| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is boxC [H]
Identifier: 91787510
GI number: 91787510
Start: 1680821
End: 1682479
Strand: Direct
Name: boxC [H]
Synonym: Bpro_1628
Alternate gene names: 91787510
Gene position: 1680821-1682479 (Clockwise)
Preceding gene: 91787509
Following gene: 91787511
Centisome position: 32.32
GC content: 63.11
Gene sequence:
>1659_bases GTGAACATTGACACTCGCGTTGACTATCAAACCAACCCCGGTCGCTATAAACACTGGGCACTGAAGTTTGAAGGGCCCGT CGCCACGCTGACGGCTGACTTTGACGAAAACGCAGGCCTGCGACCTGGCTACAAGCTCAAGCTCAACAGCTACGACCTTG GCGTTGATATTGAGCTCAATGATGCGATCAACCGCATTCGCTTCGAGCATCCGGAAGTCCGCACGGTGGTGGTGACCAGT GCCAAGGAGAAGGTCTTCTGCTCTGGCGCCAACATTTTCATGCTGGGTGTCAGCAGCCACTCCTGGAAGGTGAACTTCTG CAAATTCACCAACGAAACCCGCAACGGCCTGGAAGACTCCTCCAAATACAGCGGCCTGAAGTTCCTGGCCGCCGTCAATG GCGCATGTGCCGGTGGTGGCTATGAACTGGCGCTGGCCTGCGACGAAATCATCTTGGTGGATGACCGCTCCAGCGCGGTG AGCCTGCCCGAGGTGCCGCTGCTGGGCGTGCTGCCCGGCACCGGCGGCCTGACACGCGTCACCGACAAGAAGCATGTGCG CCACGACCTGGCCGATCTGTTCTGTACCAGCGTCGAAGGCGTGCGCGGCCAGAAGGCCAAGGACTGGCGCCTGGTGGACG ACATCGCCAAGCCGCAGGTCTTTGCCCAGAAGGTGCGCGAGCGGGCGCTTGAATTGGCCGCCACCAGCGACCGGCCGGCC GATGGCAAAGGTGTCATGCTGTCACCGGTGGCGTGCGTGCTCGAGGCAGATGCACTGCGCTACCCGAATGTGACGGTCGA AATTGACCGCGCCAAGCGTACCGCCACCTGGACCGTCAAGGGCCCCACGGGTGCCCAGCCCACCGACGTGGCCGGCATCG AGGCCGCGGGCGCAGCCTGGTACCCGTTGCAGATGGCGCGCGAACTGGAAGATGCCATCCTGCAAATGCGCACCAACGAG CTGGACATTGGCACCTGGTTGATCGAGACCCAGGGCGATCCGGCTGCGGTGCTGGCAATGGACGCCACCTTGCTGGCCCA TCAGAACCACTGGCTGGTGCGTGAAACGATTGGTTTGCTGCGCCGCACGTTCAGCCGTCTGGATGTGTCGTCGCGCAGCC TGTTTGCGCTGATCGAGCCAGGTTCCTGCTTTGCCGGTACCTTCCTGGAGCTGGCCCTGGCCTGCGACCGCAGCTACCAC CTGGCGCTGCCCGACGACGAGTCTGGTGCGCCGAAGATCACCGTGGGCGAGGTCAACTTCAGCCTGTACCCGATGGTGAC GGAACAGAGCCGCCTGGGCCGCCGTTTCTACAACGAGCAACCCGCGCTGGACGCTGTGCGCGCCAGCATGGGCCAGCCAC TCGATGCCGACGCCGCGTTCGCCCTCGGCCTGGTCACGTCCAACCCGGACGACATCGACTGGACCGACGAAGTACGTATT GCCGTCGAAGAGCGCGTGTCGATGTCGCCCGATGCCCTCACCGGCATGGAGGCCAACCTGCGCTTCAACGGCCCTGAAAA CATGTTCACCCGTGTCTTCGGGCGACTCACCGCCTGGCAGAACTGGATCTTCCAACGCCCCAACGCCGTCGGCGAAAAGG GCGCCCTGAAGGTCTATGGCAAAGGCGACAAGGCCCAGTTCGACTGGAACCGCGTCTAG
Upstream 100 bases:
>100_bases AAACATGCATAAAAGTGCTTGACGTCTTTCTGTTATAGGCATTATTATTCGTGTATGAATTCTGGTTCCTGCACTATTTT GCTTATTTTGAGGAGATGAT
Downstream 100 bases:
>100_bases ACACACCAGCTCTCGTTGTGCGGCGCGAGTCCGGGTGGCGCACCGCAACCGAATCCATCCCCCGAATCAGCCTTGTTTTT TGGAGACCATGATGTCCAGC
Product: benzoyl-CoA-dihydrodiol lyase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 552; Mature: 552
Protein sequence:
>552_residues MNIDTRVDYQTNPGRYKHWALKFEGPVATLTADFDENAGLRPGYKLKLNSYDLGVDIELNDAINRIRFEHPEVRTVVVTS AKEKVFCSGANIFMLGVSSHSWKVNFCKFTNETRNGLEDSSKYSGLKFLAAVNGACAGGGYELALACDEIILVDDRSSAV SLPEVPLLGVLPGTGGLTRVTDKKHVRHDLADLFCTSVEGVRGQKAKDWRLVDDIAKPQVFAQKVRERALELAATSDRPA DGKGVMLSPVACVLEADALRYPNVTVEIDRAKRTATWTVKGPTGAQPTDVAGIEAAGAAWYPLQMARELEDAILQMRTNE LDIGTWLIETQGDPAAVLAMDATLLAHQNHWLVRETIGLLRRTFSRLDVSSRSLFALIEPGSCFAGTFLELALACDRSYH LALPDDESGAPKITVGEVNFSLYPMVTEQSRLGRRFYNEQPALDAVRASMGQPLDADAAFALGLVTSNPDDIDWTDEVRI AVEERVSMSPDALTGMEANLRFNGPENMFTRVFGRLTAWQNWIFQRPNAVGEKGALKVYGKGDKAQFDWNRV
Sequences:
>Translated_552_residues MNIDTRVDYQTNPGRYKHWALKFEGPVATLTADFDENAGLRPGYKLKLNSYDLGVDIELNDAINRIRFEHPEVRTVVVTS AKEKVFCSGANIFMLGVSSHSWKVNFCKFTNETRNGLEDSSKYSGLKFLAAVNGACAGGGYELALACDEIILVDDRSSAV SLPEVPLLGVLPGTGGLTRVTDKKHVRHDLADLFCTSVEGVRGQKAKDWRLVDDIAKPQVFAQKVRERALELAATSDRPA DGKGVMLSPVACVLEADALRYPNVTVEIDRAKRTATWTVKGPTGAQPTDVAGIEAAGAAWYPLQMARELEDAILQMRTNE LDIGTWLIETQGDPAAVLAMDATLLAHQNHWLVRETIGLLRRTFSRLDVSSRSLFALIEPGSCFAGTFLELALACDRSYH LALPDDESGAPKITVGEVNFSLYPMVTEQSRLGRRFYNEQPALDAVRASMGQPLDADAAFALGLVTSNPDDIDWTDEVRI AVEERVSMSPDALTGMEANLRFNGPENMFTRVFGRLTAWQNWIFQRPNAVGEKGALKVYGKGDKAQFDWNRV >Mature_552_residues MNIDTRVDYQTNPGRYKHWALKFEGPVATLTADFDENAGLRPGYKLKLNSYDLGVDIELNDAINRIRFEHPEVRTVVVTS AKEKVFCSGANIFMLGVSSHSWKVNFCKFTNETRNGLEDSSKYSGLKFLAAVNGACAGGGYELALACDEIILVDDRSSAV SLPEVPLLGVLPGTGGLTRVTDKKHVRHDLADLFCTSVEGVRGQKAKDWRLVDDIAKPQVFAQKVRERALELAATSDRPA DGKGVMLSPVACVLEADALRYPNVTVEIDRAKRTATWTVKGPTGAQPTDVAGIEAAGAAWYPLQMARELEDAILQMRTNE LDIGTWLIETQGDPAAVLAMDATLLAHQNHWLVRETIGLLRRTFSRLDVSSRSLFALIEPGSCFAGTFLELALACDRSYH LALPDDESGAPKITVGEVNFSLYPMVTEQSRLGRRFYNEQPALDAVRASMGQPLDADAAFALGLVTSNPDDIDWTDEVRI AVEERVSMSPDALTGMEANLRFNGPENMFTRVFGRLTAWQNWIFQRPNAVGEKGALKVYGKGDKAQFDWNRV
Specific function: Catalyzes the ring opening of 2,3-dihydro-2,3- dihydroxybenzoyl-CoA to form 3,4-dehydroadipyl-CoA semialdehyde [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the benzoyl-CoA oxygenase component C family [H]
Homologues:
Organism=Homo sapiens, GI20127408, Length=172, Percent_Identity=33.1395348837209, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI1788682, Length=201, Percent_Identity=33.8308457711443, Blast_Score=83, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17558304, Length=163, Percent_Identity=33.1288343558282, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25144276, Length=180, Percent_Identity=29.4444444444444, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508951, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508953, Length=180, Percent_Identity=29.4444444444444, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017633 - InterPro: IPR001753 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.2.44 [H]
Molecular weight: Translated: 60735; Mature: 60735
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIDTRVDYQTNPGRYKHWALKFEGPVATLTADFDENAGLRPGYKLKLNSYDLGVDIELN CCCCCEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCEEEEEEEEEH DAINRIRFEHPEVRTVVVTSAKEKVFCSGANIFMLGVSSHSWKVNFCKFTNETRNGLEDS HHHHHHCCCCCCEEEEEEECCCCEEEECCCCEEEEEECCCCEEEEEEEECCHHHCCCCCC SKYSGLKFLAAVNGACAGGGYELALACDEIILVDDRSSAVSLPEVPLLGVLPGTGGLTRV CCCCCEEEEEECCCCCCCCCEEEEEEECEEEEEECCCCCCCCCCCCEEEEECCCCCCEEC TDKKHVRHDLADLFCTSVEGVRGQKAKDWRLVDDIAKPQVFAQKVRERALELAATSDRPA CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC DGKGVMLSPVACVLEADALRYPNVTVEIDRAKRTATWTVKGPTGAQPTDVAGIEAAGAAW CCCCEEECCHHEEEECCCEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCC YPLQMARELEDAILQMRTNELDIGTWLIETQGDPAAVLAMDATLLAHQNHWLVRETIGLL CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCHHHHHHHHH RRTFSRLDVSSRSLFALIEPGSCFAGTFLELALACDRSYHLALPDDESGAPKITVGEVNF HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECE SLYPMVTEQSRLGRRFYNEQPALDAVRASMGQPLDADAAFALGLVTSNPDDIDWTDEVRI EEEEEECCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEE AVEERVSMSPDALTGMEANLRFNGPENMFTRVFGRLTAWQNWIFQRPNAVGEKGALKVYG EEEHHCCCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE KGDKAQFDWNRV CCCCCCCCCCCC >Mature Secondary Structure MNIDTRVDYQTNPGRYKHWALKFEGPVATLTADFDENAGLRPGYKLKLNSYDLGVDIELN CCCCCEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCEEEEEEEEEH DAINRIRFEHPEVRTVVVTSAKEKVFCSGANIFMLGVSSHSWKVNFCKFTNETRNGLEDS HHHHHHCCCCCCEEEEEEECCCCEEEECCCCEEEEEECCCCEEEEEEEECCHHHCCCCCC SKYSGLKFLAAVNGACAGGGYELALACDEIILVDDRSSAVSLPEVPLLGVLPGTGGLTRV CCCCCEEEEEECCCCCCCCCEEEEEEECEEEEEECCCCCCCCCCCCEEEEECCCCCCEEC TDKKHVRHDLADLFCTSVEGVRGQKAKDWRLVDDIAKPQVFAQKVRERALELAATSDRPA CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC DGKGVMLSPVACVLEADALRYPNVTVEIDRAKRTATWTVKGPTGAQPTDVAGIEAAGAAW CCCCEEECCHHEEEECCCEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCC YPLQMARELEDAILQMRTNELDIGTWLIETQGDPAAVLAMDATLLAHQNHWLVRETIGLL CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCHHHHHHHHH RRTFSRLDVSSRSLFALIEPGSCFAGTFLELALACDRSYHLALPDDESGAPKITVGEVNF HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEECE SLYPMVTEQSRLGRRFYNEQPALDAVRASMGQPLDADAAFALGLVTSNPDDIDWTDEVRI EEEEEECCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEE AVEERVSMSPDALTGMEANLRFNGPENMFTRVFGRLTAWQNWIFQRPNAVGEKGALKVYG EEEHHCCCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE KGDKAQFDWNRV CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12399500 [H]