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The map label for this gene is yodQ [H]

Identifier: 91786321

GI number: 91786321

Start: 423691

End: 425004

Strand: Direct

Name: yodQ [H]

Synonym: Bpro_0411

Alternate gene names: 91786321

Gene position: 423691-425004 (Clockwise)

Preceding gene: 91786320

Following gene: 91786322

Centisome position: 8.15

GC content: 66.06

Gene sequence:

>1314_bases
ATGAAAAATCTTCCGTCCTTCGATCATTCCCGCCTGCTCGCAACGATCGACCGGCTTGCGCCGTCCATGACGCAGACCCT
GAGTGCCTTCGTCGCCGCGCACAGCCCTTCCGGCGCGGAGCAGCCGGCCGCCGAGTTTCTGGAACGCAAGCTGACGGACC
TGGGGCTGGATGCCGAGCGCATCGTGCTCAACAGCAGCCTCATCGAGAGCCTGCCGCTGTTCTCCTGCCCCTGCGATCCC
GACAACGGACGTTACAACCTGCTGGCGCGCCACCTGCCGCGCAGCACCGGGGGCCGTTCGGTGCTGTTCAACGGCCACCT
CGACGTGGTGCCCACCGGGCCTGAATCGCTGTGGACCAAGCCACCTTACGTGCCGTGGGTGAAAGATGGCTGGTTGCACG
GCCGGGGTGCAGGCGACATGAAGGGTGGCCTCGTCTGCGCCCTGGTGGCCTACGAGGCCTTGCGTGAACTGGGCCTGCAG
CCCGCCGGCATCGTCGGCTTCAACGCCGTGCTGGACGAGGAAAACACCGGCAACGGCACACTGGCCACGGTGCACGCGCT
GCAAAACGCCCTGGCCAAGGCCAGGCTCACCGATTTCGATGCCGTGGTGATTCCGGAGCCCTTTGGCGAAACGCTGATGA
GCGCCCAGGTCGGCGTGTGCTGGCTTTTCATCGAGATCACCGGCAAGCCGGCGCATGTCGCCTACATGAACCAGGGCATC
AACCCGATCGAGGCCGGCATCGCCATCATGGCCGACCTGAAACAGCTGGAGTCCGAGTGGAACGCGCCTGCCCAACGACA
CCCGCTGTTTCGCGATGCGGCGCACCCGATCAACTTCAACCTGGGCCGCATCGAAGGCGGCGAGTGGAATTCGTCGGTGC
CCTGCACCTGTACGCTCGGCCTTCGCTTCAGTTTTTTTCCCGGCATGACGGCCGGGGAGGCCACGCGGCAGGTCACGCAG
CGCATACGCGCCACGGCCGCGCGGGTGAATCCGGCCTTGACGGTCGACATCCGTACCCGGGGACACTTCTCGCCGGGCTG
CGAATACGACCTCGACGCACCGGCGATGCAGGTGCTGGCCGAGGCACACCGCAAGGTCACCGGCGCACCACCTGCGCAGC
TGGCATGCACCGCGACCACCGATGGCCGCCACTTCGCGCTGATGACGGACATCCCCGTCACCGTGTACGGACCGGTGGCG
CGCAACATCCACGGCATCGATGAGGCCGTCTCGCTGGACAGCATGAAGCGCGTGGCAGCGACCATGGCGCAATTCATGGT
GGACTGGTGCGGCGTCGAACCGCTGGCAGCTTGA

Upstream 100 bases:

>100_bases
CCCTGCACGCGAGCCACCGCTGTAGGATGGGCACCATGCCGTGGGGAAGACTTCGCGGCCGCACCCTACGGCACGAAGTT
TGCAGTCACCCGGCACCGTC

Downstream 100 bases:

>100_bases
CCCCTTTCTTCAGGACATCCGCACCATGACCCACCCCTCGGCCGTAGCCACCGTCCAGATCGACAACGAACGGGTCAAGG
TCACCGAATGGCGTTTCGCA

Product: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase

Products: acetate; L-ornithine

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MKNLPSFDHSRLLATIDRLAPSMTQTLSAFVAAHSPSGAEQPAAEFLERKLTDLGLDAERIVLNSSLIESLPLFSCPCDP
DNGRYNLLARHLPRSTGGRSVLFNGHLDVVPTGPESLWTKPPYVPWVKDGWLHGRGAGDMKGGLVCALVAYEALRELGLQ
PAGIVGFNAVLDEENTGNGTLATVHALQNALAKARLTDFDAVVIPEPFGETLMSAQVGVCWLFIEITGKPAHVAYMNQGI
NPIEAGIAIMADLKQLESEWNAPAQRHPLFRDAAHPINFNLGRIEGGEWNSSVPCTCTLGLRFSFFPGMTAGEATRQVTQ
RIRATAARVNPALTVDIRTRGHFSPGCEYDLDAPAMQVLAEAHRKVTGAPPAQLACTATTDGRHFALMTDIPVTVYGPVA
RNIHGIDEAVSLDSMKRVAATMAQFMVDWCGVEPLAA

Sequences:

>Translated_437_residues
MKNLPSFDHSRLLATIDRLAPSMTQTLSAFVAAHSPSGAEQPAAEFLERKLTDLGLDAERIVLNSSLIESLPLFSCPCDP
DNGRYNLLARHLPRSTGGRSVLFNGHLDVVPTGPESLWTKPPYVPWVKDGWLHGRGAGDMKGGLVCALVAYEALRELGLQ
PAGIVGFNAVLDEENTGNGTLATVHALQNALAKARLTDFDAVVIPEPFGETLMSAQVGVCWLFIEITGKPAHVAYMNQGI
NPIEAGIAIMADLKQLESEWNAPAQRHPLFRDAAHPINFNLGRIEGGEWNSSVPCTCTLGLRFSFFPGMTAGEATRQVTQ
RIRATAARVNPALTVDIRTRGHFSPGCEYDLDAPAMQVLAEAHRKVTGAPPAQLACTATTDGRHFALMTDIPVTVYGPVA
RNIHGIDEAVSLDSMKRVAATMAQFMVDWCGVEPLAA
>Mature_437_residues
MKNLPSFDHSRLLATIDRLAPSMTQTLSAFVAAHSPSGAEQPAAEFLERKLTDLGLDAERIVLNSSLIESLPLFSCPCDP
DNGRYNLLARHLPRSTGGRSVLFNGHLDVVPTGPESLWTKPPYVPWVKDGWLHGRGAGDMKGGLVCALVAYEALRELGLQ
PAGIVGFNAVLDEENTGNGTLATVHALQNALAKARLTDFDAVVIPEPFGETLMSAQVGVCWLFIEITGKPAHVAYMNQGI
NPIEAGIAIMADLKQLESEWNAPAQRHPLFRDAAHPINFNLGRIEGGEWNSSVPCTCTLGLRFSFFPGMTAGEATRQVTQ
RIRATAARVNPALTVDIRTRGHFSPGCEYDLDAPAMQVLAEAHRKVTGAPPAQLACTATTDGRHFALMTDIPVTVYGPVA
RNIHGIDEAVSLDSMKRVAATMAQFMVDWCGVEPLAA

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fifth step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1788816, Length=337, Percent_Identity=28.1899109792285, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790395, Length=353, Percent_Identity=27.7620396600567, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16

Molecular weight: Translated: 47047; Mature: 47047

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLPSFDHSRLLATIDRLAPSMTQTLSAFVAAHSPSGAEQPAAEFLERKLTDLGLDAER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHH
IVLNSSLIESLPLFSCPCDPDNGRYNLLARHLPRSTGGRSVLFNGHLDVVPTGPESLWTK
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCEEEEECCCHHHCCC
PPYVPWVKDGWLHGRGAGDMKGGLVCALVAYEALRELGLQPAGIVGFNAVLDEENTGNGT
CCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCH
LATVHALQNALAKARLTDFDAVVIPEPFGETLMSAQVGVCWLFIEITGKPAHVAYMNQGI
HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCC
NPIEAGIAIMADLKQLESEWNAPAQRHPLFRDAAHPINFNLGRIEGGEWNSSVPCTCTLG
CHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCCCCEEEEECCCCCCCCCCEEEEEC
LRFSFFPGMTAGEATRQVTQRIRATAARVNPALTVDIRTRGHFSPGCEYDLDAPAMQVLA
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH
EAHRKVTGAPPAQLACTATTDGRHFALMTDIPVTVYGPVARNIHGIDEAVSLDSMKRVAA
HHHHHCCCCCCCCEEEEEECCCCEEEEEECCCEEEECHHHHCCCCCHHHHHHHHHHHHHH
TMAQFMVDWCGVEPLAA
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKNLPSFDHSRLLATIDRLAPSMTQTLSAFVAAHSPSGAEQPAAEFLERKLTDLGLDAER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHH
IVLNSSLIESLPLFSCPCDPDNGRYNLLARHLPRSTGGRSVLFNGHLDVVPTGPESLWTK
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCEEEEECCCHHHCCC
PPYVPWVKDGWLHGRGAGDMKGGLVCALVAYEALRELGLQPAGIVGFNAVLDEENTGNGT
CCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCH
LATVHALQNALAKARLTDFDAVVIPEPFGETLMSAQVGVCWLFIEITGKPAHVAYMNQGI
HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCC
NPIEAGIAIMADLKQLESEWNAPAQRHPLFRDAAHPINFNLGRIEGGEWNSSVPCTCTLG
CHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCCCCEEEEECCCCCCCCCCEEEEEC
LRFSFFPGMTAGEATRQVTQRIRATAARVNPALTVDIRTRGHFSPGCEYDLDAPAMQVLA
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH
EAHRKVTGAPPAQLACTATTDGRHFALMTDIPVTVYGPVARNIHGIDEAVSLDSMKRVAA
HHHHHCCCCCCCCEEEEEECCCCEEEEEECCCEEEECHHHHCCCCCHHHHHHHHHHHHHH
TMAQFMVDWCGVEPLAA
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-acetyl-L-ornithine; H2O

Specific reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]