| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pstS1 [H]
Identifier: 91787529
GI number: 91787529
Start: 1700661
End: 1701491
Strand: Direct
Name: pstS1 [H]
Synonym: Bpro_1647
Alternate gene names: 91787529
Gene position: 1700661-1701491 (Clockwise)
Preceding gene: 91787528
Following gene: 91787530
Centisome position: 32.7
GC content: 58.0
Gene sequence:
>831_bases ATGTCGCTGCATTTACCTTTGAAGCTTTCGCGGTTCACGATCGCACTGTTGTGGGCGCTGGTGAGTTCGTTGGCATGGGG AGCGGAACAGATCGTCCTCGACGGTTCAAGTGGAATGCTCCCACTCGCGAAGGCTCTTGCTTCGGCCTATCAACAGCGAT CTTCCGATCCTCAGGTGGAGATCGGAAAGGGCCTTGGAGCGGGGGCAAGACTCCGAGCCCTGGCCGAGGGCAAGATTCAG ATCGCGCTGGCCAGCCATGGCATCACACCTGAGGATGTGCAGAAGGGAAACCTGAAAATCATCGAGGTGGCGAAGGGGGC AATTGTGTTCGCGGTCAACGCCAGCGTTCCCATCACCAACTTTACCGAGTCGCAGGTATGTGATGCTTACAGCGGAAAGA TTCGAAGCTGGCAACCCTTGGGCGGCTCCGATAATTCCGTGGCCGTGCTCACCCGGCCGCCTACGGAAGTGGACCCCGAG GTCATTCGGGCCAAAGTTGGCTGCTTCAAGGAACTAAAAGAGATCGAGACGGCAAAGGTGATGGCTCGCGGTGGCGACAT GGCCAAAGCGCTTGCGGAGACGCCGTACGCACTCGGGATGACGAGCATGACCGTAGTGGAACAGAGTGCAGGAAAAGTGA GGGCGTTGACCCTGAACGGTATTGCTCCCACAGCGGAGAATGTGAAGAGCGGCCGCTACTTTCTGACGCGTGACTTTCTA TTCGTTATCAAAGGGGAGCCAACAGGCCCGGTGAAGCGATTTCTCGATTTCGTCTTGAGTCCGGAGGGGGACCGCGCCAT CCAAGCAAACGGCGCGGTGCCGCTACGATAG
Upstream 100 bases:
>100_bases CCCTTCGTATATGGACACCCCCACAAGTTCAGGAGGCGGCTTCGCCGCGAACGGTGGTGGTCCGGTCATTTTTACGTTAG GCCCCAATAGGAGATCATCC
Downstream 100 bases:
>100_bases CTCTAGTTGACTTAGTCCGGTTGTTGATACACGGCGCTCATTTCAGCTCTGTCCTCGTACTAGCATCGGGGCCTAACCGC GCAATCGACAGCGACACTTG
Product: phosphate transport system substrate-binding protein
Products: NA
Alternate protein names: PBP 1 [H]
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MSLHLPLKLSRFTIALLWALVSSLAWGAEQIVLDGSSGMLPLAKALASAYQQRSSDPQVEIGKGLGAGARLRALAEGKIQ IALASHGITPEDVQKGNLKIIEVAKGAIVFAVNASVPITNFTESQVCDAYSGKIRSWQPLGGSDNSVAVLTRPPTEVDPE VIRAKVGCFKELKEIETAKVMARGGDMAKALAETPYALGMTSMTVVEQSAGKVRALTLNGIAPTAENVKSGRYFLTRDFL FVIKGEPTGPVKRFLDFVLSPEGDRAIQANGAVPLR
Sequences:
>Translated_276_residues MSLHLPLKLSRFTIALLWALVSSLAWGAEQIVLDGSSGMLPLAKALASAYQQRSSDPQVEIGKGLGAGARLRALAEGKIQ IALASHGITPEDVQKGNLKIIEVAKGAIVFAVNASVPITNFTESQVCDAYSGKIRSWQPLGGSDNSVAVLTRPPTEVDPE VIRAKVGCFKELKEIETAKVMARGGDMAKALAETPYALGMTSMTVVEQSAGKVRALTLNGIAPTAENVKSGRYFLTRDFL FVIKGEPTGPVKRFLDFVLSPEGDRAIQANGAVPLR >Mature_275_residues SLHLPLKLSRFTIALLWALVSSLAWGAEQIVLDGSSGMLPLAKALASAYQQRSSDPQVEIGKGLGAGARLRALAEGKIQI ALASHGITPEDVQKGNLKIIEVAKGAIVFAVNASVPITNFTESQVCDAYSGKIRSWQPLGGSDNSVAVLTRPPTEVDPEV IRAKVGCFKELKEIETAKVMARGGDMAKALAETPYALGMTSMTVVEQSAGKVRALTLNGIAPTAENVKSGRYFLTRDFLF VIKGEPTGPVKRFLDFVLSPEGDRAIQANGAVPLR
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 29313; Mature: 29182
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLHLPLKLSRFTIALLWALVSSLAWGAEQIVLDGSSGMLPLAKALASAYQQRSSDPQVE CCEECCEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEE IGKGLGAGARLRALAEGKIQIALASHGITPEDVQKGNLKIIEVAKGAIVFAVNASVPITN ECCCCCCCHHEEEEECCEEEEEEECCCCCHHHHCCCCEEEEEEECCEEEEEEECCCCCCC FTESQVCDAYSGKIRSWQPLGGSDNSVAVLTRPPTEVDPEVIRAKVGCFKELKEIETAKV CCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH MARGGDMAKALAETPYALGMTSMTVVEQSAGKVRALTLNGIAPTAENVKSGRYFLTRDFL HHCCCHHHHHHHCCCHHHCCHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCEEEEEEEE FVIKGEPTGPVKRFLDFVLSPEGDRAIQANGAVPLR EEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCCCC >Mature Secondary Structure SLHLPLKLSRFTIALLWALVSSLAWGAEQIVLDGSSGMLPLAKALASAYQQRSSDPQVE CEECCEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEE IGKGLGAGARLRALAEGKIQIALASHGITPEDVQKGNLKIIEVAKGAIVFAVNASVPITN ECCCCCCCHHEEEEECCEEEEEEECCCCCHHHHCCCCEEEEEEECCEEEEEEECCCCCCC FTESQVCDAYSGKIRSWQPLGGSDNSVAVLTRPPTEVDPEVIRAKVGCFKELKEIETAKV CCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH MARGGDMAKALAETPYALGMTSMTVVEQSAGKVRALTLNGIAPTAENVKSGRYFLTRDFL HHCCCHHHHHHHCCCHHHCCHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCEEEEEEEE FVIKGEPTGPVKRFLDFVLSPEGDRAIQANGAVPLR EEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12354221 [H]