| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786364
Identifier: 91786364
GI number: 91786364
Start: 469686
End: 470417
Strand: Reverse
Name: 91786364
Synonym: Bpro_0454
Alternate gene names: NA
Gene position: 470417-469686 (Counterclockwise)
Preceding gene: 91786365
Following gene: 91786363
Centisome position: 9.05
GC content: 62.98
Gene sequence:
>732_bases ATGAGCACAAGCGCCGACCTGGTCACAGTCCTGAAGAAGGAACTCAAGGCCGCCCAGATGACCTATGCCGATCTGGCCCG CGCCCTCGGCATGGCCGAGTCCAGCGTCAAGCGCATGCTGGCCAAGGGCGACATGCCGCTGTCGCGCATCGATGCCATTT GCCGCGCCCTGAAACTGGACTTTTCCGAACTGGCCAGGCGCGTCGCGGATACCCAGCCGCTGCTGGCGGAACTCACGGAA GTGCAGGAAAAGGCGGTGGTGGCCGACAAGAAGCTTTTGCTGGCGGCGATTTGCGTGCTGTCACAGTGGACGCTGGAGCA GATGACGGACAGCTACCGCCTGTCGGAGGCCGAGTGCATCAAGTATCTGGCGCAGCTGGACCGCATCGGCATCATCGAAC TCAAGCCGATGAACCGCTACCGGCTCAAACTCGCCAAGACCTTCCGCTGGCGGCCGCACGGCCCGGTGATGGATTACTTC CGCGACAACGCCTTGCTCGATTACTTTTCAGGCGGCTTCGATGGCGCCGGTGAAGGCCTGTTGCTGGTGCACGGCTCCAT CAGCCGCAGCCTGGCACCCTCGTTTCTGGAACGCATGCAGCGCGTGGCGCAAGACTTTGCCCAGCAACACCAGGCCGACC AGAAACTGGCCGACAAGGACCGCGAGGGCTACACCTTGCTGCTGGCCATGCGGAGCTGGGAATTTGAGGCGTTTGCGGCG CTGCGGCGTTGA
Upstream 100 bases:
>100_bases CACAAGCTGAAAATCTTTCCAGGTATCGATACAAACTGAATTTCTACGACCAGAAGTATCGATAATCAATACCAGAGAGT TTTCCCAAGGAGCTTTTCCA
Downstream 100 bases:
>100_bases GGCGCTGAGTTGCCGGGCCATGGGTGCCGGCTGGGCCATGTCGCTGCCGGCGTTGACCACGTCCATGCCGACGATGACCT GGCCTTCGCACTCGGTGGCG
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Helix-Turn-Helix Domain Protein; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Protein Containing HTH Domain; Transcriptional Regulator XRE Family; HTH Domain-Containing Protein; XRE Family Transcription Regulator Protein
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MSTSADLVTVLKKELKAAQMTYADLARALGMAESSVKRMLAKGDMPLSRIDAICRALKLDFSELARRVADTQPLLAELTE VQEKAVVADKKLLLAAICVLSQWTLEQMTDSYRLSEAECIKYLAQLDRIGIIELKPMNRYRLKLAKTFRWRPHGPVMDYF RDNALLDYFSGGFDGAGEGLLLVHGSISRSLAPSFLERMQRVAQDFAQQHQADQKLADKDREGYTLLLAMRSWEFEAFAA LRR
Sequences:
>Translated_243_residues MSTSADLVTVLKKELKAAQMTYADLARALGMAESSVKRMLAKGDMPLSRIDAICRALKLDFSELARRVADTQPLLAELTE VQEKAVVADKKLLLAAICVLSQWTLEQMTDSYRLSEAECIKYLAQLDRIGIIELKPMNRYRLKLAKTFRWRPHGPVMDYF RDNALLDYFSGGFDGAGEGLLLVHGSISRSLAPSFLERMQRVAQDFAQQHQADQKLADKDREGYTLLLAMRSWEFEAFAA LRR >Mature_242_residues STSADLVTVLKKELKAAQMTYADLARALGMAESSVKRMLAKGDMPLSRIDAICRALKLDFSELARRVADTQPLLAELTEV QEKAVVADKKLLLAAICVLSQWTLEQMTDSYRLSEAECIKYLAQLDRIGIIELKPMNRYRLKLAKTFRWRPHGPVMDYFR DNALLDYFSGGFDGAGEGLLLVHGSISRSLAPSFLERMQRVAQDFAQQHQADQKLADKDREGYTLLLAMRSWEFEAFAAL RR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27481; Mature: 27350
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSADLVTVLKKELKAAQMTYADLARALGMAESSVKRMLAKGDMPLSRIDAICRALKLD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC FSELARRVADTQPLLAELTEVQEKAVVADKKLLLAAICVLSQWTLEQMTDSYRLSEAECI HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH KYLAQLDRIGIIELKPMNRYRLKLAKTFRWRPHGPVMDYFRDNALLDYFSGGFDGAGEGL HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCE LLVHGSISRSLAPSFLERMQRVAQDFAQQHQADQKLADKDREGYTLLLAMRSWEFEAFAA EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH LRR HCC >Mature Secondary Structure STSADLVTVLKKELKAAQMTYADLARALGMAESSVKRMLAKGDMPLSRIDAICRALKLD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC FSELARRVADTQPLLAELTEVQEKAVVADKKLLLAAICVLSQWTLEQMTDSYRLSEAECI HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH KYLAQLDRIGIIELKPMNRYRLKLAKTFRWRPHGPVMDYFRDNALLDYFSGGFDGAGEGL HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCE LLVHGSISRSLAPSFLERMQRVAQDFAQQHQADQKLADKDREGYTLLLAMRSWEFEAFAA EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH LRR HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA