| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is resE [H]
Identifier: 91786450
GI number: 91786450
Start: 541905
End: 543368
Strand: Direct
Name: resE [H]
Synonym: Bpro_0544
Alternate gene names: 91786450
Gene position: 541905-543368 (Clockwise)
Preceding gene: 91786449
Following gene: 91786452
Centisome position: 10.42
GC content: 63.59
Gene sequence:
>1464_bases ATGAGCTTCAGAGGCACCCTCTCGCAACGTCTATCCGTAGTGTTTTCGGTCCTGCTGCTGGCTTGCTGCAGTGCATCGGC GTGGCTACAGATAAAGGCAAATGGGCGCCATGATCAGGAAGTGACCCAGCGCCTCTCCAACGGCCTTGCAGCACACATCG CAGACAACGCTGCGCTCGTGGAACGCGACGGACTCAACCCGGAGGCCGTGCACGATCTGTTCGACAAACTGATGGCGGTC AATCCTAGCGTTGAGGTCTACTTGTTGGATCTGGACGGTCGCATTCAGGCTCAGGCCGCACCGCCTGGGCACTTGAAGCG TGACCGGGTCGACGTCGCGCCCATCCGACGCCTTCTCGAAGGCACACCCTTGCCGATCGTCGGCGACGATCCGCGAGGTG ATGGCGTGCAGAAAGTGTTCAGTGCGGCACCCTTGCGCGTCGATGACCGCGATGTCGGCTATGTCTACGTCGTGTTGTTC GGCGAGGACCGTGATGCGGTGGCTGCCAACGTCGCGGCGAACAGTGTACTCAGGACCACCCTGTGGTCGATGGCTCTCGT GGCGCTGCTAGGCCTGCTGGCCGGACTGGCGGCCTTTCACCTGATCACCCGGCCGCTGCGCGATCTCACCGGTGCGGTGC GCAAATTCGAGAAAGACGGCGTGGTGTCGCTGCACGAGGCGGGGCCGGCCCTCGAACGGGCGGGCCGGGGCAGCGACGAA ATCGCCACACTGGGACAGGCCTTTGCGCAGATGACACAGCGCATCGCGGCGCAGTGGCGCGAACTCACGGCGCAGGACCA GCAGCGGCGCGAACTGTTTGCCAACATTTCGCACGACCTGCGCACACCGCTCACCTCTCTGCACGGTTACCTCGAAACGC TGCTCATCAAGGCCGACGCCCTGGACCCCGGCGAACGCCGCCGCTACCTCGAGATCGCGTTGGCGCAAAGCCGTAAGGTC GCGCGGCTGGCGCAGGAATTGTTCGAGCTGGCGCGTCTGGAGTACGGCGTCGTCAAGCCCGACAAGGAGACTTTCGCCCT GGCCGACCTGGTGCAGGACGTGTTCCAGAAGTTCGAATTGGCGGCAGAGGCGCGGCACCAACGTCTGGTGCCGGACATTG CACCAGGCCTTCCCGTCGTTACAGCCGATCTCGGCATGATCGAGCGCGTGCTGACCAACCTGCTGGACAACGCGATCCGC CACACGCCCGAGGGCGGCGAGATCGTGGTGCAGCTACGACAAGACCGGGAGTCCGTGTGCGTCGAGGTCAGCGACACCGG ACCGGGCATTCCCGGCGAGTTACAGAAGTCGCTCTTCACCCGACCCGCGTTTTCGTCGGCCGGCGGCCGCAGCGGCGGAC TCGGACTGGTCATTGTGCAACGCATACTTCAGTTGCATGGCAGCGACATTCGGCTGCTGCAGCGTGCCGAGAAAGGTGCC GTATTTTTCTTTCAACTCACATGA
Upstream 100 bases:
>100_bases GCATGAAGGTCGAGGCGGATCCAACGGAGCCGCGGCGTATCCTCACGGTGTGGGGGCGCGGCTACAAGTTGGCGATATCG GCCATGGAGGAGAGCGGCGA
Downstream 100 bases:
>100_bases GAGTCACCGCTCGCGCAAGACTCCTTGTCCGTCTAGTGCACCGCCCGCCTCGATGCCCACGTGCCTCTTTTTGCACCATG GCACCGAAATTGAACCCCCC
Product: periplasmic sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MSFRGTLSQRLSVVFSVLLLACCSASAWLQIKANGRHDQEVTQRLSNGLAAHIADNAALVERDGLNPEAVHDLFDKLMAV NPSVEVYLLDLDGRIQAQAAPPGHLKRDRVDVAPIRRLLEGTPLPIVGDDPRGDGVQKVFSAAPLRVDDRDVGYVYVVLF GEDRDAVAANVAANSVLRTTLWSMALVALLGLLAGLAAFHLITRPLRDLTGAVRKFEKDGVVSLHEAGPALERAGRGSDE IATLGQAFAQMTQRIAAQWRELTAQDQQRRELFANISHDLRTPLTSLHGYLETLLIKADALDPGERRRYLEIALAQSRKV ARLAQELFELARLEYGVVKPDKETFALADLVQDVFQKFELAAEARHQRLVPDIAPGLPVVTADLGMIERVLTNLLDNAIR HTPEGGEIVVQLRQDRESVCVEVSDTGPGIPGELQKSLFTRPAFSSAGGRSGGLGLVIVQRILQLHGSDIRLLQRAEKGA VFFFQLT
Sequences:
>Translated_487_residues MSFRGTLSQRLSVVFSVLLLACCSASAWLQIKANGRHDQEVTQRLSNGLAAHIADNAALVERDGLNPEAVHDLFDKLMAV NPSVEVYLLDLDGRIQAQAAPPGHLKRDRVDVAPIRRLLEGTPLPIVGDDPRGDGVQKVFSAAPLRVDDRDVGYVYVVLF GEDRDAVAANVAANSVLRTTLWSMALVALLGLLAGLAAFHLITRPLRDLTGAVRKFEKDGVVSLHEAGPALERAGRGSDE IATLGQAFAQMTQRIAAQWRELTAQDQQRRELFANISHDLRTPLTSLHGYLETLLIKADALDPGERRRYLEIALAQSRKV ARLAQELFELARLEYGVVKPDKETFALADLVQDVFQKFELAAEARHQRLVPDIAPGLPVVTADLGMIERVLTNLLDNAIR HTPEGGEIVVQLRQDRESVCVEVSDTGPGIPGELQKSLFTRPAFSSAGGRSGGLGLVIVQRILQLHGSDIRLLQRAEKGA VFFFQLT >Mature_486_residues SFRGTLSQRLSVVFSVLLLACCSASAWLQIKANGRHDQEVTQRLSNGLAAHIADNAALVERDGLNPEAVHDLFDKLMAVN PSVEVYLLDLDGRIQAQAAPPGHLKRDRVDVAPIRRLLEGTPLPIVGDDPRGDGVQKVFSAAPLRVDDRDVGYVYVVLFG EDRDAVAANVAANSVLRTTLWSMALVALLGLLAGLAAFHLITRPLRDLTGAVRKFEKDGVVSLHEAGPALERAGRGSDEI ATLGQAFAQMTQRIAAQWRELTAQDQQRRELFANISHDLRTPLTSLHGYLETLLIKADALDPGERRRYLEIALAQSRKVA RLAQELFELARLEYGVVKPDKETFALADLVQDVFQKFELAAEARHQRLVPDIAPGLPVVTADLGMIERVLTNLLDNAIRH TPEGGEIVVQLRQDRESVCVEVSDTGPGIPGELQKSLFTRPAFSSAGGRSGGLGLVIVQRILQLHGSDIRLLQRAEKGAV FFFQLT
Specific function: Member of the two-component regulatory system resD/resE involved in the global regulation of aerobic and anaerobic respiration. Probably phosphorylates resD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1786912, Length=229, Percent_Identity=31.4410480349345, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1790861, Length=357, Percent_Identity=28.0112044817927, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786600, Length=221, Percent_Identity=31.2217194570136, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788549, Length=213, Percent_Identity=29.1079812206573, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1789149, Length=284, Percent_Identity=28.5211267605634, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1786783, Length=321, Percent_Identity=27.4143302180685, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1788713, Length=221, Percent_Identity=26.2443438914027, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI87081816, Length=340, Percent_Identity=28.8235294117647, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1790436, Length=237, Percent_Identity=28.2700421940928, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1790551, Length=299, Percent_Identity=28.7625418060201, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1788393, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI145693157, Length=226, Percent_Identity=27.8761061946903, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI48994928, Length=220, Percent_Identity=26.3636363636364, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI87082128, Length=316, Percent_Identity=23.4177215189873, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1790346, Length=270, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1790300, Length=238, Percent_Identity=28.1512605042017, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1789403, Length=332, Percent_Identity=28.6144578313253, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788279, Length=231, Percent_Identity=25.1082251082251, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53239; Mature: 53108
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFRGTLSQRLSVVFSVLLLACCSASAWLQIKANGRHDQEVTQRLSNGLAAHIADNAALV CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCCEE ERDGLNPEAVHDLFDKLMAVNPSVEVYLLDLDGRIQAQAAPPGHLKRDRVDVAPIRRLLE ECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHC GTPLPIVGDDPRGDGVQKVFSAAPLRVDDRDVGYVYVVLFGEDRDAVAANVAANSVLRTT CCCCCEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH LWSMALVALLGLLAGLAAFHLITRPLRDLTGAVRKFEKDGVVSLHEAGPALERAGRGSDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCHHHHHCCCCCHH IATLGQAFAQMTQRIAAQWRELTAQDQQRRELFANISHDLRTPLTSLHGYLETLLIKADA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LDPGERRRYLEIALAQSRKVARLAQELFELARLEYGVVKPDKETFALADLVQDVFQKFEL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AAEARHQRLVPDIAPGLPVVTADLGMIERVLTNLLDNAIRHTPEGGEIVVQLRQDRESVC HHHHHHHHCCCHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCEE VEVSDTGPGIPGELQKSLFTRPAFSSAGGRSGGLGLVIVQRILQLHGSDIRLLQRAEKGA EEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC VFFFQLT EEEEEEC >Mature Secondary Structure SFRGTLSQRLSVVFSVLLLACCSASAWLQIKANGRHDQEVTQRLSNGLAAHIADNAALV CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCCEE ERDGLNPEAVHDLFDKLMAVNPSVEVYLLDLDGRIQAQAAPPGHLKRDRVDVAPIRRLLE ECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHC GTPLPIVGDDPRGDGVQKVFSAAPLRVDDRDVGYVYVVLFGEDRDAVAANVAANSVLRTT CCCCCEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH LWSMALVALLGLLAGLAAFHLITRPLRDLTGAVRKFEKDGVVSLHEAGPALERAGRGSDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCHHHHHCCCCCHH IATLGQAFAQMTQRIAAQWRELTAQDQQRRELFANISHDLRTPLTSLHGYLETLLIKADA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LDPGERRRYLEIALAQSRKVARLAQELFELARLEYGVVKPDKETFALADLVQDVFQKFEL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AAEARHQRLVPDIAPGLPVVTADLGMIERVLTNLLDNAIRHTPEGGEIVVQLRQDRESVC HHHHHHHHCCCHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCEE VEVSDTGPGIPGELQKSLFTRPAFSSAGGRSGGLGLVIVQRILQLHGSDIRLLQRAEKGA EEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC VFFFQLT EEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 8631715 [H]