| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yagQ [H]
Identifier: 91786478
GI number: 91786478
Start: 574131
End: 575225
Strand: Reverse
Name: yagQ [H]
Synonym: Bpro_0572
Alternate gene names: 91786478
Gene position: 575225-574131 (Counterclockwise)
Preceding gene: 91786479
Following gene: 91786469
Centisome position: 11.06
GC content: 66.67
Gene sequence:
>1095_bases ATGGAAAATCTCGATGTGATGGTGCTGCGGACCTTGCGCGACTGGCGCACGGCGGGCAAGCGCGCCTTGCTGGCCACCGT GGTACGCACCTGGGGCTCGTCGCCGCGACCGGTGGGCTCGATCATGGCGCTGTGTGAAGACGGCGCGGTGGTGGGCTCGG TCTCCGGCGGCTGCATCGAAGACGACCTGATTTACCAGTACACACGCGCCTACGCGTCGGCGGCCGCCCAGCCCGGCGGT GCTGGTGCTGGCAGCCAGCAGATCCCGTCGGGTCCGCCCGCTTTCATCAAGTACGGCATCACCGCCGACGAGGCGCACCG CTTTGGCCTGCCCTGCGGCGGCACGCTGGAGCTGGTGCTGGAGTACGACCCCGATGTCGGCCACCTGGCGCAGCTGGTCG AGGCGCTGGAAGCCGGGCAGCTGATGCAGCGCAGCGTGCACCTGGCCGATGGCTCGGTGACGCTGGCGCAGGCCACGGCA CCTGCAGCGCTCAGCGTTTCGGCCACGGAACTCGTCAACACCTTCGGCCCTGAATACCGCATGTTGCTGATTGGCGCCGG CCAGTTGACCGAATACCTCGCCACGATGGCGCTGTTCAGCGGCTTTGCCGTCACTGTCTGCGATCCGCGCGAAGAATACC GCAGCGCGTGGCAGGTAGCGGGCGCCAAAGTGCTCAGCGACATGCCGGACGATGTGGTGGTGGCCTTCAAGCCCGACCGG CGCAGCTGCGTGATTGCGCTCACGCACGACCCCAAGCTCGATGACCTGGCTTTGCTGGAAGCCCTGGGCACCGATGCGTT CTATGTAGGCGCCATCGGCTCGCGGCGCAACAACGAGGCACGGCACCAGCGCATGATCGAGCACTTCGGCCAGACCGAAG CCACGCTGTCGCGCCTGCGCGGCCCCATCGGCATTTACATCGGCAGCAAGACACCGCCGGAAATTGCCGTCAGTGTGATG GCGGAGGTTCTGGCCGTAAAAAATGGCGTGACGCTGCCGCGCGACATGGAAGTGGCCCGGGCCAAGAACGAGCGCGCCGT AGCGGCTAATCCGGAAGGCGACCTGGTGTGCGGCGTGGATGGCAGCCATTCCTGA
Upstream 100 bases:
>100_bases CATGTGGGTCTGGGTCGGCGGTGCGGTGGTGGTCGTGCTGCTTGCGCTCGTGGCATTGTGGCCCCGTTGAAAATTCGGCA ATGTCGGTCAAGGATAGTGA
Downstream 100 bases:
>100_bases GCCACTTTCATCAGTTCAGGAAATTCAAACCTCCGGGCAAACCGTGTGCTGTGCACCGACCATCACCCTGGCCGGGTGCC GGCCCTACGCGACTTCGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MENLDVMVLRTLRDWRTAGKRALLATVVRTWGSSPRPVGSIMALCEDGAVVGSVSGGCIEDDLIYQYTRAYASAAAQPGG AGAGSQQIPSGPPAFIKYGITADEAHRFGLPCGGTLELVLEYDPDVGHLAQLVEALEAGQLMQRSVHLADGSVTLAQATA PAALSVSATELVNTFGPEYRMLLIGAGQLTEYLATMALFSGFAVTVCDPREEYRSAWQVAGAKVLSDMPDDVVVAFKPDR RSCVIALTHDPKLDDLALLEALGTDAFYVGAIGSRRNNEARHQRMIEHFGQTEATLSRLRGPIGIYIGSKTPPEIAVSVM AEVLAVKNGVTLPRDMEVARAKNERAVAANPEGDLVCGVDGSHS
Sequences:
>Translated_364_residues MENLDVMVLRTLRDWRTAGKRALLATVVRTWGSSPRPVGSIMALCEDGAVVGSVSGGCIEDDLIYQYTRAYASAAAQPGG AGAGSQQIPSGPPAFIKYGITADEAHRFGLPCGGTLELVLEYDPDVGHLAQLVEALEAGQLMQRSVHLADGSVTLAQATA PAALSVSATELVNTFGPEYRMLLIGAGQLTEYLATMALFSGFAVTVCDPREEYRSAWQVAGAKVLSDMPDDVVVAFKPDR RSCVIALTHDPKLDDLALLEALGTDAFYVGAIGSRRNNEARHQRMIEHFGQTEATLSRLRGPIGIYIGSKTPPEIAVSVM AEVLAVKNGVTLPRDMEVARAKNERAVAANPEGDLVCGVDGSHS >Mature_364_residues MENLDVMVLRTLRDWRTAGKRALLATVVRTWGSSPRPVGSIMALCEDGAVVGSVSGGCIEDDLIYQYTRAYASAAAQPGG AGAGSQQIPSGPPAFIKYGITADEAHRFGLPCGGTLELVLEYDPDVGHLAQLVEALEAGQLMQRSVHLADGSVTLAQATA PAALSVSATELVNTFGPEYRMLLIGAGQLTEYLATMALFSGFAVTVCDPREEYRSAWQVAGAKVLSDMPDDVVVAFKPDR RSCVIALTHDPKLDDLALLEALGTDAFYVGAIGSRRNNEARHQRMIEHFGQTEATLSRLRGPIGIYIGSKTPPEIAVSVM AEVLAVKNGVTLPRDMEVARAKNERAVAANPEGDLVCGVDGSHS
Specific function: Unknown
COG id: COG1975
COG function: function code O; Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786477, Length=320, Percent_Identity=25.3125, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1789240, Length=189, Percent_Identity=28.042328042328, Blast_Score=65, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003777 [H]
Pfam domain/function: PF02625 XdhC_CoxI [H]
EC number: NA
Molecular weight: Translated: 38609; Mature: 38609
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENLDVMVLRTLRDWRTAGKRALLATVVRTWGSSPRPVGSIMALCEDGAVVGSVSGGCIE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCCCC DDLIYQYTRAYASAAAQPGGAGAGSQQIPSGPPAFIKYGITADEAHRFGLPCGGTLELVL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCCHHHHHHCCCCCCCEEEEEE EYDPDVGHLAQLVEALEAGQLMQRSVHLADGSVTLAQATAPAALSVSATELVNTFGPEYR EECCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEECHHHHHHHHCCCCEE MLLIGAGQLTEYLATMALFSGFAVTVCDPREEYRSAWQVAGAKVLSDMPDDVVVAFKPDR EEEEECHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC RSCVIALTHDPKLDDLALLEALGTDAFYVGAIGSRRNNEARHQRMIEHFGQTEATLSRLR CEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHC GPIGIYIGSKTPPEIAVSVMAEVLAVKNGVTLPRDMEVARAKNERAVAANPEGDLVCGVD CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEECCCCCEEECCC GSHS CCCC >Mature Secondary Structure MENLDVMVLRTLRDWRTAGKRALLATVVRTWGSSPRPVGSIMALCEDGAVVGSVSGGCIE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCCCC DDLIYQYTRAYASAAAQPGGAGAGSQQIPSGPPAFIKYGITADEAHRFGLPCGGTLELVL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCCHHHHHHCCCCCCCEEEEEE EYDPDVGHLAQLVEALEAGQLMQRSVHLADGSVTLAQATAPAALSVSATELVNTFGPEYR EECCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEECHHHHHHHHCCCCEE MLLIGAGQLTEYLATMALFSGFAVTVCDPREEYRSAWQVAGAKVLSDMPDDVVVAFKPDR EEEEECHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC RSCVIALTHDPKLDDLALLEALGTDAFYVGAIGSRRNNEARHQRMIEHFGQTEATLSRLR CEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHC GPIGIYIGSKTPPEIAVSVMAEVLAVKNGVTLPRDMEVARAKNERAVAANPEGDLVCGVD CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEECCCCCEEECCC GSHS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]