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The map label for this gene is ydcN [H]

Identifier: 91785146

GI number: 91785146

Start: 4181671

End: 4182360

Strand: Reverse

Name: ydcN [H]

Synonym: Bxe_A0634

Alternate gene names: 91785146

Gene position: 4182360-4181671 (Counterclockwise)

Preceding gene: 91785147

Following gene: 91785145

Centisome position: 85.43

GC content: 68.99

Gene sequence:

>690_bases
ATGCATTCCCCGCTTGCGCTGGTTCGCGATCCCACGGCTGACACCGATGCGTCGCCGCGTGCCGCAGAACCCTTCGATGC
ACTGGAACATCTGGTCGGCGTGAATCTCGCCCGTTTGCGCGCCGAACGGCAACTGTCGCTCGACGCTCTCGCCCGCGCGT
CCGGCGTCTCTCGCGCCATGCTCGCGCAGATCGAATCGGCGCGCAGCGTGCCGTCCATCAAGGTCCTGTGCAAGGTGGCC
GCCGCGTTGAAGGTGTCGGTAGCGGCGTTCCTGCGCCGTCATGCCACCAACGGCTTCGAGCATTTGCCGGCGGAGCGCTC
GTCGCGTGTCGTCAGTTCGAACGGGCGCTATTCGGCACGGCCGCTTTACCCCGACGGAGAGCCGACCGCCGCCGAGTTTC
ACGAGTTGCGTATCGCGCCGTTGCACACCGAAGCCGGCACGCGCCGCGCGCCGGGCACGACGGTGAATCTGGTGGTGAGC
GAAGGCACGCTGGAAGTCAGCGTGCACGATCAGCGCCAGCTACTGGCCACCGGCGACGCGATCGTGTTCGACGCCGACCA
GCCGCACAGCCTGCGCAATCCCGGCGACACGGAAGCGCGCGCGTTTCGCGTGACGCTGAAGGCGGAGACGCCGCCGCGCT
GGGACGTGCCCGCGCACGCCGAGCCGGCCCGAGAGGCCGCACCGGTTTGA

Upstream 100 bases:

>100_bases
AACAGTGTGAAGATAACTTCGTTGGGCGCGGCGGGACGCAATGCTATCTTGCATCCACTAACCGCTTGCCCGCCGTCCGG
CGGCGCTTCTGGAGGCAATC

Downstream 100 bases:

>100_bases
TCTGTGTTCGCAGACACGTGAGCCCGCAATCGGGGATTACCGTCTGACCAGTAGGGTTGCGCTGCATGGGCGGCGCGACT
GTTGTATGCTTTGCCAGCCG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MHSPLALVRDPTADTDASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCKVA
AALKVSVAAFLRRHATNGFEHLPAERSSRVVSSNGRYSARPLYPDGEPTAAEFHELRIAPLHTEAGTRRAPGTTVNLVVS
EGTLEVSVHDQRQLLATGDAIVFDADQPHSLRNPGDTEARAFRVTLKAETPPRWDVPAHAEPAREAAPV

Sequences:

>Translated_229_residues
MHSPLALVRDPTADTDASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCKVA
AALKVSVAAFLRRHATNGFEHLPAERSSRVVSSNGRYSARPLYPDGEPTAAEFHELRIAPLHTEAGTRRAPGTTVNLVVS
EGTLEVSVHDQRQLLATGDAIVFDADQPHSLRNPGDTEARAFRVTLKAETPPRWDVPAHAEPAREAAPV
>Mature_229_residues
MHSPLALVRDPTADTDASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCKVA
AALKVSVAAFLRRHATNGFEHLPAERSSRVVSSNGRYSARPLYPDGEPTAAEFHELRIAPLHTEAGTRRAPGTTVNLVVS
EGTLEVSVHDQRQLLATGDAIVFDADQPHSLRNPGDTEARAFRVTLKAETPPRWDVPAHAEPAREAAPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=171, Percent_Identity=29.2397660818713, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 24629; Mature: 24629

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSPLALVRDPTADTDASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAM
CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHH
LAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHATNGFEHLPAERSSRVVSSNGRYSAR
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCEECCCCCEECC
PLYPDGEPTAAEFHELRIAPLHTEAGTRRAPGTTVNLVVSEGTLEVSVHDQRQLLATGDA
CCCCCCCCCHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCEEEEEECCCHHHEECCCE
IVFDADQPHSLRNPGDTEARAFRVTLKAETPPRWDVPAHAEPAREAAPV
EEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MHSPLALVRDPTADTDASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAM
CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHH
LAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHATNGFEHLPAERSSRVVSSNGRYSAR
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCEECCCCCEECC
PLYPDGEPTAAEFHELRIAPLHTEAGTRRAPGTTVNLVVSEGTLEVSVHDQRQLLATGDA
CCCCCCCCCHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCEEEEEECCCHHHEECCCE
IVFDADQPHSLRNPGDTEARAFRVTLKAETPPRWDVPAHAEPAREAAPV
EEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]