BacMap

Definition	Burkholderia xenovorans LB400 chromosome 1, complete sequence.
Accession	NC_007951
Length	4,895,836

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The map label for this gene is 91785767

Identifier: 91785767

GI number: 91785767

Start: 4840465

End: 4840989

Strand: Reverse

Name: 91785767

Synonym: Bxe_A0006

Alternate gene names: NA

Gene position: 4840989-4840465 (Counterclockwise)

Preceding gene: 91785768

Following gene: 91785764

Centisome position: 98.88

GC content: 60.57

Gene sequence:

>525_bases
ATGAGTTCACGCAGGATCGCCGTGCGCCGTTCGGGTGTGCACGGCAAAGGCGTGTTCGCCGTCGAACCGATTGCGGCCGG
CGAGCGGCTGATCGAATACAAGGGCGAGCGGATCTCCTGGAAAGAAGCGTTGCGCCGTCATCCGCACAATCCGGCGGAGC
CGAATCACACGTTCTATTTCGCACTCGACAGCGGCAAGGTGATCGACGGCAAAGTGAACGGCAATAGCGCGCGCTGGATC
AACCATTCCTGCGCGCCGAACTGCGAAGCCGAAGAAATCGACGGTCACGTGTATGTGCACGCGTTGCGCGATATCGCCGA
GGGCGAAGAAGTCTTTTACGACTACGGCCTCGTGATCGACGCGCGGCAAACCAATAAGCTCAAGAAGGAATATGAATGCC
GTTGCGGCGCGCGCAAGTGCCGCGGCACGATGCTGGCGCCGCCGGAGAAGGAGAAGGGCGCGGGCAAGTCCGGGAAGTCG
GCGAAGAAGGCCGGGACAACGGTGAAGAAAGCGAAGAAGAAATGA

Upstream 100 bases:

>100_bases
GCCGCGTTTGCTATGCGCGTCAGAAAAAGCGGCGCGTCAGACGCGGGCATTTGCGACGGCTGCCGATCTTCACCCCAAGT
TTTTCACAAGGATTCATTCA

Downstream 100 bases:

>100_bases
GACGCGGGCTGCCTGCGTCGCTCGCGTTGGCGAACGCGCGAGGCAGCCTGTCGATTATCTGAACTGTCAGATATCCATCG
GCGCCGAGTGCGCCGATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSSRRIAVRRSGVHGKGVFAVEPIAAGERLIEYKGERISWKEALRRHPHNPAEPNHTFYFALDSGKVIDGKVNGNSARWI
NHSCAPNCEAEEIDGHVYVHALRDIAEGEEVFYDYGLVIDARQTNKLKKEYECRCGARKCRGTMLAPPEKEKGAGKSGKS
AKKAGTTVKKAKKK

Sequences:

>Translated_174_residues
MSSRRIAVRRSGVHGKGVFAVEPIAAGERLIEYKGERISWKEALRRHPHNPAEPNHTFYFALDSGKVIDGKVNGNSARWI
NHSCAPNCEAEEIDGHVYVHALRDIAEGEEVFYDYGLVIDARQTNKLKKEYECRCGARKCRGTMLAPPEKEKGAGKSGKS
AKKAGTTVKKAKKK
>Mature_173_residues
SSRRIAVRRSGVHGKGVFAVEPIAAGERLIEYKGERISWKEALRRHPHNPAEPNHTFYFALDSGKVIDGKVNGNSARWIN
HSCAPNCEAEEIDGHVYVHALRDIAEGEEVFYDYGLVIDARQTNKLKKEYECRCGARKCRGTMLAPPEKEKGAGKSGKSA
KKAGTTVKKAKKK

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI56550039, Length=144, Percent_Identity=40.2777777777778, Blast_Score=101, Evalue=3e-22,
Organism=Homo sapiens, GI7662046, Length=144, Percent_Identity=38.8888888888889, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI110349788, Length=169, Percent_Identity=34.3195266272189, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=35.9712230215827, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI91718902, Length=143, Percent_Identity=34.965034965035, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI55741677, Length=146, Percent_Identity=34.9315068493151, Blast_Score=79, Evalue=1e-15,
Organism=Homo sapiens, GI19913358, Length=135, Percent_Identity=34.8148148148148, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19913350, Length=135, Percent_Identity=34.8148148148148, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19913348, Length=135, Percent_Identity=34.8148148148148, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI109633019, Length=135, Percent_Identity=34.8148148148148, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27477095, Length=144, Percent_Identity=31.9444444444444, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI148762969, Length=143, Percent_Identity=32.8671328671329, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI23510384, Length=118, Percent_Identity=36.4406779661017, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI21361095, Length=118, Percent_Identity=36.4406779661017, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI197313748, Length=166, Percent_Identity=28.9156626506024, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI13699811, Length=165, Percent_Identity=32.1212121212121, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI19923586, Length=151, Percent_Identity=31.1258278145695, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17552316, Length=144, Percent_Identity=36.1111111111111, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17552320, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17552318, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193210440, Length=143, Percent_Identity=34.2657342657343, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25148426, Length=137, Percent_Identity=37.2262773722628, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25148423, Length=137, Percent_Identity=37.2262773722628, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565204, Length=161, Percent_Identity=31.055900621118, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71993684, Length=146, Percent_Identity=30.8219178082192, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25141373, Length=145, Percent_Identity=32.4137931034483, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193202392, Length=145, Percent_Identity=32.4137931034483, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71988186, Length=138, Percent_Identity=36.231884057971, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321911, Length=144, Percent_Identity=36.8055555555556, Blast_Score=91, Evalue=1e-19,
Organism=Drosophila melanogaster, GI62472551, Length=140, Percent_Identity=35, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17136558, Length=140, Percent_Identity=35, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI19550181, Length=140, Percent_Identity=35, Blast_Score=97, Evalue=5e-21,
Organism=Drosophila melanogaster, GI19550184, Length=140, Percent_Identity=35, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17136556, Length=140, Percent_Identity=35, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17737643, Length=134, Percent_Identity=36.5671641791045, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24639197, Length=143, Percent_Identity=34.2657342657343, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI28571451, Length=143, Percent_Identity=34.2657342657343, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24650756, Length=176, Percent_Identity=31.8181818181818, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641786, Length=151, Percent_Identity=33.112582781457, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI281360813, Length=151, Percent_Identity=33.112582781457, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19320; Mature: 19189

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRRIAVRRSGVHGKGVFAVEPIAAGERLIEYKGERISWKEALRRHPHNPAEPNHTFYF
CCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHCCCEECHHHHHHHCCCCCCCCCCEEEE
ALDSGKVIDGKVNGNSARWINHSCAPNCEAEEIDGHVYVHALRDIAEGEEVFYDYGLVID
EECCCEEEEEEECCCCCEEECCCCCCCCCHHHCCCEEEEEEHHHHHCCCCEEEECCEEEE
ARQTNKLKKEYECRCGARKCRGTMLAPPEKEKGAGKSGKSAKKAGTTVKKAKKK
CHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHCCC
>Mature Secondary Structure 
SSRRIAVRRSGVHGKGVFAVEPIAAGERLIEYKGERISWKEALRRHPHNPAEPNHTFYF
CCCEEEEEECCCCCCCEEEECCHHHHHHHHHHCCCEECHHHHHHHCCCCCCCCCCEEEE
ALDSGKVIDGKVNGNSARWINHSCAPNCEAEEIDGHVYVHALRDIAEGEEVFYDYGLVID
EECCCEEEEEEECCCCCEEECCCCCCCCCHHHCCCEEEEEEHHHHHCCCCEEEECCEEEE
ARQTNKLKKEYECRCGARKCRGTMLAPPEKEKGAGKSGKSAKKAGTTVKKAKKK
CHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA