| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yiaM [C]
Identifier: 91786460
GI number: 91786460
Start: 553244
End: 553774
Strand: Direct
Name: yiaM [C]
Synonym: Bpro_0554
Alternate gene names: 91786460
Gene position: 553244-553774 (Clockwise)
Preceding gene: 91786459
Following gene: 91786461
Centisome position: 10.64
GC content: 67.42
Gene sequence:
>531_bases ATGACAACGGAAACAATCGCGCTTGAACCGGTCGTGCCCGCAGGCTGGGCCGGGCGCGCACTCGACGGGCTGAACCGGCT CATCACCGGCGTGCTGCTCGCCACGGTAGCGGTGATGGTGAGCGTCGTGTCGGCGCAGGTTGCGCTGCGCTATGGCTTGA ATCGCTCGATCGACTGGGCCGACGAGATCGGACGCCTGGCTTTCGTCTGGTCCATCTTTCTGGCGATCCCGCTGGGGGTG CGCCAGGGCGCGCATATTGGCATCGACATCATGGTCGACAAGTTGCCAGCCCGCTGGCGCGGCGCGCTCAAGCGGGCCGG CGCGGCCCTGTGCGCCGCCATGATGTTTGCGATTGCCTGGGCGGCCTTCCGTGTGGCGCGCGAGCAATGGGATGAACTGA TGGCGACGGTGGACTGGAGTGTCGGCTGGTTCATTGTGCCGGTGGGCCTGGGCGCGCTGCTGAGCGCGCTGCACCTGGTG CGCATCGTCATCGCGGGTGCGCCTGTGCAGGCGCTGGGGAGTGCCGAATGA
Upstream 100 bases:
>100_bases TCATCGAGGACGTGAAGAAGCGTGCCGGCGCTGACCTGGTGAACCAAGTGCTGGCCGAAGCCGCCAGGCGCTGACCCGGC CGGCACGCAAGGAGACCGCT
Downstream 100 bases:
>100_bases GTCTCGCCGTCGTCATTGCCTTCATGCTGCTGGCCCTGCTCGGGCTGCCGATCGCCTTTGCGATGGGCGTGGCCGCGCTC GGCGCCCTCTGGTACAGCGG
Product: tripartite ATP-independent periplasmic transporter DctQ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MTTETIALEPVVPAGWAGRALDGLNRLITGVLLATVAVMVSVVSAQVALRYGLNRSIDWADEIGRLAFVWSIFLAIPLGV RQGAHIGIDIMVDKLPARWRGALKRAGAALCAAMMFAIAWAAFRVAREQWDELMATVDWSVGWFIVPVGLGALLSALHLV RIVIAGAPVQALGSAE
Sequences:
>Translated_176_residues MTTETIALEPVVPAGWAGRALDGLNRLITGVLLATVAVMVSVVSAQVALRYGLNRSIDWADEIGRLAFVWSIFLAIPLGV RQGAHIGIDIMVDKLPARWRGALKRAGAALCAAMMFAIAWAAFRVAREQWDELMATVDWSVGWFIVPVGLGALLSALHLV RIVIAGAPVQALGSAE >Mature_175_residues TTETIALEPVVPAGWAGRALDGLNRLITGVLLATVAVMVSVVSAQVALRYGLNRSIDWADEIGRLAFVWSIFLAIPLGVR QGAHIGIDIMVDKLPARWRGALKRAGAALCAAMMFAIAWAAFRVAREQWDELMATVDWSVGWFIVPVGLGALLSALHLVR IVIAGAPVQALGSAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18768; Mature: 18637
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTETIALEPVVPAGWAGRALDGLNRLITGVLLATVAVMVSVVSAQVALRYGLNRSIDWA CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DEIGRLAFVWSIFLAIPLGVRQGAHIGIDIMVDKLPARWRGALKRAGAALCAAMMFAIAW HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AAFRVAREQWDELMATVDWSVGWFIVPVGLGALLSALHLVRIVIAGAPVQALGSAE HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC >Mature Secondary Structure TTETIALEPVVPAGWAGRALDGLNRLITGVLLATVAVMVSVVSAQVALRYGLNRSIDWA CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DEIGRLAFVWSIFLAIPLGVRQGAHIGIDIMVDKLPARWRGALKRAGAALCAAMMFAIAW HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AAFRVAREQWDELMATVDWSVGWFIVPVGLGALLSALHLVRIVIAGAPVQALGSAE HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA