Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91787266

Identifier: 91787266

GI number: 91787266

Start: 1411329

End: 1412057

Strand: Reverse

Name: 91787266

Synonym: Bpro_1371

Alternate gene names: NA

Gene position: 1412057-1411329 (Counterclockwise)

Preceding gene: 91787267

Following gene: 91787265

Centisome position: 27.15

GC content: 65.84

Gene sequence:

>729_bases
ATGCCACACGCCGTTTCACACCAGAAAGATTTTGAGGCGGCGCACCAGCTGCGCAGCGACCTCGCCCTGGCCTTGCGCGC
CGCCGCGCGGCATGGGCTGGCCGAAGGTGTCTGCAACCACTTCAGCGTGGAGTTGCCGGACGGCTCGGGCCGCTTTCTGC
TGAACCCGCGTGGCCTGCTCTGGAGCGAGATCGGCGCGGACGACATCGTGATGATTGACGTGCAAGGCAACAAGCTGGCG
GGCCATCGTGAGGTGGAGCCCACGGCCATGTTTATCCACGGTGCGATTCATGGCCATGCCCGCAAGGCCTGCGTGCTGCA
CACTCACATGCCTTACGCCACGGCCCTGACGCTCACGGCCGACCGCGGACTGGACACCACGCTGTCGCAAAACGCGATGC
GCTTTCACGGCCGGGTGGCCATTGACGCGGACTACAACGGCCTGGCGCTGGACGCCACCGAGGGCCTGCGCATTGCCAAG
GCGATGCAGGGGGCGGACGTGGTGTTTCTGGGCAACCATGGCGTGGTGGTTTGCGGCGCGCGCATGGACCATGCGTATGA
CGACCTCTACTACCTGGAGCGGGCCTGCATGGTGCAGGTGCTGGCACAGTCCACCGGCCGGCCCCTCGTGCCGGTCGATG
CGGCGATTGTCGAGCGCGTGGCCGGGGAAACCATGGGTGAGCGTTTGCAATCGGAGCTTTTCTTTGACGCGCTGCGCCGC
ACGCTTTGA

Upstream 100 bases:

>100_bases
GCGACGAGCTGCCGCCGCATTTCTGACGCCCTGCCCCGGTGGCCTTGCGCAGCGCTATAAAGAGGGGCCCTGCGTTTGAT
TTTTGAGAAAGGCCCCCTTC

Downstream 100 bases:

>100_bases
TTGAACCCAGGGCGTTTTCCGTTTTCGGGGTTTTGGTTGTATTGGGTTTTGGCGTTTGTTGTACTGGCGTGCGCTCAAAG
CGAGCGGGTAGGCGATCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MPHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLLWSEIGADDIVMIDVQGNKLA
GHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTADRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAK
AMQGADVVFLGNHGVVVCGARMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR
TL

Sequences:

>Translated_242_residues
MPHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLLWSEIGADDIVMIDVQGNKLA
GHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTADRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAK
AMQGADVVFLGNHGVVVCGARMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR
TL
>Mature_241_residues
PHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLLWSEIGADDIVMIDVQGNKLAG
HREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTADRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAKA
MQGADVVFLGNHGVVVCGARMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRRT
L

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family [H]

Homologues:

Organism=Homo sapiens, GI29826321, Length=245, Percent_Identity=31.4285714285714, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI29826319, Length=245, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI29826325, Length=245, Percent_Identity=31.4285714285714, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI29826323, Length=245, Percent_Identity=31.4285714285714, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI9257190, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI89276787, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI297307160, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533216, Length=187, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115533218, Length=187, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71989544, Length=219, Percent_Identity=31.5068493150685, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71989550, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71989541, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71989560, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71989555, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: NA

Molecular weight: Translated: 26311; Mature: 26180

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCCEEEECCCCCC
WSEIGADDIVMIDVQGNKLAGHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTA
HHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCEEEEEECCCCEEEEEEEE
DRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAKAMQGADVVFLGNHGVVVCGA
CCCCCCHHHHCHHEECCEEEEECCCCCEEEECCCCHHHHHHHCCCCEEEECCCCEEEEEC
RMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TL
CC
>Mature Secondary Structure 
PHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCCEEEECCCCCC
WSEIGADDIVMIDVQGNKLAGHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTA
HHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCEEEEEECCCCEEEEEEEE
DRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAKAMQGADVVFLGNHGVVVCGA
CCCCCCHHHHCHHEECCEEEEECCCCCEEEECCCCHHHHHHHCCCCEEEECCCCEEEEEC
RMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]