| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is 91785325
Identifier: 91785325
GI number: 91785325
Start: 4384648
End: 4386438
Strand: Reverse
Name: 91785325
Synonym: Bxe_A0454
Alternate gene names: NA
Gene position: 4386438-4384648 (Counterclockwise)
Preceding gene: 91785326
Following gene: 91785324
Centisome position: 89.6
GC content: 66.0
Gene sequence:
>1791_bases ATGAAGCCGATCCGCTACACCATCGTTCCCAAACAGCCCGCCGCCCACCTGTTCGAAGTCACCGTGACCGTCGCCGACCC CGATCCGGCCGGCCAGCGGTTCATGCTGCCGGTGTGGATTCCGGGCAGCTACATGGTGCGCGAGTTCGCCCGCAACATCG TGACGCTGCGCGCTTTCAACGACGCCGGCCGCAAGGTGCACGTCGAAAAGACCGACAAGCACACGTGGCAGGCCGCGCCG GTCAAAGGCGCGCTGACGCTGCGCTACGAGGTCTACGCGTGGGATCTGTCGGTGCGCGCCGCGCATCTCGACGACACGAC GGGCTTTTTCAACGGCACGAGCGTGTTCCTCTCGCCGCTCGGTCACGAGGAAGCGCAGTGCGTGGTCGATATCCAGAAAC CGGACGGCGCGGCGTATCGCAACTGGCGTGTGGCCACCGCGCTGCCGGAAGCACGCGGCACGAAGCGTTATGGTTTCGGC GAGTACCGCGCGCAGAACTACGACGAGCTGATCGATCACCCCGTCACGCTGGGCGAATTCGCGCTGGCCACGTTCAAGGC GCATGGCGTGCCGCACGACATCGTGATCGCCGGGCGCGTGGTCGGGCTGGACATGGCGCGTCTGTCCGCCGACCTGAAGC GCATTTGCGAAGCGCAGATCGCGTTGTTCGAGCCCAAGTCGAAGAAAGCGCCAGTGGATCGCTATGTGTTCATGACCCAG GCCGTCACCGATGGATACGGCGGGCTGGAGCACCGCGCTTCGACCGCGCTGATCTGCAATCGCGGCGATCTGCCGGTGGA AGGGCGCGAGGCGCTGACCGAAGGCTACCGAACCTATCTCGGCCTGTGCAGCCACGAATACTTCCACACCTGGAACGTGA AGCGCATCAAACCGGCCGTGTTCGCGCCGTACGACCTGAGCGTCGAAAACTACACGTCGCTGCTGTGGCTGTTCGAAGGC TTCACGTCTTACTACGACGACCTGATCCTCGTGCGCAGCGGCCTGATTTCGCAGGACGACTATTTCGGCCTGCTCGGCAA GGTGATCGGCGGCGTGCAGCGCGGCAGCGGGCGCCTCAAGCAGAGCGTCGCCGAAAGCTCGTTCGACGCCTGGGTCAAAT ACTACCGGCAGGACGAGAACGCGCCGAACGCGATCGTCAGCTATTACACCAAGGGCTCGCTCGTCGCGCTCGCGTTCGAT CTGACCATCCGCGCGCAGACCAATAACCGCAAATCGCTCGACGACGTGATGCGCTTGCTGTGGCAGCGCTTCGGCCGTGA CTTCTATCGCGGCAAGCCGGTCGGTGTGGAAGAAAGCGAGATCGAGGCGCTGTTCGCGGAAGCGACCGGCGCGAAACTGG CCGGGTTGTTCGCCGAAGCCGTGCACGGCACGCGCGATCTGCCGCTCGACACGCTGCTCGCGCCGTTCGGCGTCGCGATT GCGCCCGAGCTCGACAAGAACGGCAAGCCGTCGCTCGGCGCACGTGTGCGCGGCGGCGCGGATTGCACGCTCGCGGCGGT TCATGAGGGCAGCGCCGCGCAGAAAGCCGGGCTCTCGGCCGGCGACGTGCTGATCGCGCTCGACGGCCTGCGCGTGACCG GCTCGAATCTTGACGGGCTGCTCGCGCGCTACCAGCCGGGCGCGAAGGTGGAGGTTCACGCTTTCCGCCGCGACGAGTTG CGCACCACGCAAGTCAAGCTGGACGGCCCTGAGGTGGCGCGCTACAAGCTCGCCGTCAGCGACAAGCGGCCCGCCGCGCG CAAGGCGCGCGAGTACTGGCTGGCAAGCTGA
Upstream 100 bases:
>100_bases GCTGAGCACGCCCAACCCATCCGGCAAAGGAGGCGCGACGTGCGCCTCCTTTCGCATCAAGCCCGACCATCCCCGCCAGA ACACTTCCAATTCGCCGCCG
Downstream 100 bases:
>100_bases TCGTCATCCGGCCGTCGCTATTGGGCGGCGGAGCGTGGCGGATTGTTCTACCACTGCAACAATCCGTCGCCGCCGGACGG CTTTTTCCCGGGTCGGTAAA
Product: metalloprotease, zinc binding
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; Glycyl Aminopeptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 596; Mature: 596
Protein sequence:
>596_residues MKPIRYTIVPKQPAAHLFEVTVTVADPDPAGQRFMLPVWIPGSYMVREFARNIVTLRAFNDAGRKVHVEKTDKHTWQAAP VKGALTLRYEVYAWDLSVRAAHLDDTTGFFNGTSVFLSPLGHEEAQCVVDIQKPDGAAYRNWRVATALPEARGTKRYGFG EYRAQNYDELIDHPVTLGEFALATFKAHGVPHDIVIAGRVVGLDMARLSADLKRICEAQIALFEPKSKKAPVDRYVFMTQ AVTDGYGGLEHRASTALICNRGDLPVEGREALTEGYRTYLGLCSHEYFHTWNVKRIKPAVFAPYDLSVENYTSLLWLFEG FTSYYDDLILVRSGLISQDDYFGLLGKVIGGVQRGSGRLKQSVAESSFDAWVKYYRQDENAPNAIVSYYTKGSLVALAFD LTIRAQTNNRKSLDDVMRLLWQRFGRDFYRGKPVGVEESEIEALFAEATGAKLAGLFAEAVHGTRDLPLDTLLAPFGVAI APELDKNGKPSLGARVRGGADCTLAAVHEGSAAQKAGLSAGDVLIALDGLRVTGSNLDGLLARYQPGAKVEVHAFRRDEL RTTQVKLDGPEVARYKLAVSDKRPAARKAREYWLAS
Sequences:
>Translated_596_residues MKPIRYTIVPKQPAAHLFEVTVTVADPDPAGQRFMLPVWIPGSYMVREFARNIVTLRAFNDAGRKVHVEKTDKHTWQAAP VKGALTLRYEVYAWDLSVRAAHLDDTTGFFNGTSVFLSPLGHEEAQCVVDIQKPDGAAYRNWRVATALPEARGTKRYGFG EYRAQNYDELIDHPVTLGEFALATFKAHGVPHDIVIAGRVVGLDMARLSADLKRICEAQIALFEPKSKKAPVDRYVFMTQ AVTDGYGGLEHRASTALICNRGDLPVEGREALTEGYRTYLGLCSHEYFHTWNVKRIKPAVFAPYDLSVENYTSLLWLFEG FTSYYDDLILVRSGLISQDDYFGLLGKVIGGVQRGSGRLKQSVAESSFDAWVKYYRQDENAPNAIVSYYTKGSLVALAFD LTIRAQTNNRKSLDDVMRLLWQRFGRDFYRGKPVGVEESEIEALFAEATGAKLAGLFAEAVHGTRDLPLDTLLAPFGVAI APELDKNGKPSLGARVRGGADCTLAAVHEGSAAQKAGLSAGDVLIALDGLRVTGSNLDGLLARYQPGAKVEVHAFRRDEL RTTQVKLDGPEVARYKLAVSDKRPAARKAREYWLAS >Mature_596_residues MKPIRYTIVPKQPAAHLFEVTVTVADPDPAGQRFMLPVWIPGSYMVREFARNIVTLRAFNDAGRKVHVEKTDKHTWQAAP VKGALTLRYEVYAWDLSVRAAHLDDTTGFFNGTSVFLSPLGHEEAQCVVDIQKPDGAAYRNWRVATALPEARGTKRYGFG EYRAQNYDELIDHPVTLGEFALATFKAHGVPHDIVIAGRVVGLDMARLSADLKRICEAQIALFEPKSKKAPVDRYVFMTQ AVTDGYGGLEHRASTALICNRGDLPVEGREALTEGYRTYLGLCSHEYFHTWNVKRIKPAVFAPYDLSVENYTSLLWLFEG FTSYYDDLILVRSGLISQDDYFGLLGKVIGGVQRGSGRLKQSVAESSFDAWVKYYRQDENAPNAIVSYYTKGSLVALAFD LTIRAQTNNRKSLDDVMRLLWQRFGRDFYRGKPVGVEESEIEALFAEATGAKLAGLFAEAVHGTRDLPLDTLLAPFGVAI APELDKNGKPSLGARVRGGADCTLAAVHEGSAAQKAGLSAGDVLIALDGLRVTGSNLDGLLARYQPGAKVEVHAFRRDEL RTTQVKLDGPEVARYKLAVSDKRPAARKAREYWLAS
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65914; Mature: 65914
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPIRYTIVPKQPAAHLFEVTVTVADPDPAGQRFMLPVWIPGSYMVREFARNIVTLRAFN CCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHEEEEEEEC DAGRKVHVEKTDKHTWQAAPVKGALTLRYEVYAWDLSVRAAHLDDTTGFFNGTSVFLSPL CCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEECC GHEEAQCVVDIQKPDGAAYRNWRVATALPEARGTKRYGFGEYRAQNYDELIDHPVTLGEF CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCHHHHHCCCCCHHHH ALATFKAHGVPHDIVIAGRVVGLDMARLSADLKRICEAQIALFEPKSKKAPVDRYVFMTQ HHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHEEEEEH AVTDGYGGLEHRASTALICNRGDLPVEGREALTEGYRTYLGLCSHEYFHTWNVKRIKPAV HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEECCEE FAPYDLSVENYTSLLWLFEGFTSYYDDLILVRSGLISQDDYFGLLGKVIGGVQRGSGRLK ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHH QSVAESSFDAWVKYYRQDENAPNAIVSYYTKGSLVALAFDLTIRAQTNNRKSLDDVMRLL HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCHHHHHHHH WQRFGRDFYRGKPVGVEESEIEALFAEATGAKLAGLFAEAVHGTRDLPLDTLLAPFGVAI HHHHCCHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCEEE APELDKNGKPSLGARVRGGADCTLAAVHEGSAAQKAGLSAGDVLIALDGLRVTGSNLDGL CCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHCCCCCCCEEEEEECEEEECCCCHHH LARYQPGAKVEVHAFRRDELRTTQVKLDGPEVARYKLAVSDKRPAARKAREYWLAS HHHCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCC >Mature Secondary Structure MKPIRYTIVPKQPAAHLFEVTVTVADPDPAGQRFMLPVWIPGSYMVREFARNIVTLRAFN CCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHEEEEEEEC DAGRKVHVEKTDKHTWQAAPVKGALTLRYEVYAWDLSVRAAHLDDTTGFFNGTSVFLSPL CCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEECC GHEEAQCVVDIQKPDGAAYRNWRVATALPEARGTKRYGFGEYRAQNYDELIDHPVTLGEF CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCHHHHHCCCCCHHHH ALATFKAHGVPHDIVIAGRVVGLDMARLSADLKRICEAQIALFEPKSKKAPVDRYVFMTQ HHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHEEEEEH AVTDGYGGLEHRASTALICNRGDLPVEGREALTEGYRTYLGLCSHEYFHTWNVKRIKPAV HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEECCEE FAPYDLSVENYTSLLWLFEGFTSYYDDLILVRSGLISQDDYFGLLGKVIGGVQRGSGRLK ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHH QSVAESSFDAWVKYYRQDENAPNAIVSYYTKGSLVALAFDLTIRAQTNNRKSLDDVMRLL HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCHHHHHHHH WQRFGRDFYRGKPVGVEESEIEALFAEATGAKLAGLFAEAVHGTRDLPLDTLLAPFGVAI HHHHCCHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCEEE APELDKNGKPSLGARVRGGADCTLAAVHEGSAAQKAGLSAGDVLIALDGLRVTGSNLDGL CCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHCCCCCCCEEEEEECEEEECCCCHHH LARYQPGAKVEVHAFRRDELRTTQVKLDGPEVARYKLAVSDKRPAARKAREYWLAS HHHCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA