| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiD [H]
Identifier: 91786048
GI number: 91786048
Start: 143077
End: 143997
Strand: Reverse
Name: gsiD [H]
Synonym: Bpro_0137
Alternate gene names: 91786048
Gene position: 143997-143077 (Counterclockwise)
Preceding gene: 91786049
Following gene: 91786047
Centisome position: 2.77
GC content: 64.6
Gene sequence:
>921_bases ATGACACAGACCATCGTCAACGAAGCCGTCGTCGCCATCGCGGCGACACCCGTGGCCACGCAAAACACCCGCGTGCGCAC GCCCTGGACTGAGTTCTGGCGCAAGTTCAAGAAGCAGCACGTGGCGATGGCGGCACTGGCCTTCGTTCTGCTGCTGGTGC TGCTGGCCCTGCTCGCGCCGGTCATCGTTCCCTACGACGCCGAAAACTTTTTCGACTACGACAAGCTCAACGCCGGACCG TCGTGGCAGCACTGGCTGGGCGTTGACCCGCTGGGCCGGGACATCTTCAGCCGCATTCTGGTGGGCGCGCGTATTTCGCT GGCCGCAGGCTTTGCGTCGGTCGCCATCGGTGGCCTGATCGGCACCGCACTGGGTTTGCTGGCCGGCTATTACGAGGGCT GGTGGGACCGTATCGTGATGCGGATTTCCGACGTGCTGTTCGCCTTTCCCGGCATCCTGCTGGCGCTCGGTGTGGTCGCC ATCCTGGGCAGCAGCATGGTCAACGTGGTGGTGGCCGTGTCGGTGTTCAGCGTGCCGGCCTTTGCGCGGCTGGTGCGCGG CAACACGCTGGTGCTCAAGCAGATGACCTATGTCGAGGCGGTGCGCAGCATAGGCGCTTCGGACTGGACCATCATCATGC GCCACATCCTGCCCGGCACCATCTCGTCCATCGTCGTCTACTTCACGATGCGCCTGGGCACTTCCATCATCACTGCGGCC AGCCTGTCCTTCCTCGGCATGGGCGCTCAGCCGCCCACGCCCGAATGGGGCGCCATGCTCAATGAAGCGCGCGCCGACAT GGTCAACGCGCCGCACGTGGCGCTGTTTCCCAGCCTGGCGATTTTCCTGACGGTGCTGGCCTTCAACCTGCTGGGTGACG GCCTGCGCGATGCGCTGGACCCCAAAATTGACCGCCAGTAG
Upstream 100 bases:
>100_bases CTGCTGTTTTCGCTGGAATTCATCCTGATCAACCTGGTGGTGGACGTGCTCTACGGTTTCATCAACCCCACCATTCGCTA CAAATGAGAACAAGCCAGCC
Downstream 100 bases:
>100_bases GAAAGCCTTTTCGTGATGCTTCGCCATCTGCTGCCCCACATCGGCAGCCTGCCGCCAGGGCCGCGCAATGCCATCACCGA CGTGGCCGGTGTCACCGTGG
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MTQTIVNEAVVAIAATPVATQNTRVRTPWTEFWRKFKKQHVAMAALAFVLLLVLLALLAPVIVPYDAENFFDYDKLNAGP SWQHWLGVDPLGRDIFSRILVGARISLAAGFASVAIGGLIGTALGLLAGYYEGWWDRIVMRISDVLFAFPGILLALGVVA ILGSSMVNVVVAVSVFSVPAFARLVRGNTLVLKQMTYVEAVRSIGASDWTIIMRHILPGTISSIVVYFTMRLGTSIITAA SLSFLGMGAQPPTPEWGAMLNEARADMVNAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIDRQ
Sequences:
>Translated_306_residues MTQTIVNEAVVAIAATPVATQNTRVRTPWTEFWRKFKKQHVAMAALAFVLLLVLLALLAPVIVPYDAENFFDYDKLNAGP SWQHWLGVDPLGRDIFSRILVGARISLAAGFASVAIGGLIGTALGLLAGYYEGWWDRIVMRISDVLFAFPGILLALGVVA ILGSSMVNVVVAVSVFSVPAFARLVRGNTLVLKQMTYVEAVRSIGASDWTIIMRHILPGTISSIVVYFTMRLGTSIITAA SLSFLGMGAQPPTPEWGAMLNEARADMVNAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIDRQ >Mature_305_residues TQTIVNEAVVAIAATPVATQNTRVRTPWTEFWRKFKKQHVAMAALAFVLLLVLLALLAPVIVPYDAENFFDYDKLNAGPS WQHWLGVDPLGRDIFSRILVGARISLAAGFASVAIGGLIGTALGLLAGYYEGWWDRIVMRISDVLFAFPGILLALGVVAI LGSSMVNVVVAVSVFSVPAFARLVRGNTLVLKQMTYVEAVRSIGASDWTIIMRHILPGTISSIVVYFTMRLGTSIITAAS LSFLGMGAQPPTPEWGAMLNEARADMVNAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIDRQ
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1173
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=281, Percent_Identity=76.8683274021352, Blast_Score=453, Evalue=1e-129, Organism=Escherichia coli, GI1787760, Length=267, Percent_Identity=39.7003745318352, Blast_Score=211, Evalue=5e-56, Organism=Escherichia coli, GI1789964, Length=286, Percent_Identity=44.0559440559441, Blast_Score=192, Evalue=3e-50, Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=37.7593360995851, Blast_Score=167, Evalue=1e-42, Organism=Escherichia coli, GI1787498, Length=282, Percent_Identity=35.8156028368794, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1787549, Length=292, Percent_Identity=34.5890410958904, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1788505, Length=248, Percent_Identity=31.0483870967742, Blast_Score=113, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 33095; Mature: 32964
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTIVNEAVVAIAATPVATQNTRVRTPWTEFWRKFKKQHVAMAALAFVLLLVLLALLAP CCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIVPYDAENFFDYDKLNAGPSWQHWLGVDPLGRDIFSRILVGARISLAAGFASVAIGGLI HHCCCCCHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTALGLLAGYYEGWWDRIVMRISDVLFAFPGILLALGVVAILGSSMVNVVVAVSVFSVPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FARLVRGNTLVLKQMTYVEAVRSIGASDWTIIMRHILPGTISSIVVYFTMRLGTSIITAA HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SLSFLGMGAQPPTPEWGAMLNEARADMVNAPHVALFPSLAIFLTVLAFNLLGDGLRDALD HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PKIDRQ CCCCCC >Mature Secondary Structure TQTIVNEAVVAIAATPVATQNTRVRTPWTEFWRKFKKQHVAMAALAFVLLLVLLALLAP CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIVPYDAENFFDYDKLNAGPSWQHWLGVDPLGRDIFSRILVGARISLAAGFASVAIGGLI HHCCCCCHHCCCHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTALGLLAGYYEGWWDRIVMRISDVLFAFPGILLALGVVAILGSSMVNVVVAVSVFSVPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FARLVRGNTLVLKQMTYVEAVRSIGASDWTIIMRHILPGTISSIVVYFTMRLGTSIITAA HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH SLSFLGMGAQPPTPEWGAMLNEARADMVNAPHVALFPSLAIFLTVLAFNLLGDGLRDALD HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PKIDRQ CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]