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The map label for this gene is ydfH [H]

Identifier: 91787320

GI number: 91787320

Start: 1472638

End: 1473303

Strand: Reverse

Name: ydfH [H]

Synonym: Bpro_1425

Alternate gene names: 91787320

Gene position: 1473303-1472638 (Counterclockwise)

Preceding gene: 91787323

Following gene: 91787319

Centisome position: 28.33

GC content: 61.26

Gene sequence:

>666_bases
ATGGAATCATCCACCACCCATGCCATCGTCGAAGCCCTGACCAAGGCCATTGTGGAGCACCGGCTGCACCCGGGCACCAA
GCTGGCCGAACAAAAACTGGCCGATCATTTCGGCGTGTCGCGCACGCTGGTGCGGCAGGCACTGTTCCAGCTGTCCCAAA
ACCGCCTGATCCGCCTGGAGCCCGCCCGCGGCGCATTCGTGGCCGCACCCTCGGTGCCCGAAGCCCGGCAGGTATTTGCG
GTGCGGCGCATGCTGGAGGCTGAAATGACGCGAGCCTTTGTTCGCGATGTCACGCCCGCCAAGATCAAGGCGCTCAAGGA
CCATGTCAACCAGGAAAAATCGGCCGTTGAGCGCAATGATGTGCCCGGCCGCACCGAACTGCTGGGTGACTTCCATGTGC
GCATGGCCGAACTCATGGGCAACGAGGTTCTGGCTCAAATACTCGGCGAGCTGATTTCGCGCTGCGCGCTCATTACCCTG
ATGTACCAGACGGCCAGCGCCGCCGAACACTCCAACGACGAACACGCCGAAATCGTCAAGGCCCTGGCGGCTAAAGACGA
AGCGCTTGCCGTGCGCCTGATGACCGAGCATTTGCTGCACGTCGAGCAAAACCTGGCCTTTGACCGCAAGGTACCCACCA
ACGATATTTCGATGGCACTGTCATGA

Upstream 100 bases:

>100_bases
CAGGCCCATGGCATTCCTTCAGGGTTGGGTTGTGAAAGGCTGAGAAAAATGGTTTACCAAAATTGTATACAGTTTTTGGA
TTTGGGGCTATGATGTCCGC

Downstream 100 bases:

>100_bases
ACACCTACGATTCCACTGCACCCTATCCCCGTGATTTGGTCGGTTACGGCCGCAACCCGCCGCATGCCCGGTGGCCAGGC
CAGGCGCGCATTGCCGTGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MESSTTHAIVEALTKAIVEHRLHPGTKLAEQKLADHFGVSRTLVRQALFQLSQNRLIRLEPARGAFVAAPSVPEARQVFA
VRRMLEAEMTRAFVRDVTPAKIKALKDHVNQEKSAVERNDVPGRTELLGDFHVRMAELMGNEVLAQILGELISRCALITL
MYQTASAAEHSNDEHAEIVKALAAKDEALAVRLMTEHLLHVEQNLAFDRKVPTNDISMALS

Sequences:

>Translated_221_residues
MESSTTHAIVEALTKAIVEHRLHPGTKLAEQKLADHFGVSRTLVRQALFQLSQNRLIRLEPARGAFVAAPSVPEARQVFA
VRRMLEAEMTRAFVRDVTPAKIKALKDHVNQEKSAVERNDVPGRTELLGDFHVRMAELMGNEVLAQILGELISRCALITL
MYQTASAAEHSNDEHAEIVKALAAKDEALAVRLMTEHLLHVEQNLAFDRKVPTNDISMALS
>Mature_221_residues
MESSTTHAIVEALTKAIVEHRLHPGTKLAEQKLADHFGVSRTLVRQALFQLSQNRLIRLEPARGAFVAAPSVPEARQVFA
VRRMLEAEMTRAFVRDVTPAKIKALKDHVNQEKSAVERNDVPGRTELLGDFHVRMAELMGNEVLAQILGELISRCALITL
MYQTASAAEHSNDEHAEIVKALAAKDEALAVRLMTEHLLHVEQNLAFDRKVPTNDISMALS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=201, Percent_Identity=26.3681592039801, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24541; Mature: 24541

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESSTTHAIVEALTKAIVEHRLHPGTKLAEQKLADHFGVSRTLVRQALFQLSQNRLIRLE
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEE
PARGAFVAAPSVPEARQVFAVRRMLEAEMTRAFVRDVTPAKIKALKDHVNQEKSAVERND
CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
VPGRTELLGDFHVRMAELMGNEVLAQILGELISRCALITLMYQTASAAEHSNDEHAEIVK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ALAAKDEALAVRLMTEHLLHVEQNLAFDRKVPTNDISMALS
HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MESSTTHAIVEALTKAIVEHRLHPGTKLAEQKLADHFGVSRTLVRQALFQLSQNRLIRLE
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEE
PARGAFVAAPSVPEARQVFAVRRMLEAEMTRAFVRDVTPAKIKALKDHVNQEKSAVERND
CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
VPGRTELLGDFHVRMAELMGNEVLAQILGELISRCALITLMYQTASAAEHSNDEHAEIVK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ALAAKDEALAVRLMTEHLLHVEQNLAFDRKVPTNDISMALS
HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]