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The map label for this gene is rsmB [H]

Identifier: 91784970

GI number: 91784970

Start: 3981390

End: 3982649

Strand: Reverse

Name: rsmB [H]

Synonym: Bxe_A0810

Alternate gene names: 91784970

Gene position: 3982649-3981390 (Counterclockwise)

Preceding gene: 91784971

Following gene: 91784969

Centisome position: 81.35

GC content: 65.71

Gene sequence:

>1260_bases
ATGAGATTGCATGGTTTTCTGATTGGACAAACTGAGACTTTGTTGGCTGAAGTCCTAAAACTCAACGGCCCGGCCGACGC
CACCACGAGCCGTTTCTTCCGCGCGCACCCGAAGCTCGGGCACGGCGAGCGCGGGGTCATCGCCGAGGCGGTTTTCGCGG
TGCTGCGCCGCCGGATGGAATTCGCCCATCTGGCGGAGGGCGGCGCCGGCAGCCCGGCACGCCGCATGGCGCTGCTCGGC
CTGATGCAGACGGCGGGACGTAACGCGCTCAAGCCGTTTGTGTCGGAACAGGAACTGAGCTGGCTCGAACACGTCTCGAA
GATCGACCCGGAAAGCCTGCCGCTGCGGATTCGCCTGAATCTGCCCGACTGGATCTATCAGGCGCTCAGCAAGCGTTTCG
AACCCGACGAACTGGCGCAGCTGGCCGCGGCGCTGAACTACCCGGCGCCGCTGGATCTGCGCACCAACCCGATCAAGGCG
AGCCGCGACGACGTGCTGAACGCACTGTCGAAAGCTGGCATCGAGGCCGGCGCCACGCCGTTCGCACCGTTCGGCGTGCG
GGTGGTCGGCAAGCCGCCGCTCACCAAACTCGACGCGTTCCAGCATGGCTGGGTCGAAGTGCAGGACGAAGGCAGCCAGT
TGCTGTGTTCGCTGGTCGCGCCCAAGCGCGGCGAAATGATCGTCGACTTCTGTGCGGGCGCGGGCGGCAAGACGCTGGCG
CTGGGCGCGGCAATGCGCTCGACCGGCCGGCTCTATGCCTTCGACGTCTCCGAGCGGCGTCTCGCCAAGCTCAAGCCGCG
CCTTGCGCGCAGCGGCCTGTCAAATGTGAATCCGGTGCTGATCGATAGTGAACACGATTCCAAGATCAAGCGCCTCGCGG
GCAAGATCGACCGCGTGCTGGTCGATGCACCGTGCAGCGGCCTGGGCACGCTGCGTCGCAACCCGGATCTGAAGTGGCGC
CAGTCGCCGGAATCGGTGGCCGAACTGGCGCCGAAGCAGGCGTCGATTCTGGCGAGCGCCGCGCGTCTGGTAAAGAAGGG
CGGACGTCTGGTCTATGCCACCTGCTCGATTCTGGAAGCCGAAAACGAGGCGGTGGTGGAGCAGTTCCTCGCCGGCCATC
CCGATTTCGCTCTGGTGCCCGCGCGCGACGTGCTGGCCGAGCAGCGCATCGATCTGGAAATGGGCGATTATCTTTCGCTG
TGGCCGCACCGCCACGCAACGGACGGCTTCTTCGCCGCCGTGCTGGAACGCCAGAGCTAG

Upstream 100 bases:

>100_bases
GGTTCGTCGAAGGGCGCCTTGCTCTCGAAGGCCTGCGTGTCACGCTTACGCCGCCGGAGCCGCAATGGCTCTTTGCCGGT
CACACCGCCGGAGAGGGCGC

Downstream 100 bases:

>100_bases
GCGCAGGCGTAACAGGCTTCTGCCGGCGCGCGCGGGTTCGATTCCTGAACCCGGCTGGGCGCCGGCGACTTCCGCGACAT
CATGCAAAACCGTCTTTTCC

Product: NOL1/NOP2/Sun family protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MRLHGFLIGQTETLLAEVLKLNGPADATTSRFFRAHPKLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGSPARRMALLG
LMQTAGRNALKPFVSEQELSWLEHVSKIDPESLPLRIRLNLPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKA
SRDDVLNALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEMIVDFCAGAGGKTLA
LGAAMRSTGRLYAFDVSERRLAKLKPRLARSGLSNVNPVLIDSEHDSKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QSPESVAELAPKQASILASAARLVKKGGRLVYATCSILEAENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGDYLSL
WPHRHATDGFFAAVLERQS

Sequences:

>Translated_419_residues
MRLHGFLIGQTETLLAEVLKLNGPADATTSRFFRAHPKLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGSPARRMALLG
LMQTAGRNALKPFVSEQELSWLEHVSKIDPESLPLRIRLNLPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKA
SRDDVLNALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEMIVDFCAGAGGKTLA
LGAAMRSTGRLYAFDVSERRLAKLKPRLARSGLSNVNPVLIDSEHDSKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QSPESVAELAPKQASILASAARLVKKGGRLVYATCSILEAENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGDYLSL
WPHRHATDGFFAAVLERQS
>Mature_419_residues
MRLHGFLIGQTETLLAEVLKLNGPADATTSRFFRAHPKLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGSPARRMALLG
LMQTAGRNALKPFVSEQELSWLEHVSKIDPESLPLRIRLNLPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKA
SRDDVLNALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEMIVDFCAGAGGKTLA
LGAAMRSTGRLYAFDVSERRLAKLKPRLARSGLSNVNPVLIDSEHDSKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWR
QSPESVAELAPKQASILASAARLVKKGGRLVYATCSILEAENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGDYLSL
WPHRHATDGFFAAVLERQS

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=323, Percent_Identity=31.2693498452012, Blast_Score=129, Evalue=7e-30,
Organism=Homo sapiens, GI76150623, Length=323, Percent_Identity=31.2693498452012, Blast_Score=129, Evalue=7e-30,
Organism=Homo sapiens, GI32698918, Length=226, Percent_Identity=30.5309734513274, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI8922322, Length=291, Percent_Identity=28.5223367697594, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI270288818, Length=291, Percent_Identity=28.5223367697594, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI23199998, Length=291, Percent_Identity=28.5223367697594, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI270288816, Length=291, Percent_Identity=28.5223367697594, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI39995082, Length=201, Percent_Identity=30.8457711442786, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI301336155, Length=201, Percent_Identity=30.8457711442786, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI40316918, Length=154, Percent_Identity=34.4155844155844, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI2367212, Length=260, Percent_Identity=34.6153846153846, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87081985, Length=290, Percent_Identity=29.6551724137931, Blast_Score=108, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17536757, Length=297, Percent_Identity=30.976430976431, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI115534021, Length=224, Percent_Identity=31.25, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71998419, Length=226, Percent_Identity=31.4159292035398, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI25143471, Length=282, Percent_Identity=28.3687943262411, Blast_Score=83, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324268, Length=309, Percent_Identity=26.8608414239482, Blast_Score=115, Evalue=9e-27,
Organism=Saccharomyces cerevisiae, GI6319447, Length=243, Percent_Identity=29.2181069958848, Blast_Score=83, Evalue=8e-17,
Organism=Drosophila melanogaster, GI22024126, Length=300, Percent_Identity=28.6666666666667, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI21356579, Length=300, Percent_Identity=26.6666666666667, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21355201, Length=165, Percent_Identity=32.1212121212121, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24668781, Length=172, Percent_Identity=30.2325581395349, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21356513, Length=172, Percent_Identity=30.2325581395349, Blast_Score=72, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 45700; Mature: 45700

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHGFLIGQTETLLAEVLKLNGPADATTSRFFRAHPKLGHGERGVIAEAVFAVLRRRME
CCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FAHLAEGGAGSPARRMALLGLMQTAGRNALKPFVSEQELSWLEHVSKIDPESLPLRIRLN
HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCEEEEEC
LPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKASRDDVLNALSKAGIEAGATP
CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
FAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEMIVDFCAGAGGKTLA
CCCCCEEEECCCCCHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCEEEEECCCCCCCEEE
LGAAMRSTGRLYAFDVSERRLAKLKPRLARSGLSNVNPVLIDSEHDSKIKRLAGKIDRVL
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHEE
VDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKKGGRLVYATCSILEA
EECCCCCCHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHC
ENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGDYLSLWPHRHATDGFFAAVLERQS
CCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MRLHGFLIGQTETLLAEVLKLNGPADATTSRFFRAHPKLGHGERGVIAEAVFAVLRRRME
CCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FAHLAEGGAGSPARRMALLGLMQTAGRNALKPFVSEQELSWLEHVSKIDPESLPLRIRLN
HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCEEEEEC
LPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKASRDDVLNALSKAGIEAGATP
CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
FAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEMIVDFCAGAGGKTLA
CCCCCEEEECCCCCHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCEEEEECCCCCCCEEE
LGAAMRSTGRLYAFDVSERRLAKLKPRLARSGLSNVNPVLIDSEHDSKIKRLAGKIDRVL
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHEE
VDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKKGGRLVYATCSILEA
EECCCCCCHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHC
ENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGDYLSLWPHRHATDGFFAAVLERQS
CCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]