| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787192
Identifier: 91787192
GI number: 91787192
Start: 1337854
End: 1339638
Strand: Reverse
Name: 91787192
Synonym: Bpro_1296
Alternate gene names: NA
Gene position: 1339638-1337854 (Counterclockwise)
Preceding gene: 91787196
Following gene: 91787191
Centisome position: 25.76
GC content: 64.82
Gene sequence:
>1785_bases ATGAAGAAAAGACTTAGCCGTGCCCTCGGCTGCCTCTGCCTCGCCGCCCCCATGGTGCTGGCGCAGACCCAAGCGCCCGC CCCCGCCGCACCCGCTGCACCTTCCGGGCTCGCCGAAGCCAAAGCCGCGCAGGACGCAGCGCCGCCCGCCTCGCCGCTCG ATAGCGCACTGTTTTACCAGCTGCTTGTGGGTGAAATCACCACGCAGGATGGAGAGCCCGCCGCGGGTTTCGCGCTGATG CTGGACGCAGCCCGCAAAACGGGCGAGGCCCAGCTTTACCAGCGAGCCACCGATATTGCCCTGCAGTCGCGCTCCGGCGA CGCCGCGCTGCAGGCGGCACAGGCCTGGAAGCAGGCCCAGCCTGCCTCGCGCGAGGCCAACCGCTATGTGCTGCAAATCC TGATCGCACTGAACCGCATTCCCGAAACGGCAGACCTGCTGAAAACCGAGATCGCCCTGGCACCGGAGGCCGAGCGCAAT GCGGTCCTGGCCGCAGTGCCGCGCGCCTACGCCCGTGTCAGTGACAAAAAATTGTCCAGCACCGTTGTGCAGGAGGGCCT GGACACCTACCTGAACAATCCCGCCACCGCCGGCGCCGCCTGGGCCACCGTAGGACGCATGCGGCTGGCCGCAGACGACA GCAATGGCGCACTCGACGCGGCCAAACGCGGCCAGGCCGCCGACGCTCACGCGGAAGGCCCGGCCATGCTGGCGCTGGAG CTGATGGACCCCAAACTGCCCGAAGCAGAAGGCCTGGTCAGGAAATACCTTGAAGGCAACGCCAAGGCCCAGCCCGAATT CCGCATGGCTTACGCACGGGCCCTGCTGGATGCACAGCGCTATGCAGAAGCGGCCACGCAGTTGCAGGCGGTGACCCGTG AAAAACCCGACTACCCGGAAAGCTGGCTGGTGCTGGGCTCTTTGCAACTGCAGGACAACCAGCTCGCGCAGGCGCAGGCC TCGCTGCAACGCTATGTCACGCTGGCGGAGCAGCAGGCTGCGGATACCGACCGTAACCGCGGACTGGCCCAAGCCTACCT CTCGCTGTCGCAAGTGGCTGAAAAGCGCAAGGACTATGCAGCAGCGGAAAACTGGCTGAACAAAATCGAGGATGCGTCCG AACTGACGGCGGCGCAAACCCGCCGCGCCTCCATCCTGGCGAGCCAGGGCAAGCTCGAAGAAGGCCGGAAGCTCATCCGC CAGCTGCCCGAACGCAGCCCTGGTGATGCGCGGCTGAAGCTCAACGCCGAAGTCGGACTGCTTCGCGATCTGAAGCAATA CCGGCTTGCCCATGATGTGCTGGCCGAGGCCCTGAGCAAGACGCCCGATGAACCGGAACTGCTGTACGACCAGGCCATGA TGGCCGAAAAACTCGCATCGCTCGGCGAGATGGAGCGCCTGCTGCGCCAGGTCATCCAGCTCAAGCCCGACTATCACCAC GCGTACAACGCGCTCGGTTATTCGCTGGCAGACCGCGGTGTTCGCCTGCCGGAAGCCCGTGACCTGATCCAGAAAGCGCT CGGCTTCGCGCCGACCGACCCCTTTATCAAGGACAGCCTGGGCTGGGTTGAATACCGCATGGGCAACAAGACGGAAGCAC TCCGCATTTTTGAGGCCGCCTACAAGGCCAAACCCGACGCGGAAATTGCCGCGCACTACGGGGAGGTCTTGTGGAGTCTG GGCCAGCGCGAACGGGCGACGGCGATCTGGAAGGAAGGCTTGCTGTTGAACCCCGACAACGAGACCTTGCAGGAAACCCT CAAGCGCCTGCGTGTCAAGCTGTAA
Upstream 100 bases:
>100_bases GCATGGCTCACAGTCAGACGGCAAAAAACATCAACCCGCGACACAGACCCTGAGGACAAGAGGGAAAACGCATCCGCGGA GCTTCAATTATCATGGGTTG
Downstream 100 bases:
>100_bases TCCGGACCCCGCCCCTTGTTGCTCCTTGCCCGCCTGCGCTCAGCTTTTTTTTCAGGCTGCCTGATTGCTGCTTTTCTAAT CGCAGGATGCGCCAATCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 594; Mature: 594
Protein sequence:
>594_residues MKKRLSRALGCLCLAAPMVLAQTQAPAPAAPAAPSGLAEAKAAQDAAPPASPLDSALFYQLLVGEITTQDGEPAAGFALM LDAARKTGEAQLYQRATDIALQSRSGDAALQAAQAWKQAQPASREANRYVLQILIALNRIPETADLLKTEIALAPEAERN AVLAAVPRAYARVSDKKLSSTVVQEGLDTYLNNPATAGAAWATVGRMRLAADDSNGALDAAKRGQAADAHAEGPAMLALE LMDPKLPEAEGLVRKYLEGNAKAQPEFRMAYARALLDAQRYAEAATQLQAVTREKPDYPESWLVLGSLQLQDNQLAQAQA SLQRYVTLAEQQAADTDRNRGLAQAYLSLSQVAEKRKDYAAAENWLNKIEDASELTAAQTRRASILASQGKLEEGRKLIR QLPERSPGDARLKLNAEVGLLRDLKQYRLAHDVLAEALSKTPDEPELLYDQAMMAEKLASLGEMERLLRQVIQLKPDYHH AYNALGYSLADRGVRLPEARDLIQKALGFAPTDPFIKDSLGWVEYRMGNKTEALRIFEAAYKAKPDAEIAAHYGEVLWSL GQRERATAIWKEGLLLNPDNETLQETLKRLRVKL
Sequences:
>Translated_594_residues MKKRLSRALGCLCLAAPMVLAQTQAPAPAAPAAPSGLAEAKAAQDAAPPASPLDSALFYQLLVGEITTQDGEPAAGFALM LDAARKTGEAQLYQRATDIALQSRSGDAALQAAQAWKQAQPASREANRYVLQILIALNRIPETADLLKTEIALAPEAERN AVLAAVPRAYARVSDKKLSSTVVQEGLDTYLNNPATAGAAWATVGRMRLAADDSNGALDAAKRGQAADAHAEGPAMLALE LMDPKLPEAEGLVRKYLEGNAKAQPEFRMAYARALLDAQRYAEAATQLQAVTREKPDYPESWLVLGSLQLQDNQLAQAQA SLQRYVTLAEQQAADTDRNRGLAQAYLSLSQVAEKRKDYAAAENWLNKIEDASELTAAQTRRASILASQGKLEEGRKLIR QLPERSPGDARLKLNAEVGLLRDLKQYRLAHDVLAEALSKTPDEPELLYDQAMMAEKLASLGEMERLLRQVIQLKPDYHH AYNALGYSLADRGVRLPEARDLIQKALGFAPTDPFIKDSLGWVEYRMGNKTEALRIFEAAYKAKPDAEIAAHYGEVLWSL GQRERATAIWKEGLLLNPDNETLQETLKRLRVKL >Mature_594_residues MKKRLSRALGCLCLAAPMVLAQTQAPAPAAPAAPSGLAEAKAAQDAAPPASPLDSALFYQLLVGEITTQDGEPAAGFALM LDAARKTGEAQLYQRATDIALQSRSGDAALQAAQAWKQAQPASREANRYVLQILIALNRIPETADLLKTEIALAPEAERN AVLAAVPRAYARVSDKKLSSTVVQEGLDTYLNNPATAGAAWATVGRMRLAADDSNGALDAAKRGQAADAHAEGPAMLALE LMDPKLPEAEGLVRKYLEGNAKAQPEFRMAYARALLDAQRYAEAATQLQAVTREKPDYPESWLVLGSLQLQDNQLAQAQA SLQRYVTLAEQQAADTDRNRGLAQAYLSLSQVAEKRKDYAAAENWLNKIEDASELTAAQTRRASILASQGKLEEGRKLIR QLPERSPGDARLKLNAEVGLLRDLKQYRLAHDVLAEALSKTPDEPELLYDQAMMAEKLASLGEMERLLRQVIQLKPDYHH AYNALGYSLADRGVRLPEARDLIQKALGFAPTDPFIKDSLGWVEYRMGNKTEALRIFEAAYKAKPDAEIAAHYGEVLWSL GQRERATAIWKEGLLLNPDNETLQETLKRLRVKL
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011717 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR013105 - InterPro: IPR019734 [H]
Pfam domain/function: PF07719 TPR_2; PF07721 TPR_4 [H]
EC number: NA
Molecular weight: Translated: 64827; Mature: 64827
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKRLSRALGCLCLAAPMVLAQTQAPAPAAPAAPSGLAEAKAAQDAAPPASPLDSALFYQ CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH LLVGEITTQDGEPAAGFALMLDAARKTGEAQLYQRATDIALQSRSGDAALQAAQAWKQAQ HHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC PASREANRYVLQILIALNRIPETADLLKTEIALAPEAERNAVLAAVPRAYARVSDKKLSS CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH TVVQEGLDTYLNNPATAGAAWATVGRMRLAADDSNGALDAAKRGQAADAHAEGPAMLALE HHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEEE LMDPKLPEAEGLVRKYLEGNAKAQPEFRMAYARALLDAQRYAEAATQLQAVTREKPDYPE CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SWLVLGSLQLQDNQLAQAQASLQRYVTLAEQQAADTDRNRGLAQAYLSLSQVAEKRKDYA CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHH AAENWLNKIEDASELTAAQTRRASILASQGKLEEGRKLIRQLPERSPGDARLKLNAEVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHH LRDLKQYRLAHDVLAEALSKTPDEPELLYDQAMMAEKLASLGEMERLLRQVIQLKPDYHH HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AYNALGYSLADRGVRLPEARDLIQKALGFAPTDPFIKDSLGWVEYRMGNKTEALRIFEAA HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCHHHEECCCCHHHHHHHHHH YKAKPDAEIAAHYGEVLWSLGQRERATAIWKEGLLLNPDNETLQETLKRLRVKL HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKKRLSRALGCLCLAAPMVLAQTQAPAPAAPAAPSGLAEAKAAQDAAPPASPLDSALFYQ CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH LLVGEITTQDGEPAAGFALMLDAARKTGEAQLYQRATDIALQSRSGDAALQAAQAWKQAQ HHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC PASREANRYVLQILIALNRIPETADLLKTEIALAPEAERNAVLAAVPRAYARVSDKKLSS CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH TVVQEGLDTYLNNPATAGAAWATVGRMRLAADDSNGALDAAKRGQAADAHAEGPAMLALE HHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEEE LMDPKLPEAEGLVRKYLEGNAKAQPEFRMAYARALLDAQRYAEAATQLQAVTREKPDYPE CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SWLVLGSLQLQDNQLAQAQASLQRYVTLAEQQAADTDRNRGLAQAYLSLSQVAEKRKDYA CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHH AAENWLNKIEDASELTAAQTRRASILASQGKLEEGRKLIRQLPERSPGDARLKLNAEVGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHH LRDLKQYRLAHDVLAEALSKTPDEPELLYDQAMMAEKLASLGEMERLLRQVIQLKPDYHH HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AYNALGYSLADRGVRLPEARDLIQKALGFAPTDPFIKDSLGWVEYRMGNKTEALRIFEAA HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCHHHEECCCCHHHHHHHHHH YKAKPDAEIAAHYGEVLWSLGQRERATAIWKEGLLLNPDNETLQETLKRLRVKL HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7883699; 10984043 [H]