| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rhmT [H]
Identifier: 91787386
GI number: 91787386
Start: 1547505
End: 1548815
Strand: Direct
Name: rhmT [H]
Synonym: Bpro_1492
Alternate gene names: 91787386
Gene position: 1547505-1548815 (Clockwise)
Preceding gene: 91787385
Following gene: 91787387
Centisome position: 29.76
GC content: 64.3
Gene sequence:
>1311_bases ATGAACCCCCAAATCAACCCCGAACTCGAGCGGGTCACGGCCAAGGCCATTCGCCGGCTCGTGCCTTTTCTTTTGCTGAT GTATGTGCTGGCCTTTCTGGACCGCGCCAACATCGGCTTTGCCAAGCAGGCCTTCCAGCTCGACACCGGCGTGTCGAACG CCGCTTATGCCTTCGGCGCCGGCATCTTCTTCATTGGCTACGCGCTGTTCGAAGTTCCCAGCAACCTGATCATGCACCGC GTCGGCGCCCGCGCCTGGATGTGCCGCATCATGGTCACGTGGGGGCTGGTGTCGGCGGCGCTGATGTTCGTCACCAGCGA GACCTCGTTTTACGTGCTGCGCTTTCTGCTCGGCGTGGCCGAAGCGGGCTTCTTTCCCGGCGTGATCTATTTCCTCACGA AGTGGTTCCCGGTCCATGCGCGGACCCGCGTGATCGGCATGTTTTATTTCGGCGCGCCACTGGCTTTCATTTTTGGCAGC CCGCTGTCGGGACTCCTGCTGGAAATGCAGGGCGCGTTCGGCCTGCACGGCTGGCAGTGGATGTTTCTCATTGAAGGCCT GCTGGCCAGCGCGGTCGGCGTCTGGGCCTTCTGGTACCTGGACAACCGGCCTGAAGATGCGAAGTGGCTGACGCTGGCCG AGCGTGCCACGCTGGCCACGGCAATTGCCCGGGAAGAGCAGCACAAGGCCGAGCATGGACCGCGCAGCGTGCTGGCCGCG CTGACCAATGGGCGCGTGCTCTTCCTGGCGGCAATCTATTTCATCATCCAGATGAGCGTTTACGGCGTCGTGTTCTACCT GCCCACCCAAGTAGCGACACTGCTGGGCAAGAAGGTCGGCTTCGACGTCGGCCTGGTGACGGCCATTCCCTGGATTTGCG CCGTCATTGCCGTCTACCTGATTCCCCGCCTGGCCGAGCGCCGGCAGCAGCACGCCGGCATGGCCTGCGCGACGCTGGTG GTTTGCGCCGCGGGCATTGCCCTGTCGGTGTCGGCCGGCTCACCGCTGCTGTCGTTGATTGCGCTGTGCTTTGCCGCCGC CGGCTTCATCGCCGTCCAGCCCCTGTTCTGGACCTTCCCGACGGCCTACCTTGGTGGCGCTGCAGCGGCCGGTGGCATTG CACTGATCAACTCGATCGGCTCGCTGGGCGGCTTCTTTGCACCGAACGTCAAGACCTGGGCCGAAAAAGCTTTCGAGTCG CCAAGCGCCGGGCTGTACCTGCTGGCCGGTACAACGCTGCTGGGCGCAGTGCTGTTCCTGGCGCTGCGCGCCCGGCAGCC CGTAGCAGTCGCAGTGGTCCGCTCGGCCTGA
Upstream 100 bases:
>100_bases AGCCCAAGCGCGGCGCCGGCCCCCAGGCTGGCTTGCGCTGCCGCATGAGCAAGAAGCAGCCGCAGAGCTGCACCACACCC CAACCCCGGAGACACATTTC
Downstream 100 bases:
>100_bases CCCCGTTCACCTTCATCCAGCAGCAACTCCAGAAGCAACACAAGCAATCATGAACAACATGCCGACCATCAAGCACGTGC GTGCCTTCACCGTCCGCGGC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 436
Protein sequence:
>436_residues MNPQINPELERVTAKAIRRLVPFLLLMYVLAFLDRANIGFAKQAFQLDTGVSNAAYAFGAGIFFIGYALFEVPSNLIMHR VGARAWMCRIMVTWGLVSAALMFVTSETSFYVLRFLLGVAEAGFFPGVIYFLTKWFPVHARTRVIGMFYFGAPLAFIFGS PLSGLLLEMQGAFGLHGWQWMFLIEGLLASAVGVWAFWYLDNRPEDAKWLTLAERATLATAIAREEQHKAEHGPRSVLAA LTNGRVLFLAAIYFIIQMSVYGVVFYLPTQVATLLGKKVGFDVGLVTAIPWICAVIAVYLIPRLAERRQQHAGMACATLV VCAAGIALSVSAGSPLLSLIALCFAAAGFIAVQPLFWTFPTAYLGGAAAAGGIALINSIGSLGGFFAPNVKTWAEKAFES PSAGLYLLAGTTLLGAVLFLALRARQPVAVAVVRSA
Sequences:
>Translated_436_residues MNPQINPELERVTAKAIRRLVPFLLLMYVLAFLDRANIGFAKQAFQLDTGVSNAAYAFGAGIFFIGYALFEVPSNLIMHR VGARAWMCRIMVTWGLVSAALMFVTSETSFYVLRFLLGVAEAGFFPGVIYFLTKWFPVHARTRVIGMFYFGAPLAFIFGS PLSGLLLEMQGAFGLHGWQWMFLIEGLLASAVGVWAFWYLDNRPEDAKWLTLAERATLATAIAREEQHKAEHGPRSVLAA LTNGRVLFLAAIYFIIQMSVYGVVFYLPTQVATLLGKKVGFDVGLVTAIPWICAVIAVYLIPRLAERRQQHAGMACATLV VCAAGIALSVSAGSPLLSLIALCFAAAGFIAVQPLFWTFPTAYLGGAAAAGGIALINSIGSLGGFFAPNVKTWAEKAFES PSAGLYLLAGTTLLGAVLFLALRARQPVAVAVVRSA >Mature_436_residues MNPQINPELERVTAKAIRRLVPFLLLMYVLAFLDRANIGFAKQAFQLDTGVSNAAYAFGAGIFFIGYALFEVPSNLIMHR VGARAWMCRIMVTWGLVSAALMFVTSETSFYVLRFLLGVAEAGFFPGVIYFLTKWFPVHARTRVIGMFYFGAPLAFIFGS PLSGLLLEMQGAFGLHGWQWMFLIEGLLASAVGVWAFWYLDNRPEDAKWLTLAERATLATAIAREEQHKAEHGPRSVLAA LTNGRVLFLAAIYFIIQMSVYGVVFYLPTQVATLLGKKVGFDVGLVTAIPWICAVIAVYLIPRLAERRQQHAGMACATLV VCAAGIALSVSAGSPLLSLIALCFAAAGFIAVQPLFWTFPTAYLGGAAAAGGIALINSIGSLGGFFAPNVKTWAEKAFES PSAGLYLLAGTTLLGAVLFLALRARQPVAVAVVRSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Escherichia coli, GI87082071, Length=421, Percent_Identity=50.5938242280285, Blast_Score=417, Evalue=1e-118, Organism=Escherichia coli, GI87082320, Length=445, Percent_Identity=24.2696629213483, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI2367379, Length=220, Percent_Identity=25.9090909090909, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322025, Length=250, Percent_Identity=27.2, Blast_Score=94, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6319876, Length=223, Percent_Identity=24.6636771300448, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6322612, Length=263, Percent_Identity=21.6730038022814, Blast_Score=67, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324410, Length=153, Percent_Identity=26.1437908496732, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6321698, Length=273, Percent_Identity=21.978021978022, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323032, Length=217, Percent_Identity=26.2672811059908, Blast_Score=63, Evalue=1e-10, Organism=Drosophila melanogaster, GI24658696, Length=314, Percent_Identity=25.796178343949, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 47082; Mature: 47082
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPQINPELERVTAKAIRRLVPFLLLMYVLAFLDRANIGFAKQAFQLDTGVSNAAYAFGA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHH GIFFIGYALFEVPSNLIMHRVGARAWMCRIMVTWGLVSAALMFVTSETSFYVLRFLLGVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EAGFFPGVIYFLTKWFPVHARTRVIGMFYFGAPLAFIFGSPLSGLLLEMQGAFGLHGWQW HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH MFLIEGLLASAVGVWAFWYLDNRPEDAKWLTLAERATLATAIAREEQHKAEHGPRSVLAA HHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LTNGRVLFLAAIYFIIQMSVYGVVFYLPTQVATLLGKKVGFDVGLVTAIPWICAVIAVYL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IPRLAERRQQHAGMACATLVVCAAGIALSVSAGSPLLSLIALCFAAAGFIAVQPLFWTFP HHHHHHHHHHHCCHHHHHHHHHHHCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TAYLGGAAAAGGIALINSIGSLGGFFAPNVKTWAEKAFESPSAGLYLLAGTTLLGAVLFL HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHH ALRARQPVAVAVVRSA HHHCCCCEEEEEEECC >Mature Secondary Structure MNPQINPELERVTAKAIRRLVPFLLLMYVLAFLDRANIGFAKQAFQLDTGVSNAAYAFGA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHH GIFFIGYALFEVPSNLIMHRVGARAWMCRIMVTWGLVSAALMFVTSETSFYVLRFLLGVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EAGFFPGVIYFLTKWFPVHARTRVIGMFYFGAPLAFIFGSPLSGLLLEMQGAFGLHGWQW HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH MFLIEGLLASAVGVWAFWYLDNRPEDAKWLTLAERATLATAIAREEQHKAEHGPRSVLAA HHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LTNGRVLFLAAIYFIIQMSVYGVVFYLPTQVATLLGKKVGFDVGLVTAIPWICAVIAVYL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH IPRLAERRQQHAGMACATLVVCAAGIALSVSAGSPLLSLIALCFAAAGFIAVQPLFWTFP HHHHHHHHHHHCCHHHHHHHHHHHCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TAYLGGAAAAGGIALINSIGSLGGFFAPNVKTWAEKAFESPSAGLYLLAGTTLLGAVLFL HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHH ALRARQPVAVAVVRSA HHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]