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The map label for this gene is yhjC [H]

Identifier: 91786428

GI number: 91786428

Start: 523953

End: 524864

Strand: Reverse

Name: yhjC [H]

Synonym: Bpro_0519

Alternate gene names: 91786428

Gene position: 524864-523953 (Counterclockwise)

Preceding gene: 91786432

Following gene: 91786425

Centisome position: 10.09

GC content: 56.69

Gene sequence:

>912_bases
ATGGACAAGATAGAATCGATCACGGCGTTTGTCTCGGTCGCGCGTGCTGGAGGCTTCTCGGCGGCGAGCCGAGAAATCGG
TGTGCCATTGGCCACCCTCAGCCGCAGGGTCGCGGAACTCGAAACATCACTGGGTGTGCGTCTATTCCATCGCTCGACGC
GCCAGATAGTGCTGACCGAAAGCGGTATTGGCTACTTCGCAGCGTGCCAGCATATTCTTGAGTATCTAAAGGATGCCGAA
GAAACGGTTGTTGGTGAGTACCGATCGCCAAAAGGTGAGCTGTCCATAACGGCCCCTGTGGGTTTCGGCAGGCAGCACTT
GCAGCCTGTCGCGACAGAGTTTCTTCGCGCTTACCCTGATATCGACCTTCGTCTCTTGCTCGTTGATCGCATGGTTGATC
TGGTCGGTGAGCATCTTGATTTAGCCGTGCGCATCAGCACGCTGTCCGATAGCGGTCAGGTTGCTCGATCGGTGGGAGAA
ATCAAGATGATTGTTTTTGGTGCCCCGGGCTATCTCAAAGCGCGCGGCATGCCGAAGCACCCTTCGGAACTCGTGCGACA
CAGCTGCATTTCCTGGACTAGCTTGGGGCCTTATAAAGCCTGGCTGTTTCGAGAGGGCGGCCTAGAGGCAATGTTTCCGA
TTCGCGCTCGCCTGACAACCACTACACCTGAATCTGCCATTACAGCCGCCGTAGCGGAACTTGGGCTGGTCCAGGCGACG
TCGTATCAGGCTGAAGATGCAGTGCGATCAGGACTGTTGATCCCCGTACTCAGAGATTTTGAGGCGCTGCCAACGCCAGT
TAGCCTTGTATACCCAAGCAGCCGGCTCGTTCCTCTGAAGCTTCGGGTGTTTCTCGATTTTGCGGCACCGCGCCTGGCGG
CCCGTTTAGAGTCCGTTGCGAAGACACTCTAG

Upstream 100 bases:

>100_bases
TGAGAATGGCGCTTTTTTTGCGTGGTGTAATGATGGATCTTCTTGGCTTGCTTGATAAGCCGGGACATTTGATAATCACT
TTTCCGAGTTCCGAGAAGGT

Downstream 100 bases:

>100_bases
GTTATCTCTCGCGGGTGCCGAGCAACCTGAATGACGTCGGCAGGCTCGGCGCGCAGAGCTGTGGCCGCCACCGATACGCC
GGGCTGCAGGCACTGCTGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDKIESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTESGIGYFAACQHILEYLKDAE
ETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPDIDLRLLLVDRMVDLVGEHLDLAVRISTLSDSGQVARSVGE
IKMIVFGAPGYLKARGMPKHPSELVRHSCISWTSLGPYKAWLFREGGLEAMFPIRARLTTTTPESAITAAVAELGLVQAT
SYQAEDAVRSGLLIPVLRDFEALPTPVSLVYPSSRLVPLKLRVFLDFAAPRLAARLESVAKTL

Sequences:

>Translated_303_residues
MDKIESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTESGIGYFAACQHILEYLKDAE
ETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPDIDLRLLLVDRMVDLVGEHLDLAVRISTLSDSGQVARSVGE
IKMIVFGAPGYLKARGMPKHPSELVRHSCISWTSLGPYKAWLFREGGLEAMFPIRARLTTTTPESAITAAVAELGLVQAT
SYQAEDAVRSGLLIPVLRDFEALPTPVSLVYPSSRLVPLKLRVFLDFAAPRLAARLESVAKTL
>Mature_303_residues
MDKIESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTESGIGYFAACQHILEYLKDAE
ETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPDIDLRLLLVDRMVDLVGEHLDLAVRISTLSDSGQVARSVGE
IKMIVFGAPGYLKARGMPKHPSELVRHSCISWTSLGPYKAWLFREGGLEAMFPIRARLTTTTPESAITAAVAELGLVQAT
SYQAEDAVRSGLLIPVLRDFEALPTPVSLVYPSSRLVPLKLRVFLDFAAPRLAARLESVAKTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=31.5614617940199, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=30.4195804195804, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=26.9230769230769, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=28.3276450511945, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=29.4736842105263, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=27.4576271186441, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=28.8194444444444, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789173, Length=295, Percent_Identity=25.0847457627119, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787601, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790011, Length=284, Percent_Identity=21.1267605633803, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786448, Length=248, Percent_Identity=26.6129032258064, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788706, Length=262, Percent_Identity=20.9923664122137, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33059; Mature: 33059

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50931 HTH_LYSR ; PS00289 PENTAXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTE
CCHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEE
SGIGYFAACQHILEYLKDAEETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPD
CCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
IDLRLLLVDRMVDLVGEHLDLAVRISTLSDSGQVARSVGEIKMIVFGAPGYLKARGMPKH
CCEEHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHCCEEEEEEECCCCEECCCCCCC
PSELVRHSCISWTSLGPYKAWLFREGGLEAMFPIRARLTTTTPESAITAAVAELGLVQAT
HHHHHHHHHHCCCCCCCHHEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
SYQAEDAVRSGLLIPVLRDFEALPTPVSLVYPSSRLVPLKLRVFLDFAAPRLAARLESVA
CCCHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHH
KTL
HCC
>Mature Secondary Structure
MDKIESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTE
CCHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEE
SGIGYFAACQHILEYLKDAEETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPD
CCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
IDLRLLLVDRMVDLVGEHLDLAVRISTLSDSGQVARSVGEIKMIVFGAPGYLKARGMPKH
CCEEHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHCCEEEEEEECCCCEECCCCCCC
PSELVRHSCISWTSLGPYKAWLFREGGLEAMFPIRARLTTTTPESAITAAVAELGLVQAT
HHHHHHHHHHCCCCCCCHHEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
SYQAEDAVRSGLLIPVLRDFEALPTPVSLVYPSSRLVPLKLRVFLDFAAPRLAARLESVA
CCCHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHHH
KTL
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]