BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is ygfF [H]

Identifier: 91786150

GI number: 91786150

Start: 262271

End: 263017

Strand: Reverse

Name: ygfF [H]

Synonym: Bpro_0239

Alternate gene names: 91786150

Gene position: 263017-262271 (Counterclockwise)

Preceding gene: 91786155

Following gene: 91786149

Centisome position: 5.06

GC content: 67.6

Gene sequence:

>747_bases
TTGTCCAAAGTTGTTCTGATTACCGGAGGCTCGCGCGGCATTGGTGCGGCGTCCGCCCTGCTGGCGGCCCGGCAGGGCTA
TGCGGTGGCCGTCAATTACGCCAGCAACTCGGCGGCGGCTGACGAAGTGGTACGGCAGATCCGTGAGGCCGGGGGCCAGG
CCCTCGCCGTGCAGGCCGATGTGGCGAAGGAGCGCGAGGTGCTGGCCATGTTCGAGACGGTCGATGCCCAACTCGGGCGC
TTGAGCGCGCTGGTCAACAACGCGGGCGTGGTGGACCAGACCACGCGGGTCGACGGCATCACGCTGGAACGCCTGCAGCG
CATGTTTGAAATCAATGTGTTCGGCTCTTTCCTGTGTGCCCGCGAAGCGGTCAAACGCATGAGCACGCGGTATGGCGGCA
GCGGCGGCAGCATCGTCAATGTGTCCAGTGCCGCAGCCCGGCTCGGCTCGCCGGGCCAGTATGTGGACTATGCGGCAGCC
AAGGGCGCCATCGATACCTTCACCCTCGGCCTGGCGAAGGAAGTCGCCACTGAAGGCATTCGGGTCAACGCGGTGCGACC
GGGCATCATCGAGACGGACATCCACGCCTCGGGCGGGCTGCCCAACCGCGCGCGCGACGTGGCACCCCAGGTGCCGATGC
AGCGTGCCGGCACAGCCCGGGAGGTGGCCGAGGCCATCGTCTGGCTGCTGGGCGACCAGGCCAGCTACACCACGGGCGCC
TTGCTTGACGTCACCGGCGGCAGATAG

Upstream 100 bases:

>100_bases
CCGGTTGAAAGTGCGCGCCATCCGGCACCAATTGAAGTACATTGATCGGCTTCAAGCCCGGTTTGTACACGGGATTGCCC
ATTTTTGCAGGAGACAGGCC

Downstream 100 bases:

>100_bases
TGCCCCCACGTTCGCTCACTGCGTGTAGCTCTCTGCCCCCCGAGGGGGCGCTGCGCCTGCGGCCCGGCGAAGCCGGTTCC
GCGGCTCCGGCTGGATTTTT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSKVVLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAVQADVAKEREVLAMFETVDAQLGR
LSALVNNAGVVDQTTRVDGITLERLQRMFEINVFGSFLCAREAVKRMSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAA
KGAIDTFTLGLAKEVATEGIRVNAVRPGIIETDIHASGGLPNRARDVAPQVPMQRAGTAREVAEAIVWLLGDQASYTTGA
LLDVTGGR

Sequences:

>Translated_248_residues
MSKVVLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAVQADVAKEREVLAMFETVDAQLGR
LSALVNNAGVVDQTTRVDGITLERLQRMFEINVFGSFLCAREAVKRMSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAA
KGAIDTFTLGLAKEVATEGIRVNAVRPGIIETDIHASGGLPNRARDVAPQVPMQRAGTAREVAEAIVWLLGDQASYTTGA
LLDVTGGR
>Mature_247_residues
SKVVLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAVQADVAKEREVLAMFETVDAQLGRL
SALVNNAGVVDQTTRVDGITLERLQRMFEINVFGSFLCAREAVKRMSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAAK
GAIDTFTLGLAKEVATEGIRVNAVRPGIIETDIHASGGLPNRARDVAPQVPMQRAGTAREVAEAIVWLLGDQASYTTGAL
LDVTGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=254, Percent_Identity=39.7637795275591, Blast_Score=141, Evalue=5e-34,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=29.6747967479675, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI4758504, Length=233, Percent_Identity=32.618025751073, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=31.0483870967742, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=30.7339449541284, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=28.8537549407115, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=28.9156626506024, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=33.0049261083744, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=29.9595141700405, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4504505, Length=257, Percent_Identity=31.5175097276265, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI40254986, Length=204, Percent_Identity=30.8823529411765, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI210032110, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40807363, Length=235, Percent_Identity=28.5106382978723, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI209862901, Length=204, Percent_Identity=30.8823529411765, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI19923983, Length=204, Percent_Identity=30.8823529411765, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI83715985, Length=185, Percent_Identity=31.8918918918919, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=28.6852589641434, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI4504503, Length=214, Percent_Identity=26.6355140186916, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI224922801, Length=184, Percent_Identity=31.5217391304348, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=59.1836734693878, Blast_Score=297, Evalue=5e-82,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=34.0080971659919, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=36.6935483870968, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=34.5528455284553, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.4285714285714, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=30.2681992337165, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=33.8709677419355, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=27.5303643724696, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=28.5140562248996, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=31.6205533596838, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=30.3149606299213, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=26.1044176706827, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787891, Length=245, Percent_Identity=28.1632653061224, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=24.8995983935743, Blast_Score=69, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=33.984375, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=35.4581673306773, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=33.8775510204082, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=31.2741312741313, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=33.59375, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=32.4324324324324, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=30.7692307692308, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=32.4324324324324, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=30.7692307692308, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=252, Percent_Identity=32.5396825396825, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=30.3846153846154, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=205, Percent_Identity=33.6585365853659, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=31.0344827586207, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=30.2919708029197, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=28.3524904214559, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=31.6793893129771, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.9803921568627, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=28.2527881040892, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=28.6290322580645, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=248, Percent_Identity=30.241935483871, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=29.277566539924, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.5275590551181, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=30.5660377358491, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=215, Percent_Identity=31.6279069767442, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=30.9433962264151, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=25, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=199, Percent_Identity=31.6582914572864, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI72001658, Length=212, Percent_Identity=27.8301886792453, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=254, Percent_Identity=28.740157480315, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=210, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=33.160621761658, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=31.4720812182741, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6324126, Length=146, Percent_Identity=34.2465753424658, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=199, Percent_Identity=26.1306532663317, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=38.671875, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=35.9375, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=35.3174603174603, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=35.546875, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=34.2629482071713, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI17737361, Length=233, Percent_Identity=33.4763948497854, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=29.4573643410853, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644337, Length=212, Percent_Identity=31.1320754716981, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21357673, Length=202, Percent_Identity=31.1881188118812, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24643142, Length=264, Percent_Identity=27.6515151515151, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=28.8659793814433, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24663911, Length=248, Percent_Identity=30.6451612903226, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364494, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=34.3434343434343, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24641388, Length=239, Percent_Identity=29.2887029288703, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584748, Length=211, Percent_Identity=29.8578199052133, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI161076933, Length=211, Percent_Identity=29.8578199052133, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641232, Length=200, Percent_Identity=29.5, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648693, Length=227, Percent_Identity=27.7533039647577, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21355889, Length=227, Percent_Identity=27.7533039647577, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281364892, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=32.0197044334975, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25751; Mature: 25619

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVVLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAVQAD
CCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEHH
VAKEREVLAMFETVDAQLGRLSALVNNAGVVDQTTRVDGITLERLQRMFEINVFGSFLCA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
REAVKRMSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAAKGAIDTFTLGLAKEVATEGI
HHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCE
RVNAVRPGIIETDIHASGGLPNRARDVAPQVPMQRAGTAREVAEAIVWLLGDQASYTTGA
EEEEECCCEEEECCCCCCCCCCHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCE
LLDVTGGR
EEEECCCC
>Mature Secondary Structure 
SKVVLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAVQAD
CEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEHH
VAKEREVLAMFETVDAQLGRLSALVNNAGVVDQTTRVDGITLERLQRMFEINVFGSFLCA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
REAVKRMSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAAKGAIDTFTLGLAKEVATEGI
HHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCE
RVNAVRPGIIETDIHASGGLPNRARDVAPQVPMQRAGTAREVAEAIVWLLGDQASYTTGA
EEEEECCCEEEECCCCCCCCCCHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCE
LLDVTGGR
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]