| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yjiJ [H]
Identifier: 91787382
GI number: 91787382
Start: 1543348
End: 1544601
Strand: Direct
Name: yjiJ [H]
Synonym: Bpro_1488
Alternate gene names: 91787382
Gene position: 1543348-1544601 (Clockwise)
Preceding gene: 91787381
Following gene: 91787384
Centisome position: 29.68
GC content: 70.33
Gene sequence:
>1254_bases ATGGCACTGATCCCGCAGCCGCAGCCGCAGCGGACGCCCGCATCGCCTGGCCCCATCGCCCTGGCCGGGCTGGTGTCGCT GGCCGTGGCCATGGGCATAGGCCGCTTTGCCTTCACGCCGCTCCTGCCCATGATGCTGAACGACGGCGTCGTCGATCTGC CATCGGCCAGCTGGCTCGCCAGTGCCAACTACTTCGGTTACATGCTGGGCGCCTTGCTGTGCACGCTGCAGCCCTGGCTG TGGGCCCGGTTCCGGGGCTTGCCGTCGCTGGCCTATGTGGCCCTGGTGCGCGCCGGGCTGGTGGCCACCGGTGCGCTGAC CCTGGCCATGGCCTGGCAGCAGCCTGCGGCCTGGCCGGCGCTGCGCTTCGCCGCCGGCGTGACCAGCGCGGTGGTGTTTG TGTTCACCTCGGGCTGGTGCCTGTCGCGGCTGGCCCGGCTCGGCACGCCGGCGCTGGGGGGCTTGATATACGCCGGTCCG GGCGCGGGCATTGTGGTGAGCGGCCTGTTTGCCAGCGGCATGGTGGCCTGGCACTGGACGGCTGCGACCGGTTGGGCCAT TTTTGGCGTGCTGGCTTTTGGGCTGGCGGCCGCCGTATGGCGCATCCTGCGAGGGGGCGACGAGCGTCTGGTGGCCCTGG GCGCGCGCGCGACCGGCTCGTCCGGCGACACGCCGGTCCGGCACGGCCGGGGCGAGATGGTGCTGTTGGCGCTGGCCTAC GGGCTGGCGGGCTTCGGCTACATCATCACCGCCACGTTTTTGCCGGTGATTGCCCGCACCGCGCTGCCGGGATCGGCATG GCTGGACCTGTTCTGGCCCATCTTCGGGCTGGGGGTGATGGTGGGTGCGCTGCTGGCCACGCGCATTTCACCCCGCATCG ACTTTCGTCTCTTGCTGGCAGGCTGCTATGTCACGCAGGCGCTTGGCATTGCAGCCAGTATCTGGAGCCCCAGCCTGGCC GGTTTTGCCGGGGGCAGCCTGCTGCTCGGCCTGCCGTTCACGGCGATCACTTTCTTCGCAATGCAGGAGGTACGCCGCCT GCGCCCCGTCACCGCGGCCAGTTTCATGGGCCTGCTCACCGCCACCTACGGTGTGGGACAAATCCTGGGGCCGCCACTGG TGGCCGTGCTGCTCAGGCACACCAGCAGCCCGGGTCAAGGCTTCACGCTGTCGCTGGAAATTGCGGCCGCCACGCTGCTG GCCGGCGCGGCCATCTACGGCTGGATGACCCGGGCCTACCCCCGGCCGGCGTGA
Upstream 100 bases:
>100_bases CCAACGTCTGGACGAAACCTTTGAAACCTTTCAATGAGCGGGTCGCTGCGCCGGCCCAGCGAGAGGTGTCGTTGATGCTG TCGATGATGAATTTCCAGGC
Downstream 100 bases:
>100_bases ACCCGGCCCCGGGTCGGGCGAGCGTCAGGGCGACGCGGGCGCCTGCCGCCGCCCCCGCCGCGGCGCCGGCACTGCCGCTG GTTCGGCGAACTGGTGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MALIPQPQPQRTPASPGPIALAGLVSLAVAMGIGRFAFTPLLPMMLNDGVVDLPSASWLASANYFGYMLGALLCTLQPWL WARFRGLPSLAYVALVRAGLVATGALTLAMAWQQPAAWPALRFAAGVTSAVVFVFTSGWCLSRLARLGTPALGGLIYAGP GAGIVVSGLFASGMVAWHWTAATGWAIFGVLAFGLAAAVWRILRGGDERLVALGARATGSSGDTPVRHGRGEMVLLALAY GLAGFGYIITATFLPVIARTALPGSAWLDLFWPIFGLGVMVGALLATRISPRIDFRLLLAGCYVTQALGIAASIWSPSLA GFAGGSLLLGLPFTAITFFAMQEVRRLRPVTAASFMGLLTATYGVGQILGPPLVAVLLRHTSSPGQGFTLSLEIAAATLL AGAAIYGWMTRAYPRPA
Sequences:
>Translated_417_residues MALIPQPQPQRTPASPGPIALAGLVSLAVAMGIGRFAFTPLLPMMLNDGVVDLPSASWLASANYFGYMLGALLCTLQPWL WARFRGLPSLAYVALVRAGLVATGALTLAMAWQQPAAWPALRFAAGVTSAVVFVFTSGWCLSRLARLGTPALGGLIYAGP GAGIVVSGLFASGMVAWHWTAATGWAIFGVLAFGLAAAVWRILRGGDERLVALGARATGSSGDTPVRHGRGEMVLLALAY GLAGFGYIITATFLPVIARTALPGSAWLDLFWPIFGLGVMVGALLATRISPRIDFRLLLAGCYVTQALGIAASIWSPSLA GFAGGSLLLGLPFTAITFFAMQEVRRLRPVTAASFMGLLTATYGVGQILGPPLVAVLLRHTSSPGQGFTLSLEIAAATLL AGAAIYGWMTRAYPRPA >Mature_416_residues ALIPQPQPQRTPASPGPIALAGLVSLAVAMGIGRFAFTPLLPMMLNDGVVDLPSASWLASANYFGYMLGALLCTLQPWLW ARFRGLPSLAYVALVRAGLVATGALTLAMAWQQPAAWPALRFAAGVTSAVVFVFTSGWCLSRLARLGTPALGGLIYAGPG AGIVVSGLFASGMVAWHWTAATGWAIFGVLAFGLAAAVWRILRGGDERLVALGARATGSSGDTPVRHGRGEMVLLALAYG LAGFGYIITATFLPVIARTALPGSAWLDLFWPIFGLGVMVGALLATRISPRIDFRLLLAGCYVTQALGIAASIWSPSLAG FAGGSLLLGLPFTAITFFAMQEVRRLRPVTAASFMGLLTATYGVGQILGPPLVAVLLRHTSSPGQGFTLSLEIAAATLLA GAAIYGWMTRAYPRPA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790788, Length=389, Percent_Identity=30.8483290488432, Blast_Score=115, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010645 - InterPro: IPR016196 [H]
Pfam domain/function: PF06779 DUF1228 [H]
EC number: NA
Molecular weight: Translated: 43399; Mature: 43268
Theoretical pI: Translated: 11.10; Mature: 11.10
Prosite motif: PS00104 EPSP_SYNTHASE_1 ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALIPQPQPQRTPASPGPIALAGLVSLAVAMGIGRFAFTPLLPMMLNDGVVDLPSASWLA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHH SANYFGYMLGALLCTLQPWLWARFRGLPSLAYVALVRAGLVATGALTLAMAWQQPAAWPA HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LRFAAGVTSAVVFVFTSGWCLSRLARLGTPALGGLIYAGPGAGIVVSGLFASGMVAWHWT HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCEEEEEEH AATGWAIFGVLAFGLAAAVWRILRGGDERLVALGARATGSSGDTPVRHGRGEMVLLALAY HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHH GLAGFGYIITATFLPVIARTALPGSAWLDLFWPIFGLGVMVGALLATRISPRIDFRLLLA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH GCYVTQALGIAASIWSPSLAGFAGGSLLLGLPFTAITFFAMQEVRRLRPVTAASFMGLLT HHHHHHHHHHHHHHCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ATYGVGQILGPPLVAVLLRHTSSPGQGFTLSLEIAAATLLAGAAIYGWMTRAYPRPA HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ALIPQPQPQRTPASPGPIALAGLVSLAVAMGIGRFAFTPLLPMMLNDGVVDLPSASWLA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHH SANYFGYMLGALLCTLQPWLWARFRGLPSLAYVALVRAGLVATGALTLAMAWQQPAAWPA HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LRFAAGVTSAVVFVFTSGWCLSRLARLGTPALGGLIYAGPGAGIVVSGLFASGMVAWHWT HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCEEEEEEH AATGWAIFGVLAFGLAAAVWRILRGGDERLVALGARATGSSGDTPVRHGRGEMVLLALAY HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHH GLAGFGYIITATFLPVIARTALPGSAWLDLFWPIFGLGVMVGALLATRISPRIDFRLLLA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH GCYVTQALGIAASIWSPSLAGFAGGSLLLGLPFTAITFFAMQEVRRLRPVTAASFMGLLT HHHHHHHHHHHHHHCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ATYGVGQILGPPLVAVLLRHTSSPGQGFTLSLEIAAATLLAGAAIYGWMTRAYPRPA HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]