| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yfhK [H]
Identifier: 91787017
GI number: 91787017
Start: 1155747
End: 1157168
Strand: Reverse
Name: yfhK [H]
Synonym: Bpro_1119
Alternate gene names: 91787017
Gene position: 1157168-1155747 (Counterclockwise)
Preceding gene: 91787018
Following gene: 91787016
Centisome position: 22.25
GC content: 65.61
Gene sequence:
>1422_bases ATGCTGCAGCGATTTTCGTTTCGGCAACTGCTTGTCATCGCGTTCCTGCTGATCGCCGCCTTGCTGGGCGCCGCGTCGCT GCGCGCGCTGTTTACCCTGGAAGATCTCACGCAGCAAAGCCGTGACAGCGCAGCCCGCGCGCTCGAACTGGGCAGCGCGG CCCAGTCGCTGGGCGAGCGCAGCGTCTCGATGGAACGCACCTCCAGGCAATCGGTGGTACTGGACGATCGGGTGCTCCGC GAGCGCTTCGATGACGAGGTCCGCGAGTCGACAGCTGTGCTGGACAGCCTGGTGAGAAATGGCATTCCGGCGGTCAAGGC ACGGCAGTGGCGCGCCCACCTGCAGACCATCGCCAGCCTGATGTCTGGACCGCCGGCAACCGCGCTGGACCGCGAGCGCC AGCTGGCGCAGGAGTTTCGCGAGCTGGAGGGGGTCAATGCAACGATCGCGATGCAGGTGCAGCAGGCCATACAGCAGCGC AACAAATTACTGGAAGGCCGACTGGAAGCCAGCCGCCAACGCCTGGCGCAGCAAGTGGGCTGGGCCATCGCCCTGGCGGT GGTCATGGCGCTGGCTTTTGGCATCTGGTTCACGCTGCCGCTGAAACGCCTGGAGCATGCCATTGTGGGCCTCGGTGAAA ACCGGCTGGACCAGGTGATTGCGATCCAGGGGCCGGCAGACCTGGCCCTGGTGGGTCAGCGGCTGAACTGGCTGCGGCTG CGGCTGGTCGAGCTGGATGCCGACAAGTCCCGCTTTTTACGCCACATCTCGCACGAGCTCAAGACGCCGCTGGCCTCCCT GCGTGAAGGGGTGTCGCTGCTGGAAGACGGCGTCGCCGGTCCCTTGAGCGATGACCAGCGCGAGATTGCCCAAATCCTGA AGCACAACACCGGCGTGCTGCAGGGACAGATCGAGGATTTGCTGCGCTTCAACACGGCAGCGTTCGAAGCGCGCCAGTTG CGCAGGCAGACGTTGGACCTGCTGCAGCTCATGGAGGAGCAGGTCGACGCGCAGCGCCTGCAATGGCGCGCGCGGGAACT GTCGGTGGCCGTCGTGGGTGAGCCGCTCCGGATGGAGCTGGACCCCGAGAAAATCGGGACTGCGCTGGCCAACCTGCTGT CCAACGCCATCCGCTACTCACCGCCCAGGGGCATGATCCGCCTGGAGCTGGTGGCGCTGCCGGGCCGGGTCCGCATCGAT ATTCACGACCAGGGCATCGGCGTCGCTGCGGCCGACCGCGAGCGGATTTTCGAGCCCTTCTTTCGCGGCGAGCGGCAACC CGCCGACGTGGTACGCGGCAGCGGAATTGGCCTGTCCATCGTGCACGAATACATCGCGGCGCACGGCGGGCGCCTCGAAC TGCTGCCAGACCAACCTGGTGCACACTTGCGGATTGAGCTTCCCCATGTTTCCAAATCCTGA
Upstream 100 bases:
>100_bases CATCACACAGGCGACACAGCGCTCGCTGCGCGGCGAAGTCCTGACGCGGGACGTCGCCGTGCAGGCCTGAGGCAACGGGT TGCGCCAATACACCACGCAC
Downstream 100 bases:
>100_bases CTTTTCCACACGCCGCATCCACGCGGGCCTGCTGGCCCTGGCGGCTGCGGCTGCACTGGCGGCCTGCAGTACCGGCCCCT CCCGGCAGGATGTCAGGCAA
Product: periplasmic sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 473
Protein sequence:
>473_residues MLQRFSFRQLLVIAFLLIAALLGAASLRALFTLEDLTQQSRDSAARALELGSAAQSLGERSVSMERTSRQSVVLDDRVLR ERFDDEVRESTAVLDSLVRNGIPAVKARQWRAHLQTIASLMSGPPATALDRERQLAQEFRELEGVNATIAMQVQQAIQQR NKLLEGRLEASRQRLAQQVGWAIALAVVMALAFGIWFTLPLKRLEHAIVGLGENRLDQVIAIQGPADLALVGQRLNWLRL RLVELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGPLSDDQREIAQILKHNTGVLQGQIEDLLRFNTAAFEARQL RRQTLDLLQLMEEQVDAQRLQWRARELSVAVVGEPLRMELDPEKIGTALANLLSNAIRYSPPRGMIRLELVALPGRVRID IHDQGIGVAAADRERIFEPFFRGERQPADVVRGSGIGLSIVHEYIAAHGGRLELLPDQPGAHLRIELPHVSKS
Sequences:
>Translated_473_residues MLQRFSFRQLLVIAFLLIAALLGAASLRALFTLEDLTQQSRDSAARALELGSAAQSLGERSVSMERTSRQSVVLDDRVLR ERFDDEVRESTAVLDSLVRNGIPAVKARQWRAHLQTIASLMSGPPATALDRERQLAQEFRELEGVNATIAMQVQQAIQQR NKLLEGRLEASRQRLAQQVGWAIALAVVMALAFGIWFTLPLKRLEHAIVGLGENRLDQVIAIQGPADLALVGQRLNWLRL RLVELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGPLSDDQREIAQILKHNTGVLQGQIEDLLRFNTAAFEARQL RRQTLDLLQLMEEQVDAQRLQWRARELSVAVVGEPLRMELDPEKIGTALANLLSNAIRYSPPRGMIRLELVALPGRVRID IHDQGIGVAAADRERIFEPFFRGERQPADVVRGSGIGLSIVHEYIAAHGGRLELLPDQPGAHLRIELPHVSKS >Mature_473_residues MLQRFSFRQLLVIAFLLIAALLGAASLRALFTLEDLTQQSRDSAARALELGSAAQSLGERSVSMERTSRQSVVLDDRVLR ERFDDEVRESTAVLDSLVRNGIPAVKARQWRAHLQTIASLMSGPPATALDRERQLAQEFRELEGVNATIAMQVQQAIQQR NKLLEGRLEASRQRLAQQVGWAIALAVVMALAFGIWFTLPLKRLEHAIVGLGENRLDQVIAIQGPADLALVGQRLNWLRL RLVELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGPLSDDQREIAQILKHNTGVLQGQIEDLLRFNTAAFEARQL RRQTLDLLQLMEEQVDAQRLQWRARELSVAVVGEPLRMELDPEKIGTALANLLSNAIRYSPPRGMIRLELVALPGRVRID IHDQGIGVAAADRERIFEPFFRGERQPADVVRGSGIGLSIVHEYIAAHGGRLELLPDQPGAHLRIELPHVSKS
Specific function: Probable member of a two-component regulatory system yfhA/yfhK. May activate yfhA by phosphorylation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI87082128, Length=430, Percent_Identity=34.4186046511628, Blast_Score=189, Evalue=3e-49, Organism=Escherichia coli, GI1789808, Length=294, Percent_Identity=26.8707482993197, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790346, Length=286, Percent_Identity=28.6713286713287, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1788393, Length=272, Percent_Identity=26.8382352941176, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1790861, Length=296, Percent_Identity=27.7027027027027, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786783, Length=297, Percent_Identity=25.2525252525253, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1787894, Length=275, Percent_Identity=26.9090909090909, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1786912, Length=228, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI145693157, Length=226, Percent_Identity=26.5486725663717, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786600, Length=213, Percent_Identity=24.4131455399061, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790436, Length=216, Percent_Identity=24.0740740740741, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87081816, Length=219, Percent_Identity=28.7671232876712, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1788713, Length=259, Percent_Identity=25.4826254826255, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 52712; Mature: 52712
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQRFSFRQLLVIAFLLIAALLGAASLRALFTLEDLTQQSRDSAARALELGSAAQSLGER CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVSMERTSRQSVVLDDRVLRERFDDEVRESTAVLDSLVRNGIPAVKARQWRAHLQTIASL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH MSGPPATALDRERQLAQEFRELEGVNATIAMQVQQAIQQRNKLLEGRLEASRQRLAQQVG HCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAIALAVVMALAFGIWFTLPLKRLEHAIVGLGENRLDQVIAIQGPADLALVGQRLNWLRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHHHHH RLVELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGPLSDDQREIAQILKHNTGVL HHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH QGQIEDLLRFNTAAFEARQLRRQTLDLLQLMEEQVDAQRLQWRARELSVAVVGEPLRMEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECC DPEKIGTALANLLSNAIRYSPPRGMIRLELVALPGRVRIDIHDQGIGVAAADRERIFEPF CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCCEEECCHHHHHHHH FRGERQPADVVRGSGIGLSIVHEYIAAHGGRLELLPDQPGAHLRIELPHVSKS HCCCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCC >Mature Secondary Structure MLQRFSFRQLLVIAFLLIAALLGAASLRALFTLEDLTQQSRDSAARALELGSAAQSLGER CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVSMERTSRQSVVLDDRVLRERFDDEVRESTAVLDSLVRNGIPAVKARQWRAHLQTIASL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH MSGPPATALDRERQLAQEFRELEGVNATIAMQVQQAIQQRNKLLEGRLEASRQRLAQQVG HCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAIALAVVMALAFGIWFTLPLKRLEHAIVGLGENRLDQVIAIQGPADLALVGQRLNWLRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHHHHH RLVELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGPLSDDQREIAQILKHNTGVL HHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH QGQIEDLLRFNTAAFEARQLRRQTLDLLQLMEEQVDAQRLQWRARELSVAVVGEPLRMEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECC DPEKIGTALANLLSNAIRYSPPRGMIRLELVALPGRVRIDIHDQGIGVAAADRERIFEPF CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCCEEECCHHHHHHHH FRGERQPADVVRGSGIGLSIVHEYIAAHGGRLELLPDQPGAHLRIELPHVSKS HCCCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]