| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is penA [H]
Identifier: 91785299
GI number: 91785299
Start: 4349921
End: 4351786
Strand: Reverse
Name: penA [H]
Synonym: Bxe_A0480
Alternate gene names: 91785299
Gene position: 4351786-4349921 (Counterclockwise)
Preceding gene: 91785300
Following gene: 91785298
Centisome position: 88.89
GC content: 64.58
Gene sequence:
>1866_bases ATGAAAAAATCGTCGGCTCGCAAGAGCGTGGCTTTCTCGGCCAACCCGATCCTGTCGGTGCGCCTGCCAATGTGGCGCTC CAAGCTCGTCGTGTTCATGCTTTTCATGGCGTTCGTCGCGCTCACCGCGCGCGCCTTCTGGATTCAGGGCCCGGGCAACG CGTTCTATCAGAAGCAGGGTGAAATCCGCTATCAGCGCCGCCTCGAACTGCCGGCTACGCGCGGCAAGATTCTCGACCGC AACGGTCTCGTGCTGGCCACGAGTCTGCCGGTGCGCGCGATCTGGGCGATTCCCGAATCGGTGCCGGACGACCTCGGCGC CGACAAGCTGACTTCGCTCGGCAAGCTGCTCGGCATGACGAACAAGGAACTGCGCACCAAGTTGTCGGAAGACAAAAACT TCGTCTACGTGAAACGCCAGGTGCCGGTGGACATTGCGGAAAAAGTCACCGCGCTGGAGATTCCCGGCATTTACTCGCGC GACGAGTACAAGCGCTTCTATCCGGAAGGCGAGATCACGGCCCACCTGATCGGCTTTACCAACGTGGAAGACGAAGGCCA GGAAGGCGTCGAACTCGGCGACCAGAAGCTGCTCGCCGGCGTGTCGGGCAGCCGCCGCGTGATCAAGGACCGCATGGGCC ACATCATCGAGGACGTGGACGAGCAGGTCGTGCCGCACAACGGCCAGGACGTGGATCTCTCGATCGACAGCAAGATTCAG TACATCGCTTATACGAACCTGAAGGCGGCCGTCGAAAAATTCAAGGCGAAGGCCGGCGCGGCAATGGTGATCGACGTGCG CACCGGCGAAGTACTGGCGCTCGTCAATTACCCCACGTACAACCCGAACGACCGCACTCACCTGACCGGCGACCAGTTGC GCAACCGCATCCTGACCGACACGTTCGAACCCGGCTCGATCATGAAGCCGTTCACGGTCTCGCTCGCGCTCGATCTGCAC CGTGTCACGCCGACTACACTGGTTGATACAGGCGGCGGCCGTTTCGTGCTCGACGGCGCGCCGATTACCGACGACAGCGC GTTCGGCGTGCTGACCGTGGGCGGCGTGATCCAGAAGTCGAGCAACATCGGCGCGACGAAGATCGCCATGCAGCTCAAGC CCGAAGAGATGTGGAACATGTACACCAGCATCGGTCTCGGCCAGGCGCCGAAGGTCGGCTTCCCGGGCGCGGCGGCTGGC CGTCTGCGTCCGTGGAAGAGCTGGCGCCGCATCGAGCAGGCCACCATGTCGTACGGCTATGGTCTGTCGGTGTCGCTGTT CCAGTTGGGCCGCGCTTACACCGCGATCGCGCATGACGGCGAGATCATGCCGGTGTCGATCTTCCGCACGCCTGGCGATC AGCCGGCCACCGGCCCGCAGATCTTCGCGCCCACTACCGCTCGCGAAGTGCGCGCCATGCTCGAAACCGTCACGGCGCCG GGCGGCACCTCGCCGGATGCGGCGGTGCCGGGCTATCGCGTCGGCGGCAAGAGCGGCACGGCGTACAAGCACGGCGCGCA CGGCTACGACCACTCCAAATATCGCGCGTCGTTCGTCGGCATGGCGCCCATGCCGAATCCGCGCATCGTCGTGGCCGTTT CGGTCGACGAACCGACCGCGGGCAGCCACTTCGGTGGTCAGGTGTCGGGCCCGGTGTTCTCCAGCATCGTCGGCGATACG CTGCGCTCGCTGAACGTGCCGCCGGACATGCCGGTCAAGCAGATGGTGGTGTCAGACGACTCGGCCCCGCCGGCGCCGAC CGCGCCCGCCACGCCTGCCACGGTCAAGAAACTCTCCACCAGCGCCGGCGCGAAGAAGATGACGATTGCCGCGAACGCGA GAAGCCATCCGGGAGTCGTGCGATGA
Upstream 100 bases:
>100_bases ACCTCACGCTCGATCCGGGCGCGGTGAAAGCTGAAGACGCGCCGATCCCGACTTCCGGCCCCGCATCGGCGCCGGCGGCG ACCCGTCGCGGAGGCGTGCG
Downstream 100 bases:
>100_bases GTGCGCTGCGTCAGAAGCATCCCGCGCAGCGGCAGATCGCCGACGCCCTCACCTGGCTGCACGCTCACGTGCAGCCAGGT GCGCATCTGCACGCCGACAC
Product: peptidoglycan synthetase FtsI
Products: [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-; $diphosphoundecaprenol; undecaprenyl diphosphate
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 621; Mature: 621
Protein sequence:
>621_residues MKKSSARKSVAFSANPILSVRLPMWRSKLVVFMLFMAFVALTARAFWIQGPGNAFYQKQGEIRYQRRLELPATRGKILDR NGLVLATSLPVRAIWAIPESVPDDLGADKLTSLGKLLGMTNKELRTKLSEDKNFVYVKRQVPVDIAEKVTALEIPGIYSR DEYKRFYPEGEITAHLIGFTNVEDEGQEGVELGDQKLLAGVSGSRRVIKDRMGHIIEDVDEQVVPHNGQDVDLSIDSKIQ YIAYTNLKAAVEKFKAKAGAAMVIDVRTGEVLALVNYPTYNPNDRTHLTGDQLRNRILTDTFEPGSIMKPFTVSLALDLH RVTPTTLVDTGGGRFVLDGAPITDDSAFGVLTVGGVIQKSSNIGATKIAMQLKPEEMWNMYTSIGLGQAPKVGFPGAAAG RLRPWKSWRRIEQATMSYGYGLSVSLFQLGRAYTAIAHDGEIMPVSIFRTPGDQPATGPQIFAPTTAREVRAMLETVTAP GGTSPDAAVPGYRVGGKSGTAYKHGAHGYDHSKYRASFVGMAPMPNPRIVVAVSVDEPTAGSHFGGQVSGPVFSSIVGDT LRSLNVPPDMPVKQMVVSDDSAPPAPTAPATPATVKKLSTSAGAKKMTIAANARSHPGVVR
Sequences:
>Translated_621_residues MKKSSARKSVAFSANPILSVRLPMWRSKLVVFMLFMAFVALTARAFWIQGPGNAFYQKQGEIRYQRRLELPATRGKILDR NGLVLATSLPVRAIWAIPESVPDDLGADKLTSLGKLLGMTNKELRTKLSEDKNFVYVKRQVPVDIAEKVTALEIPGIYSR DEYKRFYPEGEITAHLIGFTNVEDEGQEGVELGDQKLLAGVSGSRRVIKDRMGHIIEDVDEQVVPHNGQDVDLSIDSKIQ YIAYTNLKAAVEKFKAKAGAAMVIDVRTGEVLALVNYPTYNPNDRTHLTGDQLRNRILTDTFEPGSIMKPFTVSLALDLH RVTPTTLVDTGGGRFVLDGAPITDDSAFGVLTVGGVIQKSSNIGATKIAMQLKPEEMWNMYTSIGLGQAPKVGFPGAAAG RLRPWKSWRRIEQATMSYGYGLSVSLFQLGRAYTAIAHDGEIMPVSIFRTPGDQPATGPQIFAPTTAREVRAMLETVTAP GGTSPDAAVPGYRVGGKSGTAYKHGAHGYDHSKYRASFVGMAPMPNPRIVVAVSVDEPTAGSHFGGQVSGPVFSSIVGDT LRSLNVPPDMPVKQMVVSDDSAPPAPTAPATPATVKKLSTSAGAKKMTIAANARSHPGVVR >Mature_621_residues MKKSSARKSVAFSANPILSVRLPMWRSKLVVFMLFMAFVALTARAFWIQGPGNAFYQKQGEIRYQRRLELPATRGKILDR NGLVLATSLPVRAIWAIPESVPDDLGADKLTSLGKLLGMTNKELRTKLSEDKNFVYVKRQVPVDIAEKVTALEIPGIYSR DEYKRFYPEGEITAHLIGFTNVEDEGQEGVELGDQKLLAGVSGSRRVIKDRMGHIIEDVDEQVVPHNGQDVDLSIDSKIQ YIAYTNLKAAVEKFKAKAGAAMVIDVRTGEVLALVNYPTYNPNDRTHLTGDQLRNRILTDTFEPGSIMKPFTVSLALDLH RVTPTTLVDTGGGRFVLDGAPITDDSAFGVLTVGGVIQKSSNIGATKIAMQLKPEEMWNMYTSIGLGQAPKVGFPGAAAG RLRPWKSWRRIEQATMSYGYGLSVSLFQLGRAYTAIAHDGEIMPVSIFRTPGDQPATGPQIFAPTTAREVRAMLETVTAP GGTSPDAAVPGYRVGGKSGTAYKHGAHGYDHSKYRASFVGMAPMPNPRIVVAVSVDEPTAGSHFGGQVSGPVFSSIVGDT LRSLNVPPDMPVKQMVVSDDSAPPAPTAPATPATVKKLSTSAGAKKMTIAANARSHPGVVR
Specific function: Synthesis of cross-linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=553, Percent_Identity=40.3254972875226, Blast_Score=398, Evalue=1e-112, Organism=Escherichia coli, GI1786854, Length=623, Percent_Identity=23.916532905297, Blast_Score=104, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: 2.4.1.129
Molecular weight: Translated: 67060; Mature: 67060
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSSARKSVAFSANPILSVRLPMWRSKLVVFMLFMAFVALTARAFWIQGPGNAFYQKQG CCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHCCCC EIRYQRRLELPATRGKILDRNGLVLATSLPVRAIWAIPESVPDDLGADKLTSLGKLLGMT CEEEEEEECCCCCCCCEECCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC NKELRTKLSEDKNFVYVKRQVPVDIAEKVTALEIPGIYSRDEYKRFYPEGEITAHLIGFT CHHHHHHHCCCCCEEEEEEECCCCHHHCEEEEECCCCCCCCHHHHHCCCCCEEEEEEEEC NVEDEGQEGVELGDQKLLAGVSGSRRVIKDRMGHIIEDVDEQVVPHNGQDVDLSIDSKIQ CCCCCCCCCHHCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEE YIAYTNLKAAVEKFKAKAGAAMVIDVRTGEVLALVNYPTYNPNDRTHLTGDQLRNRILTD EEEECCHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCEECHHHHHHHHHCC TFEPGSIMKPFTVSLALDLHRVTPTTLVDTGGGRFVLDGAPITDDSAFGVLTVGGVIQKS CCCCCCCCCCEEEEEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCC SNIGATKIAMQLKPEEMWNMYTSIGLGQAPKVGFPGAAAGRLRPWKSWRRIEQATMSYGY CCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC GLSVSLFQLGRAYTAIAHDGEIMPVSIFRTPGDQPATGPQIFAPTTAREVRAMLETVTAP CCEEHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHCCC GGTSPDAAVPGYRVGGKSGTAYKHGAHGYDHSKYRASFVGMAPMPNPRIVVAVSVDEPTA CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHEEEEEECCCCCCCCEEEEEEECCCCC GSHFGGQVSGPVFSSIVGDTLRSLNVPPDMPVKQMVVSDDSAPPAPTAPATPATVKKLST CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCCCCCCCCHHHHHHHH SAGAKKMTIAANARSHPGVVR CCCCEEEEEEECCCCCCCCCC >Mature Secondary Structure MKKSSARKSVAFSANPILSVRLPMWRSKLVVFMLFMAFVALTARAFWIQGPGNAFYQKQG CCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHCCCC EIRYQRRLELPATRGKILDRNGLVLATSLPVRAIWAIPESVPDDLGADKLTSLGKLLGMT CEEEEEEECCCCCCCCEECCCCEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC NKELRTKLSEDKNFVYVKRQVPVDIAEKVTALEIPGIYSRDEYKRFYPEGEITAHLIGFT CHHHHHHHCCCCCEEEEEEECCCCHHHCEEEEECCCCCCCCHHHHHCCCCCEEEEEEEEC NVEDEGQEGVELGDQKLLAGVSGSRRVIKDRMGHIIEDVDEQVVPHNGQDVDLSIDSKIQ CCCCCCCCCHHCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEE YIAYTNLKAAVEKFKAKAGAAMVIDVRTGEVLALVNYPTYNPNDRTHLTGDQLRNRILTD EEEECCHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCEECHHHHHHHHHCC TFEPGSIMKPFTVSLALDLHRVTPTTLVDTGGGRFVLDGAPITDDSAFGVLTVGGVIQKS CCCCCCCCCCEEEEEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCC SNIGATKIAMQLKPEEMWNMYTSIGLGQAPKVGFPGAAAGRLRPWKSWRRIEQATMSYGY CCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC GLSVSLFQLGRAYTAIAHDGEIMPVSIFRTPGDQPATGPQIFAPTTAREVRAMLETVTAP CCEEHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHCCC GGTSPDAAVPGYRVGGKSGTAYKHGAHGYDHSKYRASFVGMAPMPNPRIVVAVSVDEPTA CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHEEEEEECCCCCCCCEEEEEEECCCCC GSHFGGQVSGPVFSSIVGDTLRSLNVPPDMPVKQMVVSDDSAPPAPTAPATPATVKKLST CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCCCCCCCCHHHHHHHH SAGAKKMTIAANARSHPGVVR CCCCEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n-; $diphosphoundecaprenol; GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-; $diphosphoundecaprenol
Specific reaction: [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n- $diphosphoundecaprenol + GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu- $L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol = [GlcNAc-(1->4)- $Mur2Ac(oyl-L-Ala-gamma-
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3126399 [H]