| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786393
Identifier: 91786393
GI number: 91786393
Start: 499053
End: 500792
Strand: Direct
Name: 91786393
Synonym: Bpro_0483
Alternate gene names: NA
Gene position: 499053-500792 (Clockwise)
Preceding gene: 91786392
Following gene: 91786394
Centisome position: 9.6
GC content: 60.69
Gene sequence:
>1740_bases ATGAAGATGCGTAACACACGTCGGACGGCACTGGCACTGGCCGCTGCCTGCGCAATGGCCGGGCCCGGCTGGGCAGACGA AGCCGCCGCCAGAAAATGGATTGACGCTGAGTTTCAGCCATCCACCCTGAGCAAAGACAAGCAACAGGCGGAGATGAAGT GGTTTATTGATGCCGCCAAAAAGCTGCAGGCCAAGGGCGTCAAGGAAATCTCGGTGGTGTCGGAAACCATCACCACGCAC GAATACGAATCGAAGACGCTGGCCAAGGCCTTCGAGGAAATCACCGGCATCAAGGTCAAGCACGACCTGATCCAGGAGGG TGATGTGGTCGAGAAGCTGCAGACCTCGATGCAGTCGGGCAAGTCGATTTATGACGGCTGGGTTTCCGACTCCGACCTGA TCGGTACCCACTACCGCTACGGCAAGATCATGAACCTGACCGACTACATGGCCGGCAAGGGCAAGGACTATACCAACCCT GGGCTGGACCTGAAGGACTTCATCGGCACCAAGTTCACGACGGGTCCTGACGGCAAGCTTTACCAGTTGCCCGACCAACA ATTCGCCAACCTCTACTGGTTCCGCGCCGACCTGTTTGCGCGTCAGGACCTGAAAGACAAGTTCAAGGCCAAGTATGGCT ACGACCTGGGCGTGCCGCTCAACTGGAGCGCTTACGAAGACATCGCCGAGTTCTTCAGCGTGGACGTGAAAACCATCGAC GGCAAACCCATCTATGGCCACATGGACTACGGCAAGAAAGACCCGTCGCTGGGCTGGCGCTTCACCGACGCCTGGCTCTC GATGGCCGGGACTGCCGACATCGGCGCGCCCAACGGCTTGCCGGTTGATGAGTGGGGCATCCGCGTGGCAGCAGACAAAT GCACACCGGTCGGCGCTTCGGTTTCACGCGGTGGTGCCACCAATTCGCCCGCAGCCGTTTATGCGCTCACCAAGTACGTC GACTGGATGAAGAAGTACGCGCCCAAGGAGGCCACCGGCATGACCTTCGGCGAAGCCGGGCCGGTGCCGGCGCAGGGCCA GATTGCCCAGCAGATCTTCTGGTACACCGCCTTCACGGCCGACATGACCAAGCCGGGCCTGCCGGTGGTGAATGCCGACG GCACGCCGAAATGGCGCATGGCACCCGGCCCGAACGGTCCGTACTGGAAGCAGGGCATGCAGAACGGCTACCAGGACGTC GGCTCGTGGACCTTCTTCACCAACCACGACGCGGACCGCACCGCCGCGGCCTGGCTGTACGCGCAGTTCATCACCTCGAA GACCACGTCGTTGAAGAAGACGATCGTGGGCCTGACGCCGATCCGCGAGTCCGACATCCAGAGCAAGGCCATGACCGACA TGGCGCCCAAGCTGGGCGGCCTGGTCGAGTTCTACCGCAGCCCGGCACGCGTGGCCTGGTCGCCCACCGGCACCAACGTG CCCGACTACCCCAAGCTCGCGCAGCTCTGGTGGAAGAACGTGGCCGAAGCCGTGACCGGTGAAAAGACACCACAAAAAGC CATGGACAACCTGGCCGAAGAAATGGACAACGTGATGGGTCGTTTGCAGCGTGCCGGCATGGCCAACTGTGCGCCCAAGC TCAATCCTAAAGGTGATCCGGCCAAATACCTGAGTGACAAGGCGGCACCGTGGGCCAAGCTGGCTAACGAGAAGCCAAAA GGTGAAACCATCAACTATGACAAGTTGCTGCAAGCCTGGAAAGACGGAAAAGCGCGTTAA
Upstream 100 bases:
>100_bases GTAGCGCTTCGGCGGCTAGAAAAAGGAATCCGGCTCATGTTTCCCCGGAGCCGAACAAGCCTTCATCAACGGGGAGTGAA CCAATGAGGAGACAAGAGTC
Downstream 100 bases:
>100_bases TCCGAAGGGCTTGGGGCGTCGATTTGCAGCCGACGATTCCCAAGTCCGACAGGCTCCCCCGGGTGTGGGGCACCCCGAGG CCCGGTTGCTGCTCGATGCA
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: Sugar ABC Transporter Periplasmic Protein; Sugar ABC Transporter; Twin-Arginine Translocation Pathway Signal; Abc-Type Sugar Transport System Periplasmic Component
Number of amino acids: Translated: 579; Mature: 579
Protein sequence:
>579_residues MKMRNTRRTALALAAACAMAGPGWADEAAARKWIDAEFQPSTLSKDKQQAEMKWFIDAAKKLQAKGVKEISVVSETITTH EYESKTLAKAFEEITGIKVKHDLIQEGDVVEKLQTSMQSGKSIYDGWVSDSDLIGTHYRYGKIMNLTDYMAGKGKDYTNP GLDLKDFIGTKFTTGPDGKLYQLPDQQFANLYWFRADLFARQDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFSVDVKTID GKPIYGHMDYGKKDPSLGWRFTDAWLSMAGTADIGAPNGLPVDEWGIRVAADKCTPVGASVSRGGATNSPAAVYALTKYV DWMKKYAPKEATGMTFGEAGPVPAQGQIAQQIFWYTAFTADMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDV GSWTFFTNHDADRTAAAWLYAQFITSKTTSLKKTIVGLTPIRESDIQSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNV PDYPKLAQLWWKNVAEAVTGEKTPQKAMDNLAEEMDNVMGRLQRAGMANCAPKLNPKGDPAKYLSDKAAPWAKLANEKPK GETINYDKLLQAWKDGKAR
Sequences:
>Translated_579_residues MKMRNTRRTALALAAACAMAGPGWADEAAARKWIDAEFQPSTLSKDKQQAEMKWFIDAAKKLQAKGVKEISVVSETITTH EYESKTLAKAFEEITGIKVKHDLIQEGDVVEKLQTSMQSGKSIYDGWVSDSDLIGTHYRYGKIMNLTDYMAGKGKDYTNP GLDLKDFIGTKFTTGPDGKLYQLPDQQFANLYWFRADLFARQDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFSVDVKTID GKPIYGHMDYGKKDPSLGWRFTDAWLSMAGTADIGAPNGLPVDEWGIRVAADKCTPVGASVSRGGATNSPAAVYALTKYV DWMKKYAPKEATGMTFGEAGPVPAQGQIAQQIFWYTAFTADMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDV GSWTFFTNHDADRTAAAWLYAQFITSKTTSLKKTIVGLTPIRESDIQSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNV PDYPKLAQLWWKNVAEAVTGEKTPQKAMDNLAEEMDNVMGRLQRAGMANCAPKLNPKGDPAKYLSDKAAPWAKLANEKPK GETINYDKLLQAWKDGKAR >Mature_579_residues MKMRNTRRTALALAAACAMAGPGWADEAAARKWIDAEFQPSTLSKDKQQAEMKWFIDAAKKLQAKGVKEISVVSETITTH EYESKTLAKAFEEITGIKVKHDLIQEGDVVEKLQTSMQSGKSIYDGWVSDSDLIGTHYRYGKIMNLTDYMAGKGKDYTNP GLDLKDFIGTKFTTGPDGKLYQLPDQQFANLYWFRADLFARQDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFSVDVKTID GKPIYGHMDYGKKDPSLGWRFTDAWLSMAGTADIGAPNGLPVDEWGIRVAADKCTPVGASVSRGGATNSPAAVYALTKYV DWMKKYAPKEATGMTFGEAGPVPAQGQIAQQIFWYTAFTADMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDV GSWTFFTNHDADRTAAAWLYAQFITSKTTSLKKTIVGLTPIRESDIQSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNV PDYPKLAQLWWKNVAEAVTGEKTPQKAMDNLAEEMDNVMGRLQRAGMANCAPKLNPKGDPAKYLSDKAAPWAKLANEKPK GETINYDKLLQAWKDGKAR
Specific function: Unknown
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64047; Mature: 64047
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMRNTRRTALALAAACAMAGPGWADEAAARKWIDAEFQPSTLSKDKQQAEMKWFIDAAK CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHH KLQAKGVKEISVVSETITTHEYESKTLAKAFEEITGIKVKHDLIQEGDVVEKLQTSMQSG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCC KSIYDGWVSDSDLIGTHYRYGKIMNLTDYMAGKGKDYTNPGLDLKDFIGTKFTTGPDGKL CHHHHCCCCCCCCCCCHHHCCEECCHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE YQLPDQQFANLYWFRADLFARQDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFSVDVKTID EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEEEC GKPIYGHMDYGKKDPSLGWRFTDAWLSMAGTADIGAPNGLPVDEWGIRVAADKCTPVGAS CCCEEEECCCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCC VSRGGATNSPAAVYALTKYVDWMKKYAPKEATGMTFGEAGPVPAQGQIAQQIFWYTAFTA CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH DMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDVGSWTFFTNHDADRTAAAWLY CCCCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHH AQFITSKTTSLKKTIVGLTPIRESDIQSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC PDYPKLAQLWWKNVAEAVTGEKTPQKAMDNLAEEMDNVMGRLQRAGMANCAPKLNPKGDP CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH AKYLSDKAAPWAKLANEKPKGETINYDKLLQAWKDGKAR HHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure MKMRNTRRTALALAAACAMAGPGWADEAAARKWIDAEFQPSTLSKDKQQAEMKWFIDAAK CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHH KLQAKGVKEISVVSETITTHEYESKTLAKAFEEITGIKVKHDLIQEGDVVEKLQTSMQSG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCC KSIYDGWVSDSDLIGTHYRYGKIMNLTDYMAGKGKDYTNPGLDLKDFIGTKFTTGPDGKL CHHHHCCCCCCCCCCCHHHCCEECCHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE YQLPDQQFANLYWFRADLFARQDLKDKFKAKYGYDLGVPLNWSAYEDIAEFFSVDVKTID EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEEEC GKPIYGHMDYGKKDPSLGWRFTDAWLSMAGTADIGAPNGLPVDEWGIRVAADKCTPVGAS CCCEEEECCCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCC VSRGGATNSPAAVYALTKYVDWMKKYAPKEATGMTFGEAGPVPAQGQIAQQIFWYTAFTA CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH DMTKPGLPVVNADGTPKWRMAPGPNGPYWKQGMQNGYQDVGSWTFFTNHDADRTAAAWLY CCCCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHH AQFITSKTTSLKKTIVGLTPIRESDIQSKAMTDMAPKLGGLVEFYRSPARVAWSPTGTNV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC PDYPKLAQLWWKNVAEAVTGEKTPQKAMDNLAEEMDNVMGRLQRAGMANCAPKLNPKGDP CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH AKYLSDKAAPWAKLANEKPKGETINYDKLLQAWKDGKAR HHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA