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The map label for this gene is ydiD [C]

Identifier: 91786510

GI number: 91786510

Start: 610744

End: 612690

Strand: Reverse

Name: ydiD [C]

Synonym: Bpro_0604

Alternate gene names: 91786510

Gene position: 612690-610744 (Counterclockwise)

Preceding gene: 91786514

Following gene: 91786509

Centisome position: 11.78

GC content: 63.17

Gene sequence:

>1947_bases
ATGCAGACCACGTTCCCACGATTGCTGCTCAAACATGCTGCCGAGCGTCCGGGCGCCGCGGCCATGCGCGAGAAAGAATA
TGGCATCTGGCAGGCGCACAGCTGGGCCGGCATGGCCGAGCTGGTGGAACACATTGCTTGCGGCCTGCACGAGGCCGGCC
TGGGGCGTGGCGAACACATGGCGCTGATCGGTGCCAACCGGCCGCGCCTGTATGCCACCATGCTGGCCGCGCAGTCGCTG
GGGGCGATTCCCATTCCGCTGTACCAGGATGCCGTGGGCGCCGAATGCGTCTTCCCCATCACCAATGCCGACGTACGCTT
CGCCATGGTGGAAGACCAGGAGCAGGTCGACAAGCTGCTGGAAATCCGTGACCGCTGCCCGGACCTGGCCCACATCATTT
TTGACGACCCGCGCGGCCTGCGCAATTACGAAGAGCCCGGACTCACATCCCTGGACCGGCTGATTGAGTCCGGCCAGGCG
CTGGCGGTGAGCCAGCCTGGCTGGTTCCGCATGGAAGTCGACAAGGCCTCCCCCGACGACGTGGCGGCGATGTTCTTTAC
CTCGGGCACCACCGGCAATCCCAAGGGCGTGGTGCACACGCACGCGACCTTGCTGGACCGTGCGCAGGCCGGCGCAGAAT
TTGACAAGCTCACGAGCGCCGAAGAAGTGCTGGCCTACCTGCCGCCGGCGTGGATTGGCCAGAACATCTTCAGCTACGCG
CAGTGGCTGGCCTGCGGCTATGTGGTGAACTGCCCCGAGAGTGCCAGCACGGTGATGATTGACCTCAAGGAGGTCGGACC
GACCTATTACTTTGCGCCACCGCGGGTGTTTGAAGGCATGCTCACCACGGTCATGATCCGCATGGAGGACGCCGGGCGCC
TCAAGCGCGGCATGTTCAATTACTTCATGGGGGTGGCTCGCCAAGTGGGTCCCGCCCTCATGGACGGCAAGCCGGTCAAT
TTCATCCAGACCCTGCTTTATGGCCTGGGCAACCTGATGGTCTACGGGCCCCTGCGCAACAACCTGGGCTTTTCGCGCGT
GCGGGTGGCCTACACCGCCGGCGAAGCCATTGGCCCGGACCTCTTCACTTTTTACCGTTCCATCGGCATCAACCTCAAGC
AGCTGTATGGCTCCACGGAAACCGCCGTGTTCGTCTGCCTGCAGCCCGACAACGAGGCGCGGGCCGACACGGTCGGCGTG
CCGATTCAAGGCGTGCAGATCCGGGTGGCCGACAACGGCGAGGTCCTGGTCAAGTCGGCCGGCCTGCTCAAGGAGTACTA
CAAAAATCCGGCGGCCACGGCCGAGGTGCTGACCGCCGACGGCTGGTACCACACCAGCGACGCCGGGTTTCTGAATGCCA
GCGGTCATCTCAAGATCATTGACCGGGTGAAGGACGTGGGCCGTATCAAGGGTGGCGCCAATGACGGCGCCCTGTTTGCG
CCGAAATACGTGGAGAACAAGCTCAAGTTTTTCCCGCACATCAAGGAAGTCGTGGCCTACGGCGACGGCCGTGAAAAGGT
CTGCGTGATGATCAACATCGACTTCGACGCGGTGGGCAACTGGGCCGAGCGGCGCAACCTGCCTTATGCGGGCTACACCG
ACCTGGCGCAAAAGCCGGAGGTCTACCAGCTCATCAAGGAGTGCGTCGAGAAGGTCAATGCCGACCTCAGCGTCGATGCG
CTGCTGGCCGGCTCGCAGATCAGCCGCTTCCTGATACTGCACAAGGAACTCGACGCCGATGACGGCGAGCTGACACGGAC
CAACAAGGTGCGCCGCGGCTTCATCGCCGAGAAATACCAGCCGCTGGTCGATGCCCTGTACGGCGGCAAAACCGAGCAGT
TCATTGAAACCGTGGTCAAGTTTGAAGACGGCCGCAGCGGCAGCGTCAGCGCCACGCTGAAGATCAGCGACACCCAAACC
TTCGCGCCCGTGAAGGCAGCAGCATGA

Upstream 100 bases:

>100_bases
AATGACACCATGACGTCAAATGCAGTCCTACTATTCGCTCTACACCAGCGGCTTTTCCGACAGAAAGGCTGCACAAAAAA
GAAAGAGACAAGGAACCGGA

Downstream 100 bases:

>100_bases
ATAACAACCGACAGCACGCCCCTCAAATGCCAGCTCGAGCCGCGGAACCGGCTTTGCCGGGCCGCAGGCGGGCGGCCCCC
TCGGGGGGCAGCGCAGTACA

Product: AMP-dependent synthetase and ligase

Products: NA

Alternate protein names: Long-chain acyl-CoA synthetase; LACS [H]

Number of amino acids: Translated: 648; Mature: 648

Protein sequence:

>648_residues
MQTTFPRLLLKHAAERPGAAAMREKEYGIWQAHSWAGMAELVEHIACGLHEAGLGRGEHMALIGANRPRLYATMLAAQSL
GAIPIPLYQDAVGAECVFPITNADVRFAMVEDQEQVDKLLEIRDRCPDLAHIIFDDPRGLRNYEEPGLTSLDRLIESGQA
LAVSQPGWFRMEVDKASPDDVAAMFFTSGTTGNPKGVVHTHATLLDRAQAGAEFDKLTSAEEVLAYLPPAWIGQNIFSYA
QWLACGYVVNCPESASTVMIDLKEVGPTYYFAPPRVFEGMLTTVMIRMEDAGRLKRGMFNYFMGVARQVGPALMDGKPVN
FIQTLLYGLGNLMVYGPLRNNLGFSRVRVAYTAGEAIGPDLFTFYRSIGINLKQLYGSTETAVFVCLQPDNEARADTVGV
PIQGVQIRVADNGEVLVKSAGLLKEYYKNPAATAEVLTADGWYHTSDAGFLNASGHLKIIDRVKDVGRIKGGANDGALFA
PKYVENKLKFFPHIKEVVAYGDGREKVCVMINIDFDAVGNWAERRNLPYAGYTDLAQKPEVYQLIKECVEKVNADLSVDA
LLAGSQISRFLILHKELDADDGELTRTNKVRRGFIAEKYQPLVDALYGGKTEQFIETVVKFEDGRSGSVSATLKISDTQT
FAPVKAAA

Sequences:

>Translated_648_residues
MQTTFPRLLLKHAAERPGAAAMREKEYGIWQAHSWAGMAELVEHIACGLHEAGLGRGEHMALIGANRPRLYATMLAAQSL
GAIPIPLYQDAVGAECVFPITNADVRFAMVEDQEQVDKLLEIRDRCPDLAHIIFDDPRGLRNYEEPGLTSLDRLIESGQA
LAVSQPGWFRMEVDKASPDDVAAMFFTSGTTGNPKGVVHTHATLLDRAQAGAEFDKLTSAEEVLAYLPPAWIGQNIFSYA
QWLACGYVVNCPESASTVMIDLKEVGPTYYFAPPRVFEGMLTTVMIRMEDAGRLKRGMFNYFMGVARQVGPALMDGKPVN
FIQTLLYGLGNLMVYGPLRNNLGFSRVRVAYTAGEAIGPDLFTFYRSIGINLKQLYGSTETAVFVCLQPDNEARADTVGV
PIQGVQIRVADNGEVLVKSAGLLKEYYKNPAATAEVLTADGWYHTSDAGFLNASGHLKIIDRVKDVGRIKGGANDGALFA
PKYVENKLKFFPHIKEVVAYGDGREKVCVMINIDFDAVGNWAERRNLPYAGYTDLAQKPEVYQLIKECVEKVNADLSVDA
LLAGSQISRFLILHKELDADDGELTRTNKVRRGFIAEKYQPLVDALYGGKTEQFIETVVKFEDGRSGSVSATLKISDTQT
FAPVKAAA
>Mature_648_residues
MQTTFPRLLLKHAAERPGAAAMREKEYGIWQAHSWAGMAELVEHIACGLHEAGLGRGEHMALIGANRPRLYATMLAAQSL
GAIPIPLYQDAVGAECVFPITNADVRFAMVEDQEQVDKLLEIRDRCPDLAHIIFDDPRGLRNYEEPGLTSLDRLIESGQA
LAVSQPGWFRMEVDKASPDDVAAMFFTSGTTGNPKGVVHTHATLLDRAQAGAEFDKLTSAEEVLAYLPPAWIGQNIFSYA
QWLACGYVVNCPESASTVMIDLKEVGPTYYFAPPRVFEGMLTTVMIRMEDAGRLKRGMFNYFMGVARQVGPALMDGKPVN
FIQTLLYGLGNLMVYGPLRNNLGFSRVRVAYTAGEAIGPDLFTFYRSIGINLKQLYGSTETAVFVCLQPDNEARADTVGV
PIQGVQIRVADNGEVLVKSAGLLKEYYKNPAATAEVLTADGWYHTSDAGFLNASGHLKIIDRVKDVGRIKGGANDGALFA
PKYVENKLKFFPHIKEVVAYGDGREKVCVMINIDFDAVGNWAERRNLPYAGYTDLAQKPEVYQLIKECVEKVNADLSVDA
LLAGSQISRFLILHKELDADDGELTRTNKVRRGFIAEKYQPLVDALYGGKTEQFIETVVKFEDGRSGSVSATLKISDTQT
FAPVKAAA

Specific function: Unknown

COG id: COG1022

COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

Organism=Homo sapiens, GI27477105, Length=614, Percent_Identity=23.4527687296417, Blast_Score=164, Evalue=3e-40,
Organism=Homo sapiens, GI40807491, Length=606, Percent_Identity=25.9075907590759, Blast_Score=162, Evalue=9e-40,
Organism=Homo sapiens, GI83745141, Length=617, Percent_Identity=23.5008103727715, Blast_Score=160, Evalue=5e-39,
Organism=Homo sapiens, GI42794760, Length=609, Percent_Identity=24.6305418719212, Blast_Score=149, Evalue=1e-35,
Organism=Homo sapiens, GI42794758, Length=609, Percent_Identity=24.6305418719212, Blast_Score=149, Evalue=1e-35,
Organism=Homo sapiens, GI42794756, Length=604, Percent_Identity=24.8344370860927, Blast_Score=148, Evalue=1e-35,
Organism=Homo sapiens, GI57165412, Length=615, Percent_Identity=24.390243902439, Blast_Score=141, Evalue=2e-33,
Organism=Homo sapiens, GI57165410, Length=615, Percent_Identity=24.7154471544715, Blast_Score=141, Evalue=2e-33,
Organism=Homo sapiens, GI12669909, Length=639, Percent_Identity=21.7527386541471, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI4758332, Length=639, Percent_Identity=21.7527386541471, Blast_Score=100, Evalue=7e-21,
Organism=Homo sapiens, GI42794754, Length=585, Percent_Identity=22.9059829059829, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI42794752, Length=585, Percent_Identity=22.9059829059829, Blast_Score=86, Evalue=1e-16,
Organism=Escherichia coli, GI145693145, Length=349, Percent_Identity=24.3553008595989, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788107, Length=349, Percent_Identity=24.3553008595989, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI221142682, Length=152, Percent_Identity=29.6052631578947, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17541856, Length=604, Percent_Identity=24.5033112582781, Blast_Score=142, Evalue=7e-34,
Organism=Caenorhabditis elegans, GI17510401, Length=598, Percent_Identity=22.9096989966555, Blast_Score=139, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17556552, Length=578, Percent_Identity=20.5882352941176, Blast_Score=123, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI193204819, Length=565, Percent_Identity=23.3628318584071, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17564090, Length=576, Percent_Identity=22.2222222222222, Blast_Score=110, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI32563687, Length=425, Percent_Identity=26.3529411764706, Blast_Score=97, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17558820, Length=158, Percent_Identity=35.4430379746835, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17553312, Length=639, Percent_Identity=22.3787167449139, Blast_Score=92, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71985884, Length=142, Percent_Identity=28.169014084507, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320852, Length=599, Percent_Identity=25.8764607679466, Blast_Score=126, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6324893, Length=627, Percent_Identity=24.2424242424242, Blast_Score=111, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6323903, Length=626, Percent_Identity=23.0031948881789, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6322182, Length=490, Percent_Identity=22.6530612244898, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI19921316, Length=626, Percent_Identity=24.1214057507987, Blast_Score=156, Evalue=6e-38,
Organism=Drosophila melanogaster, GI17933690, Length=598, Percent_Identity=22.0735785953177, Blast_Score=142, Evalue=1e-33,
Organism=Drosophila melanogaster, GI281366413, Length=579, Percent_Identity=23.3160621761658, Blast_Score=136, Evalue=5e-32,
Organism=Drosophila melanogaster, GI24666501, Length=596, Percent_Identity=22.9865771812081, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24666497, Length=596, Percent_Identity=22.9865771812081, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI62471679, Length=601, Percent_Identity=21.9633943427621, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI62471683, Length=601, Percent_Identity=21.9633943427621, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI62471685, Length=601, Percent_Identity=21.9633943427621, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24586636, Length=601, Percent_Identity=21.9633943427621, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI62471689, Length=602, Percent_Identity=21.9269102990033, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI62471681, Length=602, Percent_Identity=21.9269102990033, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI62471687, Length=602, Percent_Identity=21.9269102990033, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24586634, Length=602, Percent_Identity=21.9269102990033, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI22026970, Length=602, Percent_Identity=21.9269102990033, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24648257, Length=153, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21358303, Length=136, Percent_Identity=27.2058823529412, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281365686, Length=140, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.3 [H]

Molecular weight: Translated: 71145; Mature: 71145

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTFPRLLLKHAAERPGAAAMREKEYGIWQAHSWAGMAELVEHIACGLHEAGLGRGEHM
CCCHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCHHHCCCCCCEE
ALIGANRPRLYATMLAAQSLGAIPIPLYQDAVGAECVFPITNADVRFAMVEDQEQVDKLL
EEEECCCCHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHH
EIRDRCPDLAHIIFDDPRGLRNYEEPGLTSLDRLIESGQALAVSQPGWFRMEVDKASPDD
HHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCC
VAAMFFTSGTTGNPKGVVHTHATLLDRAQAGAEFDKLTSAEEVLAYLPPAWIGQNIFSYA
EEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCHHHHHCCHHHHHHHCCCHHHHHHHHHHH
QWLACGYVVNCPESASTVMIDLKEVGPTYYFAPPRVFEGMLTTVMIRMEDAGRLKRGMFN
HHHHCCEEEECCCCCCEEEEEHHHCCCEEEECCHHHHHHHHHHHEEEECCHHHHHHHHHH
YFMGVARQVGPALMDGKPVNFIQTLLYGLGNLMVYGPLRNNLGFSRVRVAYTAGEAIGPD
HHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCEEEEECHHCCCCCCCEEEEEECCCCCCHH
LFTFYRSIGINLKQLYGSTETAVFVCLQPDNEARADTVGVPIQGVQIRVADNGEVLVKSA
HHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEHH
GLLKEYYKNPAATAEVLTADGWYHTSDAGFLNASGHLKIIDRVKDVGRIKGGANDGALFA
HHHHHHHCCCCCCEEEEEECCEEECCCCCEECCCCCEEHHHHHHHHHHHCCCCCCCCEEC
PKYVENKLKFFPHIKEVVAYGDGREKVCVMINIDFDAVGNWAERRNLPYAGYTDLAQKPE
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHCCHHHHCCCCCCCCHHHCCCCH
VYQLIKECVEKVNADLSVDALLAGSQISRFLILHKELDADDGELTRTNKVRRGFIAEKYQ
HHHHHHHHHHHCCCCCCCHHHHCCHHHHHEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHH
PLVDALYGGKTEQFIETVVKFEDGRSGSVSATLKISDTQTFAPVKAAA
HHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MQTTFPRLLLKHAAERPGAAAMREKEYGIWQAHSWAGMAELVEHIACGLHEAGLGRGEHM
CCCHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCCCCHHHHHHHHHHCCHHHCCCCCCEE
ALIGANRPRLYATMLAAQSLGAIPIPLYQDAVGAECVFPITNADVRFAMVEDQEQVDKLL
EEEECCCCHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCEEEEEECCHHHHHHHH
EIRDRCPDLAHIIFDDPRGLRNYEEPGLTSLDRLIESGQALAVSQPGWFRMEVDKASPDD
HHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCC
VAAMFFTSGTTGNPKGVVHTHATLLDRAQAGAEFDKLTSAEEVLAYLPPAWIGQNIFSYA
EEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCHHHHHCCHHHHHHHCCCHHHHHHHHHHH
QWLACGYVVNCPESASTVMIDLKEVGPTYYFAPPRVFEGMLTTVMIRMEDAGRLKRGMFN
HHHHCCEEEECCCCCCEEEEEHHHCCCEEEECCHHHHHHHHHHHEEEECCHHHHHHHHHH
YFMGVARQVGPALMDGKPVNFIQTLLYGLGNLMVYGPLRNNLGFSRVRVAYTAGEAIGPD
HHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCEEEEECHHCCCCCCCEEEEEECCCCCCHH
LFTFYRSIGINLKQLYGSTETAVFVCLQPDNEARADTVGVPIQGVQIRVADNGEVLVKSA
HHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEHH
GLLKEYYKNPAATAEVLTADGWYHTSDAGFLNASGHLKIIDRVKDVGRIKGGANDGALFA
HHHHHHHCCCCCCEEEEEECCEEECCCCCEECCCCCEEHHHHHHHHHHHCCCCCCCCEEC
PKYVENKLKFFPHIKEVVAYGDGREKVCVMINIDFDAVGNWAERRNLPYAGYTDLAQKPE
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHCCHHHHCCCCCCCCHHHCCCCH
VYQLIKECVEKVNADLSVDALLAGSQISRFLILHKELDADDGELTRTNKVRRGFIAEKYQ
HHHHHHHHHHHCCCCCCCHHHHCCHHHHHEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHH
PLVDALYGGKTEQFIETVVKFEDGRSGSVSATLKISDTQTFAPVKAAA
HHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]