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The map label for this gene is ybfI [H]

Identifier: 91785959

GI number: 91785959

Start: 48118

End: 48513

Strand: Reverse

Name: ybfI [H]

Synonym: Bpro_0046

Alternate gene names: 91785959

Gene position: 48513-48118 (Counterclockwise)

Preceding gene: 91785961

Following gene: 91785958

Centisome position: 0.93

GC content: 66.16

Gene sequence:

>396_bases
ATGGACGCGAAGCAAAACCCCCAGACTTTCATGGACGCCGCCGAACGCCGCACGCAACGGCTGCAGCCGGTGCTGGCGCA
TATCAACGCCCACCTCGGCGAGTCCCTGCCACTCCATCAGCTGGCGGCCCTCAGCGGCCTGAGCCTGTGGCGTTTTGCGA
CCGTGTTCCGCGAACACATGGGCGTGGCGCCGCGCCGTTATATTTTTCTGGAGCGTGTGCGTTATGCCAAAGCCCTGCTG
CGCGCCGGCATGGCGCCGGCCACGGTGGCAAGCGAGGCCGGGTTTTGCGACCAGAGCCATCTGTCGCGGCGTTTTAAACA
CGCTTGCCGCGAGACGCCGGGGCAGTACCAGTCGCGCCACCACCATTTTTCCGGGCACGCCGGCATGGCCGCCTGA

Upstream 100 bases:

>100_bases
CCGCAGTATCTGCCGCCTGCCCGCCATTTTTGCAATTGCCTGCCACCCGGCCCGGGTTTTACAGCGCCATCCCCGGTGCG
CCCGGCCTAAGCTTGACACC

Downstream 100 bases:

>100_bases
AGCCTCGGTTTTACCCCGGTTTTATATTCCATTGATTGACAACGTTTTAGGAGTTTTCCATGTCCCTGCAAGACTTTAAA
GTGCTGACCTTTGATGTGGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MDAKQNPQTFMDAAERRTQRLQPVLAHINAHLGESLPLHQLAALSGLSLWRFATVFREHMGVAPRRYIFLERVRYAKALL
RAGMAPATVASEAGFCDQSHLSRRFKHACRETPGQYQSRHHHFSGHAGMAA

Sequences:

>Translated_131_residues
MDAKQNPQTFMDAAERRTQRLQPVLAHINAHLGESLPLHQLAALSGLSLWRFATVFREHMGVAPRRYIFLERVRYAKALL
RAGMAPATVASEAGFCDQSHLSRRFKHACRETPGQYQSRHHHFSGHAGMAA
>Mature_131_residues
MDAKQNPQTFMDAAERRTQRLQPVLAHINAHLGESLPLHQLAALSGLSLWRFATVFREHMGVAPRRYIFLERVRYAKALL
RAGMAPATVASEAGFCDQSHLSRRFKHACRETPGQYQSRHHHFSGHAGMAA

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 14758; Mature: 14758

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAKQNPQTFMDAAERRTQRLQPVLAHINAHLGESLPLHQLAALSGLSLWRFATVFREHM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GVAPRRYIFLERVRYAKALLRAGMAPATVASEAGFCDQSHLSRRFKHACRETPGQYQSRH
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHC
HHFSGHAGMAA
CCCCCCCCCCC
>Mature Secondary Structure
MDAKQNPQTFMDAAERRTQRLQPVLAHINAHLGESLPLHQLAALSGLSLWRFATVFREHM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GVAPRRYIFLERVRYAKALLRAGMAPATVASEAGFCDQSHLSRRFKHACRETPGQYQSRH
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHC
HHFSGHAGMAA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]