| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ycfJ [C]
Identifier: 91786086
GI number: 91786086
Start: 191691
End: 192515
Strand: Direct
Name: ycfJ [C]
Synonym: Bpro_0175
Alternate gene names: 91786086
Gene position: 191691-192515 (Clockwise)
Preceding gene: 91786085
Following gene: 91786087
Centisome position: 3.69
GC content: 71.52
Gene sequence:
>825_bases ATGAACACCTCCGTCGACAACCTCCAGCCGGGCCAGCAAGCTGCCTCGTCTGGCAGCAAGCCCCTGTGGGCGGCGATCGG CATACTCGGTGTGGCGGTGCTGGCCATGGGCGCCACCATGCTGTACAACCAGCGTGCCCAGCCCCCGGCTGCCAGCGTGG CGGCTGTAACGATGCCCCAGGCCCCGGCGGCACCGCAGCTGGCCGGGCCGGCGCCTTCTGCCAACGCAGTCGACGACCTG ATTGAAAAGCCGGTGGCCACCCCGGCCAAGCCCGCCGCCGCGCCCGCGCCGGCCAAAAAAGTGGTCAAACCCCAACCCAG GCCTGTGCCGACACAGGCGCCGAGCTACTCGGGCGTTTCACCCGCGCCCTCTGCCGTACCGGCCCCGGCCATGGCGGCGG CACCGACGGTGTGCGCCGTGTGTGGTTCCGTTGAATCGGTCACGCCGGTGGAGCGTTCCGCCAAACCAGCCGGCCCCGGC GTGGGCGCTGTGGCTGGCGGGGTGCTGGGTGCGGTGCTGGGCAACCAGGTGGGCCATGGCGGCGGCCGCACCGCCGCCAC CATCCTGGGCGCGGTCGGCGGCGGTTTTGCCGGCAACGCGATCGAAGGGCAGATTCGCAAGGAAACGGTTTACCAGGTGG GTGTGCGCATGGAAGACGGTTCGCGCCGCACCGTGGAAGTGGCGCGCGCGCCCGCAGTGGGCAGCCGCGTGACCGTGGAC GGCGCCGTCCTGCGCACCAGCGATGGTGCAACCTACGGCCCCAAGCCGCCACCGGCGCCTGTGGCCGCACAGCCTGCACC TGCACCGGAATACCAGGGGCGTTGA
Upstream 100 bases:
>100_bases GCTGTCTCGGACGTTCATGAGTGAACGGCGAAGGGCGCCAGCCTGCATTCATGCAGCTTGGTGCCGTCCCGGGACTTTTT AACAAAAGAAGGGATACCCC
Downstream 100 bases:
>100_bases TCAAGCCCGACAGGCTCCTGGACAGGGCATGACAGCGAAATCGGTGGCAATCCTGGCCATCTGACAGACCTGCAAGCCAT CCCCGGCGCCAGGCGAAAGC
Product: 17 kDa surface antigen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQAPAAPQLAGPAPSANAVDDL IEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVSPAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPG VGAVAGGVLGAVLGNQVGHGGGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR
Sequences:
>Translated_274_residues MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQAPAAPQLAGPAPSANAVDDL IEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVSPAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPG VGAVAGGVLGAVLGNQVGHGGGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR >Mature_274_residues MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQAPAAPQLAGPAPSANAVDDL IEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVSPAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPG VGAVAGGVLGAVLGNQVGHGGGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26763; Mature: 26763
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQ CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC APAAPQLAGPAPSANAVDDLIEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVS CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC PAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPGVGAVAGGVLGAVLGNQVGHG CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC GGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCEEEEHHCCCCCCEEEEC GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNTSVDNLQPGQQAASSGSKPLWAAIGILGVAVLAMGATMLYNQRAQPPAASVAAVTMPQ CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC APAAPQLAGPAPSANAVDDLIEKPVATPAKPAAAPAPAKKVVKPQPRPVPTQAPSYSGVS CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC PAPSAVPAPAMAAAPTVCAVCGSVESVTPVERSAKPAGPGVGAVAGGVLGAVLGNQVGHG CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC GGRTAATILGAVGGGFAGNAIEGQIRKETVYQVGVRMEDGSRRTVEVARAPAVGSRVTVD CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCEEEEHHCCCCCCEEEEC GAVLRTSDGATYGPKPPPAPVAAQPAPAPEYQGR CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA