Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is ycfJ [C]

Identifier: 91786086

GI number: 91786086

Start: 191691

End: 192515

Strand: Direct

Name: ycfJ [C]

Synonym: Bpro_0175

Alternate gene names: 91786086

Gene position: 191691-192515 (Clockwise)

Preceding gene: 91786085

Following gene: 91786087

Centisome position: 3.69

GC content: 71.52

Gene sequence:

>825_bases
ATGAACACCTCCGTCGACAACCTCCAGCCGGGCCAGCAAGCTGCCTCGTCTGGCAGCAAGCCCCTGTGGGCGGCGATCGG
CATACTCGGTGTGGCGGTGCTGGCCATGGGCGCCACCATGCTGTACAACCAGCGTGCCCAGCCCCCGGCTGCCAGCGTGG
CGGCTGTAACGATGCCCCAGGCCCCGGCGGCACCGCAGCTGGCCGGGCCGGCGCCTTCTGCCAACGCAGTCGACGACCTG
ATTGAAAAGCCGGTGGCCACCCCGGCCAAGCCCGCCGCCGCGCCCGCGCCGGCCAAAAAAGTGGTCAAACCCCAACCCAG
GCCTGTGCCGACACAGGCGCCGAGCTACTCGGGCGTTTCACCCGCGCCCTCTGCCGTACCGGCCCCGGCCATGGCGGCGG
CACCGACGGTGTGCGCCGTGTGTGGTTCCGTTGAATCGGTCACGCCGGTGGAGCGTTCCGCCAAACCAGCCGGCCCCGGC
GTGGGCGCTGTGGCTGGCGGGGTGCTGGGTGCGGTGCTGGGCAACCAGGTGGGCCATGGCGGCGGCCGCACCGCCGCCAC
CATCCTGGGCGCGGTCGGCGGCGGTTTTGCCGGCAACGCGATCGAAGGGCAGATTCGCAAGGAAACGGTTTACCAGGTGG
GTGTGCGCATGGAAGACGGTTCGCGCCGCACCGTGGAAGTGGCGCGCGCGCCCGCAGTGGGCAGCCGCGTGACCGTGGAC
GGCGCCGTCCTGCGCACCAGCGATGGTGCAACCTACGGCCCCAAGCCGCCACCGGCGCCTGTGGCCGCACAGCCTGCACC
TGCACCGGAATACCAGGGGCGTTGA

Upstream 100 bases:

>100_bases
GCTGTCTCGGACGTTCATGAGTGAACGGCGAAGGGCGCCAGCCTGCATTCATGCAGCTTGGTGCCGTCCCGGGACTTTTT
AACAAAAGAAGGGATACCCC

Downstream 100 bases:

>100_bases
TCAAGCCCGACAGGCTCCTGGACAGGGCATGACAGCGAAATCGGTGGCAATCCTGGCCATCTGACAGACCTGCAAGCCAT
CCCCGGCGCCAGGCGAAAGC

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQAPAAPQLAGPAPSANAVDDL
IEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVSPAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPG
VGAVAGGVLGAVLGNQVGHGGGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD
GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR

Sequences:

>Translated_274_residues
MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQAPAAPQLAGPAPSANAVDDL
IEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVSPAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPG
VGAVAGGVLGAVLGNQVGHGGGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD
GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR
>Mature_274_residues
MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQAPAAPQLAGPAPSANAVDDL
IEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVSPAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPG
VGAVAGGVLGAVLGNQVGHGGGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD
GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26763; Mature: 26763

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQ
CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
APAAPQLAGPAPSANAVDDLIEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVS
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
PAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPGVGAVAGGVLGAVLGNQVGHG
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
GGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCEEEEHHCCCCCCEEEEC
GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQ
CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
APAAPQLAGPAPSANAVDDLIEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVS
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
PAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPGVGAVAGGVLGAVLGNQVGHG
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
GGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCEEEEHHCCCCCCEEEEC
GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA