| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is ycdQ [C]
Identifier: 91787766
GI number: 91787766
Start: 1950227
End: 1951309
Strand: Reverse
Name: ycdQ [C]
Synonym: Bpro_1887
Alternate gene names: 91787766
Gene position: 1951309-1950227 (Counterclockwise)
Preceding gene: 91787767
Following gene: 91787765
Centisome position: 37.52
GC content: 64.54
Gene sequence:
>1083_bases ATGAAAGCAGAAACTTCCTGGCAAACACTTCACGCAGGTGCGCCGGCATGCCGCGTATCCGTCATCATCAAGGCGCTGAA TGAAGAAAAGCACATCGTGGCGACCGTGAAAAGCGCCCTGCACGCGGTGGCCGCCATCGGTGGCGAGGTGGTGCTCGCAG ACTCGTGCTCCACGGACCGCACGGTGGAACGGGCGCGGCCTTATCCGATCCGCATCGTGCAGTTTGCCCATGCCAGTGAA CGTTGCTGCGGTGCCGGCCCACAACTGGGTTACCAGCACTCGCACGGCGAGTTTGTCTATATCCTTGACGGCGACATGCA GATGCTCGAAGGTTTTCTGGAACGGGCGCTCGACTTCCTTCTGGAACACCCCCATATTGCCGGTGTCGGTGGCCGCCTCG TCGAACAAAACAACCACAGCCTGGAATACCTGTCGCGCGGGGAGCGTAAGTCCGCTCACCTGTCGCCGGGCAGGGTCGAC CGGCTCGACGGCGGTGGCCTGTACCGGCGCAGTGCGATCGAGGCCGCAGGGTACTTCTCGGACCGCAACCTGCACAGCTA TGAAGAATTTGACCTGGCCGTGCGCCTGCGTGCCCTGGGCTGGCAGCTCTGGCGCCTGCCGGTGGATGCGGCCTATCACT TTGGGCATGATGCGCCGCCCTACGACCTGCTGATGCGGCGCTGGCGCAGCCGTTATGTCTGCGGCCTGGGCGAACTGGTC CGCGCCGCGGCCGGCCAGCCGCGCCTGCCATTGGTGGTGAAGGGCCTGCGCGAGTTGCGGCTTTACCTGGCCGTTCTGGC CTGGTGGGCCGTGTTGCTCAGCGTGCCCTTCTGGCCCGTGTCCGGGGCTGCCAGTCTGGGATTGTTTTGCGCACTGGCCG CAGCGCCTTTCCTGTTGATGGCCTGGCGCAAGCGCTCGGTAACCAAAGCGGTTTATTCCGTGGTCTCCTGGTGCTTCAAC GCCGCCGGCCTGGTACGTGGCTTGCTCCGCGCACGCCGGCCCGCGCATGAACCCATTTCCAGCCGCATCGTGAAGGAACC CACAGGCCTGCCTTCGCAACCGGCGCAAGGCGTTTCCCCATGA
Upstream 100 bases:
>100_bases GGCCTGTTTTTTCCCGGGACTGCTGGTCAGGAACTGGCAACTCTGGCGCATACGCCGTGCTGCCCGGGCGGTCGATGTCG CCGATGGAGGATAAGAAAAA
Downstream 100 bases:
>100_bases GAAACGAAACTGTCCCCAGCATGGATCGGCCCGGCAGAGATCGCGTATGACCCAGCAGTTCACCGGCGTTCAAATCCTGC GGTTCATCGCGGCCATGCTG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: Glycosyltransferase Protein; Capsular Polysaccharide Bisynthesis Glycosyl Transferase; Glycosyltransferase Family 2 Domain Protein; Glycosyl Transferase; Glycosyl Transferase Group 2 Family Protein
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDRTVERARPYPIRIVQFAHASE RCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFLLEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVD RLDGGGLYRRSAIEAAGYFSDRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLMAWRKRSVTKAVYSVVSWCFN AAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP
Sequences:
>Translated_360_residues MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDRTVERARPYPIRIVQFAHASE RCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFLLEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVD RLDGGGLYRRSAIEAAGYFSDRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLMAWRKRSVTKAVYSVVSWCFN AAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP >Mature_360_residues MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDRTVERARPYPIRIVQFAHASE RCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFLLEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVD RLDGGGLYRRSAIEAAGYFSDRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLMAWRKRSVTKAVYSVVSWCFN AAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39740; Mature: 39740
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDR CCCCCCHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH TVERARPYPIRIVQFAHASERCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFL HHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH LEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVDRLDGGGLYRRSAIEAAGYFS HCCCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC DRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLM HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH AWRKRSVTKAVYSVVSWCFNAAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MKAETSWQTLHAGAPACRVSVIIKALNEEKHIVATVKSALHAVAAIGGEVVLADSCSTDR CCCCCCHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCH TVERARPYPIRIVQFAHASERCCGAGPQLGYQHSHGEFVYILDGDMQMLEGFLERALDFL HHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH LEHPHIAGVGGRLVEQNNHSLEYLSRGERKSAHLSPGRVDRLDGGGLYRRSAIEAAGYFS HCCCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC DRNLHSYEEFDLAVRLRALGWQLWRLPVDAAYHFGHDAPPYDLLMRRWRSRYVCGLGELV CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH RAAAGQPRLPLVVKGLRELRLYLAVLAWWAVLLSVPFWPVSGAASLGLFCALAAAPFLLM HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH AWRKRSVTKAVYSVVSWCFNAAGLVRGLLRARRPAHEPISSRIVKEPTGLPSQPAQGVSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA