| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787443
Identifier: 91787443
GI number: 91787443
Start: 1605461
End: 1606924
Strand: Direct
Name: 91787443
Synonym: Bpro_1553
Alternate gene names: NA
Gene position: 1605461-1606924 (Clockwise)
Preceding gene: 91787439
Following gene: 91787444
Centisome position: 30.87
GC content: 62.09
Gene sequence:
>1464_bases ATGACCAAACAAGACCAAACCGCTCTCCACGGCAGCAAAGAACTCAGCGCACGGGAAGTCAACCGCCTGATCTCGTCAGA ACTCAGAAGCGCCAAGCGCATCGCCCAAGCCAAACGAGCAGGCTCCGGCACGGGCGTGAGTGTCCTGCAGCGCGTCCAGC AACGCTACAAAAGGAACCCCAAGGCGCAAATGGCCATGTTCTTCGGCGAATTCACCCTGCGCGCCGGAACCGGCAGAGCA CGCCCCGTATCAGAACGCACCCGCACCGTCTACGCTGACGAGCTCATCCGCATGCTCGATGAACTCAGTGAACTTCGCGC AGGCGTGCAGGAAATAGGCGAAATCGGCAAAAGCCATGCCGTCAAACTCATCAAACACTGGGGCGCGCGCGGCCAGGCCG CCTCCACCATCCAGAACAAGATCAGCATCCTGCGCCGCTTCCTCACGTTCATCGGAAAAGACAGCGCCATCCCCAAGGGA GAGGACTTGAAGACCTGGCTCAACCGCCAGGGTGTCACCGCACCTATTACCCGCCAGAACATCCCCACCGAGAGCAAGGC ATGGGATGAGAACCAGGTTGACCTGCACAAGGTGCTGGCCGAGCTGAGCAAGGAAAGCGCCATCACCGCCATCCAACTGG AGGTACAGGCGGCATTCGGCCTGCGCATGAAGGAATCCATCCAGCTCAATCCCCAGGCGGCAGACTGCGGCACCTTCCTG CGCGTCCTACACGGCACCAAAGGCGGCTTGCCACGCGACGTGGACTTTGACGAGGACCCTGCCATGCGCGAGTGGCAGAG AGATGTACTTGAACGGGCAAAACTCCACGCCCAGCAAAATCGCAAGGGAACCCTGTCCATCCAGGGCAAACGCCTGGATC AGAGCAAGGCCCACTTCTATTACCAGTGCCGCAAAATCGGCATCACCCGCGACCAGCTCGGCGTCACCGCCCATGGCCTG CGCCACCAGTACGCCGCCCGCCGCTATGCCCGACTGGCAGGCATGGCCGCGCCAGTGACCAGGAACGCCCCTCTGCACGT CACCGACGAGGTGCGCAGCGCCGATCTGGCCGCCCGGGAACAGGTCAGCCGTGAACTCGGCCACTTCCGCCCCGACATCA CTCAGGCCTACACCGGCTCCCTGCCCATGATGGAAAAGGGCCGCAAACAGCGCATCCGTGACTGGGTCGAACGCACAGAG GAGAACCCTGAGTTCCAGGCTGTCATGAAAGACGCCGGCGTTGTCTCCGTCTGGATGGGGGGACGCTTTGCCATGGGTCT GCCAGTCGAAGCCAGCGAGAAATTCCGGCTCATCGTCCAGACAGCCAGCCGCCAGCCCCTGGATGGGGATGCCCGCTCCA TGCTCAAACAGCGCCTCATGGGCATGTACGACCGTGCCATCGACCTCAGCGAGCACTTTGAAGCCGGCCAGCCCGATGAC GCATTGGAACTCATGGTCCGCTGA
Upstream 100 bases:
>100_bases AGGCATGTCACGGCCAGCACTGGACCAACAGACACCTACTTGATGGGCTCCGTGACTTCCATTTCAAACCAGTAAGTACA TCCAAACCGAAAGCGTAGAT
Downstream 100 bases:
>100_bases GTCAGAACGGCACCACAGCCCCACACCCCGGATAACTCAGAGCCTCAGCCCACCCTCAGAAAGGAAAACACTATGTCAGC AAGCAGTACGCCCGACCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: Fis Family Transcriptional Regulator; Poisomerase/Recombinase/Integrase; DNA Breaking-Rejoining Protein; Tyrosine Recombinase; Phage Integrase Family Protein; Phage Integrase N-Terminal SAM-Like; Regulatory Protein; Integrase Protein; Phage Integrase N-Terminal SAM-Like Protein; Transcriptional Regulator Fis Family
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MTKQDQTALHGSKELSAREVNRLISSELRSAKRIAQAKRAGSGTGVSVLQRVQQRYKRNPKAQMAMFFGEFTLRAGTGRA RPVSERTRTVYADELIRMLDELSELRAGVQEIGEIGKSHAVKLIKHWGARGQAASTIQNKISILRRFLTFIGKDSAIPKG EDLKTWLNRQGVTAPITRQNIPTESKAWDENQVDLHKVLAELSKESAITAIQLEVQAAFGLRMKESIQLNPQAADCGTFL RVLHGTKGGLPRDVDFDEDPAMREWQRDVLERAKLHAQQNRKGTLSIQGKRLDQSKAHFYYQCRKIGITRDQLGVTAHGL RHQYAARRYARLAGMAAPVTRNAPLHVTDEVRSADLAAREQVSRELGHFRPDITQAYTGSLPMMEKGRKQRIRDWVERTE ENPEFQAVMKDAGVVSVWMGGRFAMGLPVEASEKFRLIVQTASRQPLDGDARSMLKQRLMGMYDRAIDLSEHFEAGQPDD ALELMVR
Sequences:
>Translated_487_residues MTKQDQTALHGSKELSAREVNRLISSELRSAKRIAQAKRAGSGTGVSVLQRVQQRYKRNPKAQMAMFFGEFTLRAGTGRA RPVSERTRTVYADELIRMLDELSELRAGVQEIGEIGKSHAVKLIKHWGARGQAASTIQNKISILRRFLTFIGKDSAIPKG EDLKTWLNRQGVTAPITRQNIPTESKAWDENQVDLHKVLAELSKESAITAIQLEVQAAFGLRMKESIQLNPQAADCGTFL RVLHGTKGGLPRDVDFDEDPAMREWQRDVLERAKLHAQQNRKGTLSIQGKRLDQSKAHFYYQCRKIGITRDQLGVTAHGL RHQYAARRYARLAGMAAPVTRNAPLHVTDEVRSADLAAREQVSRELGHFRPDITQAYTGSLPMMEKGRKQRIRDWVERTE ENPEFQAVMKDAGVVSVWMGGRFAMGLPVEASEKFRLIVQTASRQPLDGDARSMLKQRLMGMYDRAIDLSEHFEAGQPDD ALELMVR >Mature_486_residues TKQDQTALHGSKELSAREVNRLISSELRSAKRIAQAKRAGSGTGVSVLQRVQQRYKRNPKAQMAMFFGEFTLRAGTGRAR PVSERTRTVYADELIRMLDELSELRAGVQEIGEIGKSHAVKLIKHWGARGQAASTIQNKISILRRFLTFIGKDSAIPKGE DLKTWLNRQGVTAPITRQNIPTESKAWDENQVDLHKVLAELSKESAITAIQLEVQAAFGLRMKESIQLNPQAADCGTFLR VLHGTKGGLPRDVDFDEDPAMREWQRDVLERAKLHAQQNRKGTLSIQGKRLDQSKAHFYYQCRKIGITRDQLGVTAHGLR HQYAARRYARLAGMAAPVTRNAPLHVTDEVRSADLAAREQVSRELGHFRPDITQAYTGSLPMMEKGRKQRIRDWVERTEE NPEFQAVMKDAGVVSVWMGGRFAMGLPVEASEKFRLIVQTASRQPLDGDARSMLKQRLMGMYDRAIDLSEHFEAGQPDDA LELMVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54830; Mature: 54698
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKQDQTALHGSKELSAREVNRLISSELRSAKRIAQAKRAGSGTGVSVLQRVQQRYKRNP CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC KAQMAMFFGEFTLRAGTGRARPVSERTRTVYADELIRMLDELSELRAGVQEIGEIGKSHA HHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKLIKHWGARGQAASTIQNKISILRRFLTFIGKDSAIPKGEDLKTWLNRQGVTAPITRQN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCC IPTESKAWDENQVDLHKVLAELSKESAITAIQLEVQAAFGLRMKESIQLNPQAADCGTFL CCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEHHHHCCCHHHCCCCCCCHHHHHHHH RVLHGTKGGLPRDVDFDEDPAMREWQRDVLERAKLHAQQNRKGTLSIQGKRLDQSKAHFY HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHH YQCRKIGITRDQLGVTAHGLRHQYAARRYARLAGMAAPVTRNAPLHVTDEVRSADLAARE HHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHH QVSRELGHFRPDITQAYTGSLPMMEKGRKQRIRDWVERTEENPEFQAVMKDAGVVSVWMG HHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEC GRFAMGLPVEASEKFRLIVQTASRQPLDGDARSMLKQRLMGMYDRAIDLSEHFEAGQPDD CEEEECCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCH ALELMVR HHHHHCC >Mature Secondary Structure TKQDQTALHGSKELSAREVNRLISSELRSAKRIAQAKRAGSGTGVSVLQRVQQRYKRNP CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC KAQMAMFFGEFTLRAGTGRARPVSERTRTVYADELIRMLDELSELRAGVQEIGEIGKSHA HHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKLIKHWGARGQAASTIQNKISILRRFLTFIGKDSAIPKGEDLKTWLNRQGVTAPITRQN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCC IPTESKAWDENQVDLHKVLAELSKESAITAIQLEVQAAFGLRMKESIQLNPQAADCGTFL CCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEHHHHCCCHHHCCCCCCCHHHHHHHH RVLHGTKGGLPRDVDFDEDPAMREWQRDVLERAKLHAQQNRKGTLSIQGKRLDQSKAHFY HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHH YQCRKIGITRDQLGVTAHGLRHQYAARRYARLAGMAAPVTRNAPLHVTDEVRSADLAARE HHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHH QVSRELGHFRPDITQAYTGSLPMMEKGRKQRIRDWVERTEENPEFQAVMKDAGVVSVWMG HHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEC GRFAMGLPVEASEKFRLIVQTASRQPLDGDARSMLKQRLMGMYDRAIDLSEHFEAGQPDD CEEEECCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCH ALELMVR HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA