCGAGGTGGTGCTCGCAG
ACTCGTGCTCCACGGACCGCACGGTGGAACGGGCGCGGCCTTATCCGATCCGCATCGTGCAGTTTGCCCATGCCAGTGAA
CGTTGCTGCGGTGCCGGCCCACAACTGGGTTACCAGCACTCGCACGGCGAGTTTGTCTATATCCTTGACGGCGACATGCA
GATGCTCGAAGGTTTTCTGGAACGGGCGCTCGACTTCCTTCTGGAACACCCCCATATTGCCGGTGTCGGTGGCCGCCTCG
TCGAACAAAACAACCACAGCCTGGAATACCTGTCGCGCGGGGAGCGTAAGTCCGCTCACCTGTCGCCGGGCAGGGTCGAC
CGGCTCGACGGCGGTGGCCTGTACCGGCGCAGTGCGATCGAGGCCGCAGGGTACTTCTCGGACCGCAACCTGCACAGCTA
TGAAGAATTTGACCTGGCCGTGCGCCTGCGTGCCCTGGGCTGGCAGCTCTGGCGCCTGCCGGTGGATGCGGCCTATCACT
TTGGGCATGATGCGCCGCCCTACGACCTGCTGATGCGGCGCTGGCGCAGCCGTTATGTCTGCGGCCTGGGCGAACTGGTC
CGCGCCGCGGCCGGCCAGCCGCGCCTGCCATTGGTGGTGAAGGGCCTGCGCGAGTTGCGGCTTTACCTGGCCGTTCTGGC
CTGGTGGGCCGTGTTGCTCAGCGTGCCCTTCTGGCCCGTGTCCGGGGCTGCCAGTCTGGGATTGTTTTGCGCACTGGCCG
CAGCGCCTTTCCTGTTGATGGCCTGGCGCAAGCGCTCGGTAACCAAAGCGGTTTATTCCGTGGTCTCCTGGTGCTTCAAC
GCCGCCGGCCTGGTACGTGGCTTGCTCCGCGCACGCCGGCCCGCGCATGAACCCATTTCCAGCCGCATCGTGAAGGAACC
CACAGGCCTGCCTTCGCAACCGGCGCAAGGCGTTTCCCCATGA

Upstream 100 bases:

>100_bases
GGCCTGTTTTTTCCCGGGACTGCTGGTCAGGAACTGGCAACTCTGGCGCATACGCCGTGCTGCCCGGGCGGTCGATGTCG
CCGATGGAGGATAAGAAAAA

Downstream 100 bases:

>100_bases
GAAACGAAACTGTCCCCAGCATGGATCGGCCCGGCAGAGATCGCGTATGACCCAGCAGTTCACCGGCGTTCAAATCCTGC
GGTTCATCGCGGCCATGCTG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Glycosyltransferase Protein; Capsular Polysaccharide Bisynthesis Glycosyl Transferase; Glycosyltransferase Family 2 Domain Protein; Glycosyl Transferase; Glycosyl Transferase Group 2 Family Protein

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDRTVERARPYPIRIVQFAHASE
RCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFLLEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVD
RLDGGGLYRRSAIEAAGYFSDRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV
RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLMAWRKRSVTKAVYSVVSWCFN
AAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP

Sequences:

>Translated_360_residues
MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDRTVERARPYPIRIVQFAHASE
RCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFLLEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVD
RLDGGGLYRRSAIEAAGYFSDRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV
RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLMAWRKRSVTKAVYSVVSWCFN
AAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP
>Mature_360_residues
MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDRTVERARPYPIRIVQFAHASE
RCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFLLEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVD
RLDGGGLYRRSAIEAAGYFSDRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV
RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLMAWRKRSVTKAVYSVVSWCFN
AAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39740; Mature: 39740

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDR
CCCCCCHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
TVERARPYPIRIVQFAHASERCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFL
HHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
LEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVDRLDGGGLYRRSAIEAAGYFS
HCCCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
DRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLM
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AWRKRSVTKAVYSVVSWCFNAAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDR
CCCCCCHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH
TVERARPYPIRIVQFAHASERCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFL
HHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
LEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVDRLDGGGLYRRSAIEAAGYFS
HCCCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
DRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLM
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AWRKRSVTKAVYSVVSWCFNAAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA