| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yjjJ [H]
Identifier: 91787459
GI number: 91787459
Start: 1619805
End: 1621160
Strand: Direct
Name: yjjJ [H]
Synonym: Bpro_1570
Alternate gene names: 91787459
Gene position: 1619805-1621160 (Clockwise)
Preceding gene: 91787458
Following gene: 91787460
Centisome position: 31.15
GC content: 63.27
Gene sequence:
>1356_bases ATGACGACTTCCGAGGACCTGCTCCGAACACTACGAACTTGGCACAAGCTGCCCGCCAAGCAACTGCTTGAGCGGCTTGG CATCAGTCGCGCGACGCTCATGCGCGCAGTTCGTGAGCTTGGCTCGCAGGTAGTTGCTCGCGGGCGGGCGCGCAGGACAG CATACGCTGCCCGCCGTGCGCTGCGCGGCAGTTTGCAGGCGCTGCCGCTCTACCGCATTGACCAGGATGGCCAGGCCCAC GAAGTTGCGATGCTGTATCCGGTCTATCCGGCAGGGTGTGCGCTTGACTTTCTTGAGTCGCTTGACTGGCCGTTGGATGA AGACATGCGGGACGGCTGGTTTGAAGGCCTGCCTTACTTTCTGGACGATATGCGCCCACAAGGATTCTTGGGGCGGCACT TTGCTCGACGTCACGCCGACTTGCTCCAAGTCAGCGCGGACCCCAAGGTTTGGTCGGAGGACGACACGCTGCATGCGCTG ACGTTGTTAGGCAGTGACACGCCAGGCAACTACGTCCTGGGAGAGCCGGCATTGCGCCAGTGGCTGGCCCATTCTCAACA GAACGCACTTCCCCTGGAATCGAGCCAAGTTGTGCCTGCCTACCTGCTCAAGGCCGAAGAGGCTATGACTCACGGGACTG CGGGCTCCTCGGCAGGAGGAGAGTTCCCGAAGTTCACCGCGTTTCGCGAGGTGGCGGGCAAGCCGATCCACGTCATCGTC AAGTTTTCGGGCTCCGATGAGGCGCCCGGAACTGTGCGCTGGTCTGACCTGCTGGTCTGCGAACACTTGGCCCTGTGCGC CGTCGCCGAGCACCTGGGTCTTGAGGCCGCGGTCAGCCGCATCCATCAGGCGGGCGGGCGAACTTTCCTGGAGGTGGAGC GGTTTGACCGCCATGGCAGGCTCGGGCGCTCGCCCGTCTGCTCTTGGTCAGCCTTGAACGCAGCTCTGTTTGGGTTTGCC GGCAAGCCTTGGCCGGAGGGCGGCGCCGCCCTGCTCAGGCAAGGGCTCATCGACACCGAATGCCTGGTCGCCCTGCAACG ACTTTGGTTGTTCGGGCAGCTCATTGCCAACACAGACATGCACGACGGCAACCTGTCGTTCAGGCCCGGGCTTCAACCGG CCCCGGTATATGACATGCTGCCCATGGGGTACGCCCCGGTGCGCGGCGTGGAGCTGCCGGTAAAGGAGTTTGTGCCCCCT CTGCCCCTGCCCGCCGAGAAAGACGCCTGGCTGACGGCTGCCCATGCGGCGGAGCACTTCTGGACAGCAGCAAGCGGCGA CGCGCGAATCAGCAAGAACTTCAGAGCAATTTGTAGCCAAAACGCGAGCAAGGTTCGCAAGGCCTTGTACGGCTGA
Upstream 100 bases:
>100_bases GTTTTAATTTATCGTTTCAATAATCGTTTCCAATTACAATGACTATTGGCGAAATTATCATTCACAAAAATTTTCGTTTA ATCTACTTGTAAATCGTTTC
Downstream 100 bases:
>100_bases GTCCAGGTCGCAAGAATTACGCACGACCGATGGTGGCCGTGCGCGAATCCCCACCAATGATGGGAGAGGACCGCATGGAG AGCGTTGCCGGCGAGATGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 451; Mature: 450
Protein sequence:
>451_residues MTTSEDLLRTLRTWHKLPAKQLLERLGISRATLMRAVRELGSQVVARGRARRTAYAARRALRGSLQALPLYRIDQDGQAH EVAMLYPVYPAGCALDFLESLDWPLDEDMRDGWFEGLPYFLDDMRPQGFLGRHFARRHADLLQVSADPKVWSEDDTLHAL TLLGSDTPGNYVLGEPALRQWLAHSQQNALPLESSQVVPAYLLKAEEAMTHGTAGSSAGGEFPKFTAFREVAGKPIHVIV KFSGSDEAPGTVRWSDLLVCEHLALCAVAEHLGLEAAVSRIHQAGGRTFLEVERFDRHGRLGRSPVCSWSALNAALFGFA GKPWPEGGAALLRQGLIDTECLVALQRLWLFGQLIANTDMHDGNLSFRPGLQPAPVYDMLPMGYAPVRGVELPVKEFVPP LPLPAEKDAWLTAAHAAEHFWTAASGDARISKNFRAICSQNASKVRKALYG
Sequences:
>Translated_451_residues MTTSEDLLRTLRTWHKLPAKQLLERLGISRATLMRAVRELGSQVVARGRARRTAYAARRALRGSLQALPLYRIDQDGQAH EVAMLYPVYPAGCALDFLESLDWPLDEDMRDGWFEGLPYFLDDMRPQGFLGRHFARRHADLLQVSADPKVWSEDDTLHAL TLLGSDTPGNYVLGEPALRQWLAHSQQNALPLESSQVVPAYLLKAEEAMTHGTAGSSAGGEFPKFTAFREVAGKPIHVIV KFSGSDEAPGTVRWSDLLVCEHLALCAVAEHLGLEAAVSRIHQAGGRTFLEVERFDRHGRLGRSPVCSWSALNAALFGFA GKPWPEGGAALLRQGLIDTECLVALQRLWLFGQLIANTDMHDGNLSFRPGLQPAPVYDMLPMGYAPVRGVELPVKEFVPP LPLPAEKDAWLTAAHAAEHFWTAASGDARISKNFRAICSQNASKVRKALYG >Mature_450_residues TTSEDLLRTLRTWHKLPAKQLLERLGISRATLMRAVRELGSQVVARGRARRTAYAARRALRGSLQALPLYRIDQDGQAHE VAMLYPVYPAGCALDFLESLDWPLDEDMRDGWFEGLPYFLDDMRPQGFLGRHFARRHADLLQVSADPKVWSEDDTLHALT LLGSDTPGNYVLGEPALRQWLAHSQQNALPLESSQVVPAYLLKAEEAMTHGTAGSSAGGEFPKFTAFREVAGKPIHVIVK FSGSDEAPGTVRWSDLLVCEHLALCAVAEHLGLEAAVSRIHQAGGRTFLEVERFDRHGRLGRSPVCSWSALNAALFGFAG KPWPEGGAALLRQGLIDTECLVALQRLWLFGQLIANTDMHDGNLSFRPGLQPAPVYDMLPMGYAPVRGVELPVKEFVPPL PLPAEKDAWLTAAHAAEHFWTAASGDARISKNFRAICSQNASKVRKALYG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790845, Length=434, Percent_Identity=37.3271889400922, Blast_Score=265, Evalue=5e-72,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012893 - InterPro: IPR012894 [H]
Pfam domain/function: PF07804 HipA_C; PF07805 HipA_N [H]
EC number: NA
Molecular weight: Translated: 49697; Mature: 49566
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSEDLLRTLRTWHKLPAKQLLERLGISRATLMRAVRELGSQVVARGRARRTAYAARRA CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGSLQALPLYRIDQDGQAHEVAMLYPVYPAGCALDFLESLDWPLDEDMRDGWFEGLPYF HHHHHHHCCEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCHHH LDDMRPQGFLGRHFARRHADLLQVSADPKVWSEDDTLHALTLLGSDTPGNYVLGEPALRQ HHCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEECCCCCCCEEECCHHHHH WLAHSQQNALPLESSQVVPAYLLKAEEAMTHGTAGSSAGGEFPKFTAFREVAGKPIHVIV HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEE KFSGSDEAPGTVRWSDLLVCEHLALCAVAEHLGLEAAVSRIHQAGGRTFLEVERFDRHGR EECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEHHHHHHCCC LGRSPVCSWSALNAALFGFAGKPWPEGGAALLRQGLIDTECLVALQRLWLFGQLIANTDM CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC HDGNLSFRPGLQPAPVYDMLPMGYAPVRGVELPVKEFVPPLPLPAEKDAWLTAAHAAEHF CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHH WTAASGDARISKNFRAICSQNASKVRKALYG HCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure TTSEDLLRTLRTWHKLPAKQLLERLGISRATLMRAVRELGSQVVARGRARRTAYAARRA CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGSLQALPLYRIDQDGQAHEVAMLYPVYPAGCALDFLESLDWPLDEDMRDGWFEGLPYF HHHHHHHCCEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCHHH LDDMRPQGFLGRHFARRHADLLQVSADPKVWSEDDTLHALTLLGSDTPGNYVLGEPALRQ HHCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEECCCCCCCEEECCHHHHH WLAHSQQNALPLESSQVVPAYLLKAEEAMTHGTAGSSAGGEFPKFTAFREVAGKPIHVIV HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEE KFSGSDEAPGTVRWSDLLVCEHLALCAVAEHLGLEAAVSRIHQAGGRTFLEVERFDRHGR EECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEHHHHHHCCC LGRSPVCSWSALNAALFGFAGKPWPEGGAALLRQGLIDTECLVALQRLWLFGQLIANTDM CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC HDGNLSFRPGLQPAPVYDMLPMGYAPVRGVELPVKEFVPPLPLPAEKDAWLTAAHAAEHF CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHH WTAASGDARISKNFRAICSQNASKVRKALYG HCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 3299264 [H]