| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91786551
Identifier: 91786551
GI number: 91786551
Start: 655612
End: 656562
Strand: Direct
Name: 91786551
Synonym: Bpro_0646
Alternate gene names: NA
Gene position: 655612-656562 (Clockwise)
Preceding gene: 91786550
Following gene: 91786553
Centisome position: 12.61
GC content: 67.61
Gene sequence:
>951_bases ATGAGCGTATCCGCGTTTCACGAGGGCGAGCGTGCGGTGCAGGCCCGGGTGGGCGTGCAGGAGCGGATGGCGCAGCTCGG CCCGCGCGTCATCCGGGACTTCATGCCCGATCAGCACCGCGAGTTTTTTGGGCAGCTGCCTTTTGTGATTGCCGGCACGG CGGACGCGTCCGGCCAGCCTTGGGCCTCGGTGCTCGCGGCACCACCCGGTTTCATTCACTCGCCCCATCCGCAGCGGCTG GTGCTGCAGGCGCAGCCCCTGCCGGGCGATCCGCTGCAGGACACTTTGGCGGAAGGCGCGGCCATCGGCCTGCTGGGCAT GGAGCCGCACACGCGGCGGCGCAACCGCATGAATGGGGTGGTGCAGGGCCTGGGTGCTGCGGGTTTTTCGGTGCAGGTGA GCCAGAGCTTTGGCAACTGCCCCAAGTACATCCAGGCCCGTGAGCCGGTGTATGACGCGGGCCTTGCGCCTGTACCGCCC GTGGTGCACCAGGCGGGCCAGCTCGACGATGCGGCGCGCGCCATGATCGCGGCGGCCGATACCCTCTTCATCGCGACGGC CTATATGGGTGACGGTGACGACGCGGGGCGGGCCGGCGGGGTGGATGTGTCGCACCGCGGTGGCAAACCCGGCTTTGTGC GGGTGGGCGCCGACGGCACGCTCACGGTGCCGGATTTCATGGGCAACTTTTTTTTCAACACGCTGGGCAATATTGCGGTC AATCCGCGGGCCGGCCTGCTGTTCATCGACTTTGACAATGGCGACCTGCTCTATCTGGCCGTTACGGCAGACATCATCTG GGACGGCCCTGAGGTGCAGGCCTTTGCCGAGGCGCAGCGCCTGCTGCGGTTCAAGGTGGGATCGATGCGCTTGGTGAAGG GCTCATTGCCCCTGCGCTGGGGCGAGGCGGAGCTGTCGCCGGTGCTTGAGACCACGGGCACCTGGGCCTGA
Upstream 100 bases:
>100_bases TTTCGCTGGAACCTTACCCCAGGCTGCGCGCCTGGCTGGCCCGCATCGAAGCCCTGCCGCGCTTTGTCCCCATGGTCAAA ACGCCCACCGGGCTGGCAGC
Downstream 100 bases:
>100_bases TCTGTAGCGTTGACACGAGCTCAGCCGATGGCTTCCAGCGCGAGCTCTCGCTCCAGCCATGCGCGAAATTTCTGCACAGC CGGCCGATCCGCGCTGTGGG
Product: pyridoxamine 5'-phosphate oxidase-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MSVSAFHEGERAVQARVGVQERMAQLGPRVIRDFMPDQHREFFGQLPFVIAGTADASGQPWASVLAAPPGFIHSPHPQRL VLQAQPLPGDPLQDTLAEGAAIGLLGMEPHTRRRNRMNGVVQGLGAAGFSVQVSQSFGNCPKYIQAREPVYDAGLAPVPP VVHQAGQLDDAARAMIAAADTLFIATAYMGDGDDAGRAGGVDVSHRGGKPGFVRVGADGTLTVPDFMGNFFFNTLGNIAV NPRAGLLFIDFDNGDLLYLAVTADIIWDGPEVQAFAEAQRLLRFKVGSMRLVKGSLPLRWGEAELSPVLETTGTWA
Sequences:
>Translated_316_residues MSVSAFHEGERAVQARVGVQERMAQLGPRVIRDFMPDQHREFFGQLPFVIAGTADASGQPWASVLAAPPGFIHSPHPQRL VLQAQPLPGDPLQDTLAEGAAIGLLGMEPHTRRRNRMNGVVQGLGAAGFSVQVSQSFGNCPKYIQAREPVYDAGLAPVPP VVHQAGQLDDAARAMIAAADTLFIATAYMGDGDDAGRAGGVDVSHRGGKPGFVRVGADGTLTVPDFMGNFFFNTLGNIAV NPRAGLLFIDFDNGDLLYLAVTADIIWDGPEVQAFAEAQRLLRFKVGSMRLVKGSLPLRWGEAELSPVLETTGTWA >Mature_315_residues SVSAFHEGERAVQARVGVQERMAQLGPRVIRDFMPDQHREFFGQLPFVIAGTADASGQPWASVLAAPPGFIHSPHPQRLV LQAQPLPGDPLQDTLAEGAAIGLLGMEPHTRRRNRMNGVVQGLGAAGFSVQVSQSFGNCPKYIQAREPVYDAGLAPVPPV VHQAGQLDDAARAMIAAADTLFIATAYMGDGDDAGRAGGVDVSHRGGKPGFVRVGADGTLTVPDFMGNFFFNTLGNIAVN PRAGLLFIDFDNGDLLYLAVTADIIWDGPEVQAFAEAQRLLRFKVGSMRLVKGSLPLRWGEAELSPVLETTGTWA
Specific function: Unknown
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33708; Mature: 33577
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS00962 RIBOSOMAL_S2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSAFHEGERAVQARVGVQERMAQLGPRVIRDFMPDQHREFFGQLPFVIAGTADASGQP CCCCCHHCHHHHHHHHHCHHHHHHHHCHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCC WASVLAAPPGFIHSPHPQRLVLQAQPLPGDPLQDTLAEGAAIGLLGMEPHTRRRNRMNGV HHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHH VQGLGAAGFSVQVSQSFGNCPKYIQAREPVYDAGLAPVPPVVHQAGQLDDAARAMIAAAD HHHCCCCCCEEEECCCCCCCHHHHHCCCCHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHH TLFIATAYMGDGDDAGRAGGVDVSHRGGKPGFVRVGADGTLTVPDFMGNFFFNTLGNIAV HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECHHHHHHHHHHHHCCEEE NPRAGLLFIDFDNGDLLYLAVTADIIWDGPEVQAFAEAQRLLRFKVGSMRLVKGSLPLRW CCCCCEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEE GEAELSPVLETTGTWA CCHHHHHHHHCCCCCC >Mature Secondary Structure SVSAFHEGERAVQARVGVQERMAQLGPRVIRDFMPDQHREFFGQLPFVIAGTADASGQP CCCCHHCHHHHHHHHHCHHHHHHHHCHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCC WASVLAAPPGFIHSPHPQRLVLQAQPLPGDPLQDTLAEGAAIGLLGMEPHTRRRNRMNGV HHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHH VQGLGAAGFSVQVSQSFGNCPKYIQAREPVYDAGLAPVPPVVHQAGQLDDAARAMIAAAD HHHCCCCCCEEEECCCCCCCHHHHHCCCCHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHH TLFIATAYMGDGDDAGRAGGVDVSHRGGKPGFVRVGADGTLTVPDFMGNFFFNTLGNIAV HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECHHHHHHHHHHHHCCEEE NPRAGLLFIDFDNGDLLYLAVTADIIWDGPEVQAFAEAQRLLRFKVGSMRLVKGSLPLRW CCCCCEEEEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEE GEAELSPVLETTGTWA CCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA