| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786274
Identifier: 91786274
GI number: 91786274
Start: 379293
End: 380465
Strand: Direct
Name: 91786274
Synonym: Bpro_0364
Alternate gene names: NA
Gene position: 379293-380465 (Clockwise)
Preceding gene: 91786273
Following gene: 91786275
Centisome position: 7.29
GC content: 52.94
Gene sequence:
>1173_bases ATGACTTCAAGTGTGCCGAAACAAGGCCTCCGAAAGCCAAACCTCATTTTTACGTTGAATAAGAGGGTTACGGCAACTTT CGTCCTTGTCGCGCTGTCTTTGGCCAATGTAGCGCATGCGGCGGAGCTGGTGGTAGGTCAGGTGGGGCCCTTCGTTGGGC TTCAAGCGCCACAAGCTAAAGCCTATGCCGCCGGAATGAATCTGGTGTTTGATGCGGCAAACAGGATCCGCGGCGCCACA AATACTTTTCGCTTGGTTCGCCGCGATGACGGCGGACGTGCTGAGGACACCGTGTCTGTCACTCGGAAGCTGATCGAGGA TGAAAAGCCGATTATTTTGGCCGGATTTTTTGGTAGCAAGAACCTGGCATTGCTGTCGGGTTCTGGATTGCTGGAGAGAG AGAAGATAGCGCTGGTGGGCTACCGCACCGCTGAACTGCAGATTGATGACCCCCAATTCTTTAGCGTGCGGGCGGGTATA TCAGAGGAGATAGCCCGGATTACGCAGCATCTCTCCACGATAGGTATCCGCGATCTCGGTATCTTTTATGAAGAAGGCGC GGGTGCTACGCGCTTAGTGGCAGTTGCTGACGAGTTGGCAAAAAAAACCGGTGTGGCATTCGCGGTCCGTGCATCATATT CTCCAGGTACAGCTCGGGTGACTTCCGCTGTAGAGTTGTTCTTGAAACGCCCTCCGCAGGCCATCTTACTAGTCACTTCG AGCGCTGCTGCAGCAGGATTTATTGAGCAATACAGGACAGCAGGTGGTGCTGCAAAAATCTTCTCGCATTCGGGCGTCGA TATTGAACAGCTGAATCGCCAGCTTACAGAAGAGCAGCTTCAAGGCGTGGCAATAGCGCAGGTTACGCCTAGCCCTTACA AAAACTCAAGCAGCCTCAGCAAAGAATTTGCAGATGCTGTAGCTGCGTCAGCAGACAAAGGCTTGCCCGTCAGTTACGCA ATGATGGAAGGGTACATTGCGGGGAAAGTGATCGTTGAAGCCGTTCGTCGCCAAGGCTCCAAAGTTTCCAGGCAAACAAT GATGGCAACATTGGATGCGCTCGCGGCATTCGATCTTGGGGGCTATGCAATTGGCTTTAAACCGGGCTCTCACACTGGTT CGAAATTTGTGGAGCTATCCATCGTCACCAGCAGTGGTCGCATTCGTCAATAG
Upstream 100 bases:
>100_bases CTCGAGCACACCACAATATTTTGATAGCTTTATTCGTTCGGAGATTGTGCGTTGGTCCAAGATCGTGAAGCAGTCCGGCG CAAAACCGGAATAAGCTGTC
Downstream 100 bases:
>100_bases CGTTAGCAATCTCAATGTGAATGGCAAATGGCTATCTATTCCTTAAACGGTGTCGCACCTCAAATCAGCGAGTCTGCGTG GGTCGAAAAAAGCGCGACAG
Product: putative substrate-binding periplasmic (PBP) ABC transporter protein
Products: NA
Alternate protein names: Abc-Type Branched-Chain Amino Acid Transport Systems; Branched-Chain Amino Acid ABC Transporter; Lipoprotein; Signal Peptide; ABC Branched-Chain Amino Acid Transporter
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MTSSVPKQGLRKPNLIFTLNKRVTATFVLVALSLANVAHAAELVVGQVGPFVGLQAPQAKAYAAGMNLVFDAANRIRGAT NTFRLVRRDDGGRAEDTVSVTRKLIEDEKPIILAGFFGSKNLALLSGSGLLEREKIALVGYRTAELQIDDPQFFSVRAGI SEEIARITQHLSTIGIRDLGIFYEEGAGATRLVAVADELAKKTGVAFAVRASYSPGTARVTSAVELFLKRPPQAILLVTS SAAAAGFIEQYRTAGGAAKIFSHSGVDIEQLNRQLTEEQLQGVAIAQVTPSPYKNSSSLSKEFADAVAASADKGLPVSYA MMEGYIAGKVIVEAVRRQGSKVSRQTMMATLDALAAFDLGGYAIGFKPGSHTGSKFVELSIVTSSGRIRQ
Sequences:
>Translated_390_residues MTSSVPKQGLRKPNLIFTLNKRVTATFVLVALSLANVAHAAELVVGQVGPFVGLQAPQAKAYAAGMNLVFDAANRIRGAT NTFRLVRRDDGGRAEDTVSVTRKLIEDEKPIILAGFFGSKNLALLSGSGLLEREKIALVGYRTAELQIDDPQFFSVRAGI SEEIARITQHLSTIGIRDLGIFYEEGAGATRLVAVADELAKKTGVAFAVRASYSPGTARVTSAVELFLKRPPQAILLVTS SAAAAGFIEQYRTAGGAAKIFSHSGVDIEQLNRQLTEEQLQGVAIAQVTPSPYKNSSSLSKEFADAVAASADKGLPVSYA MMEGYIAGKVIVEAVRRQGSKVSRQTMMATLDALAAFDLGGYAIGFKPGSHTGSKFVELSIVTSSGRIRQ >Mature_389_residues TSSVPKQGLRKPNLIFTLNKRVTATFVLVALSLANVAHAAELVVGQVGPFVGLQAPQAKAYAAGMNLVFDAANRIRGATN TFRLVRRDDGGRAEDTVSVTRKLIEDEKPIILAGFFGSKNLALLSGSGLLEREKIALVGYRTAELQIDDPQFFSVRAGIS EEIARITQHLSTIGIRDLGIFYEEGAGATRLVAVADELAKKTGVAFAVRASYSPGTARVTSAVELFLKRPPQAILLVTSS AAAAGFIEQYRTAGGAAKIFSHSGVDIEQLNRQLTEEQLQGVAIAQVTPSPYKNSSSLSKEFADAVAASADKGLPVSYAM MEGYIAGKVIVEAVRRQGSKVSRQTMMATLDALAAFDLGGYAIGFKPGSHTGSKFVELSIVTSSGRIRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41410; Mature: 41279
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSVPKQGLRKPNLIFTLNKRVTATFVLVALSLANVAHAAELVVGQVGPFVGLQAPQAK CCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH AYAAGMNLVFDAANRIRGATNTFRLVRRDDGGRAEDTVSVTRKLIEDEKPIILAGFFGSK HHHHCCHHEEHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC NLALLSGSGLLEREKIALVGYRTAELQIDDPQFFSVRAGISEEIARITQHLSTIGIRDLG CEEEEECCCCCCCCEEEEEEEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCHHHHC IFYEEGAGATRLVAVADELAKKTGVAFAVRASYSPGTARVTSAVELFLKRPPQAILLVTS EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEC SAAAAGFIEQYRTAGGAAKIFSHSGVDIEQLNRQLTEEQLQGVAIAQVTPSPYKNSSSLS CHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHH KEFADAVAASADKGLPVSYAMMEGYIAGKVIVEAVRRQGSKVSRQTMMATLDALAAFDLG HHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC GYAIGFKPGSHTGSKFVELSIVTSSGRIRQ CEEEEECCCCCCCCEEEEEEEEECCCCCCC >Mature Secondary Structure TSSVPKQGLRKPNLIFTLNKRVTATFVLVALSLANVAHAAELVVGQVGPFVGLQAPQAK CCCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH AYAAGMNLVFDAANRIRGATNTFRLVRRDDGGRAEDTVSVTRKLIEDEKPIILAGFFGSK HHHHCCHHEEHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC NLALLSGSGLLEREKIALVGYRTAELQIDDPQFFSVRAGISEEIARITQHLSTIGIRDLG CEEEEECCCCCCCCEEEEEEEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCHHHHC IFYEEGAGATRLVAVADELAKKTGVAFAVRASYSPGTARVTSAVELFLKRPPQAILLVTS EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEC SAAAAGFIEQYRTAGGAAKIFSHSGVDIEQLNRQLTEEQLQGVAIAQVTPSPYKNSSSLS CHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHH KEFADAVAASADKGLPVSYAMMEGYIAGKVIVEAVRRQGSKVSRQTMMATLDALAAFDLG HHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC GYAIGFKPGSHTGSKFVELSIVTSSGRIRQ CEEEEECCCCCCCCEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA