| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787266
Identifier: 91787266
GI number: 91787266
Start: 1411329
End: 1412057
Strand: Reverse
Name: 91787266
Synonym: Bpro_1371
Alternate gene names: NA
Gene position: 1412057-1411329 (Counterclockwise)
Preceding gene: 91787267
Following gene: 91787265
Centisome position: 27.15
GC content: 65.84
Gene sequence:
>729_bases ATGCCACACGCCGTTTCACACCAGAAAGATTTTGAGGCGGCGCACCAGCTGCGCAGCGACCTCGCCCTGGCCTTGCGCGC CGCCGCGCGGCATGGGCTGGCCGAAGGTGTCTGCAACCACTTCAGCGTGGAGTTGCCGGACGGCTCGGGCCGCTTTCTGC TGAACCCGCGTGGCCTGCTCTGGAGCGAGATCGGCGCGGACGACATCGTGATGATTGACGTGCAAGGCAACAAGCTGGCG GGCCATCGTGAGGTGGAGCCCACGGCCATGTTTATCCACGGTGCGATTCATGGCCATGCCCGCAAGGCCTGCGTGCTGCA CACTCACATGCCTTACGCCACGGCCCTGACGCTCACGGCCGACCGCGGACTGGACACCACGCTGTCGCAAAACGCGATGC GCTTTCACGGCCGGGTGGCCATTGACGCGGACTACAACGGCCTGGCGCTGGACGCCACCGAGGGCCTGCGCATTGCCAAG GCGATGCAGGGGGCGGACGTGGTGTTTCTGGGCAACCATGGCGTGGTGGTTTGCGGCGCGCGCATGGACCATGCGTATGA CGACCTCTACTACCTGGAGCGGGCCTGCATGGTGCAGGTGCTGGCACAGTCCACCGGCCGGCCCCTCGTGCCGGTCGATG CGGCGATTGTCGAGCGCGTGGCCGGGGAAACCATGGGTGAGCGTTTGCAATCGGAGCTTTTCTTTGACGCGCTGCGCCGC ACGCTTTGA
Upstream 100 bases:
>100_bases GCGACGAGCTGCCGCCGCATTTCTGACGCCCTGCCCCGGTGGCCTTGCGCAGCGCTATAAAGAGGGGCCCTGCGTTTGAT TTTTGAGAAAGGCCCCCTTC
Downstream 100 bases:
>100_bases TTGAACCCAGGGCGTTTTCCGTTTTCGGGGTTTTGGTTGTATTGGGTTTTGGCGTTTGTTGTACTGGCGTGCGCTCAAAG CGAGCGGGTAGGCGATCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MPHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLLWSEIGADDIVMIDVQGNKLA GHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTADRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAK AMQGADVVFLGNHGVVVCGARMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR TL
Sequences:
>Translated_242_residues MPHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLLWSEIGADDIVMIDVQGNKLA GHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTADRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAK AMQGADVVFLGNHGVVVCGARMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR TL >Mature_241_residues PHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLLWSEIGADDIVMIDVQGNKLAG HREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTADRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAKA MQGADVVFLGNHGVVVCGARMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRRT L
Specific function: Unknown
COG id: COG0235
COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldolase class II family [H]
Homologues:
Organism=Homo sapiens, GI29826321, Length=245, Percent_Identity=31.4285714285714, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI29826319, Length=245, Percent_Identity=31.4285714285714, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI29826325, Length=245, Percent_Identity=31.4285714285714, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI29826323, Length=245, Percent_Identity=31.4285714285714, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI9257190, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI89276787, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI297307160, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533216, Length=187, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI115533218, Length=187, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71989544, Length=219, Percent_Identity=31.5068493150685, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71989550, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71989541, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71989560, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71989555, Length=219, Percent_Identity=31.5068493150685, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001303 [H]
Pfam domain/function: PF00596 Aldolase_II [H]
EC number: NA
Molecular weight: Translated: 26311; Mature: 26180
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCCEEEECCCCCC WSEIGADDIVMIDVQGNKLAGHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTA HHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCEEEEEECCCCEEEEEEEE DRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAKAMQGADVVFLGNHGVVVCGA CCCCCCHHHHCHHEECCEEEEECCCCCEEEECCCCHHHHHHHCCCCEEEECCCCEEEEEC RMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TL CC >Mature Secondary Structure PHAVSHQKDFEAAHQLRSDLALALRAAARHGLAEGVCNHFSVELPDGSGRFLLNPRGLL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCCEEEECCCCCC WSEIGADDIVMIDVQGNKLAGHREVEPTAMFIHGAIHGHARKACVLHTHMPYATALTLTA HHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCEEEEEECCCCEEEEEEEE DRGLDTTLSQNAMRFHGRVAIDADYNGLALDATEGLRIAKAMQGADVVFLGNHGVVVCGA CCCCCCHHHHCHHEECCEEEEECCCCCEEEECCCCHHHHHHHCCCCEEEECCCCEEEEEC RMDHAYDDLYYLERACMVQVLAQSTGRPLVPVDAAIVERVAGETMGERLQSELFFDALRR CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]