| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ybaP [C]
Identifier: 91784563
GI number: 91784563
Start: 3554267
End: 3555178
Strand: Reverse
Name: ybaP [C]
Synonym: Bxe_A1236
Alternate gene names: 91784563
Gene position: 3555178-3554267 (Counterclockwise)
Preceding gene: 91784564
Following gene: 91784562
Centisome position: 72.62
GC content: 67.21
Gene sequence:
>912_bases TTGAGCGCATTTGCACGTGGCGTTGACGCACAGCCTCGGGTGGGACTATGGTGGGCTCGCGCCCGTCACCGCGCGCACGC GCGGCACCTCAATTGTTCGATTGAGCAGCGCGCCTGCTTTTCTGTGTCATTGCCTGTCCACCCCCGAGGTTGCATGTACC TACAACTCACCGGCACTCACGTTCGCGTGCTTGGCTCGATGCATCTCTTTCCCGCGACCAGTCGCAGAACGCCGCCGTGG ATCGCTGAAGCGTATGACTGGGCCGAAGCGCTCGTCTTCGAGTCCGATCCGCCGACGATTCTCCCGTTGCTGAAGGCCGC CGGGCAAGACGGCGCCGCCCGGTTGCAGCCGCTGCTATCCGCCGACGCATGGCAGCAGCTTCAAGCCGCGTGGCCTGTTG AAGGCCCGCTGGCGCCGCTCGTCGATCTGCGTCCGTGGGCCGCGCTGATCGTCGCGCCGACGCTGTTCCAGCACGTCGTC GAAGGTGTCGAGCCGCGCATGTTGCGCTCGGCGATCGCGCAGGCCAAACCGTATCGGTATCTCGAGACCGCGCAGGAGGT GGCGGCGGCGCTCGATTCGATCCCGCTCGATGCGCTCGGCGCAGCGCTCGGCCTGCTGATGGCCGATCTCGACGAACCGC AGCGCACGCTCGAGCGCATGCATGCGGCCTGGCTGGAAGGCGATCTGCCCGCCGTGCACCGCATCGCCGTCGAATCGCCG ATGTTCAATCTGCCCGGCATCCGGCACGCGATTCTCGACGCGCGCAATCGCGCCTGGGCCGCGCGCCTGGCCGAGTGGCT CACACGGCCGGAACGCACGTTGGTGGTCGTCGGCGCGCTGCATTTGTGCGGACCCGGCAACCTGATCGAATGTCTCGCGC GGCCCGTCGAGCCGGTCTTTGCCCATCCATGA
Upstream 100 bases:
>100_bases TCTGCGCCAGAAAAGCCCCATTGTTTGGGGCTTTATTTTTTATTAGACCCTGGTTGGAGATGTCCATGCGGGACATTGTC CGCGCGCTGGCCGCGGCCGC
Downstream 100 bases:
>100_bases CAGGCGCGTCGCAGCGCGGTCGGAAACGGGTCGTGTGCGGCATAATCTCGCATCACCGCGGTGTGTGCGGTGCGCTCCTT TCTATAGAAAAACGTTGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: GumN Protein; Gumn Family Protein; GumN Protein Superfamily
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MSAFARGVDAQPRVGLWWARARHRAHARHLNCSIEQRACFSVSLPVHPRGCMYLQLTGTHVRVLGSMHLFPATSRRTPPW IAEAYDWAEALVFESDPPTILPLLKAAGQDGAARLQPLLSADAWQQLQAAWPVEGPLAPLVDLRPWAALIVAPTLFQHVV EGVEPRMLRSAIAQAKPYRYLETAQEVAAALDSIPLDALGAALGLLMADLDEPQRTLERMHAAWLEGDLPAVHRIAVESP MFNLPGIRHAILDARNRAWAARLAEWLTRPERTLVVVGALHLCGPGNLIECLARPVEPVFAHP
Sequences:
>Translated_303_residues MSAFARGVDAQPRVGLWWARARHRAHARHLNCSIEQRACFSVSLPVHPRGCMYLQLTGTHVRVLGSMHLFPATSRRTPPW IAEAYDWAEALVFESDPPTILPLLKAAGQDGAARLQPLLSADAWQQLQAAWPVEGPLAPLVDLRPWAALIVAPTLFQHVV EGVEPRMLRSAIAQAKPYRYLETAQEVAAALDSIPLDALGAALGLLMADLDEPQRTLERMHAAWLEGDLPAVHRIAVESP MFNLPGIRHAILDARNRAWAARLAEWLTRPERTLVVVGALHLCGPGNLIECLARPVEPVFAHP >Mature_302_residues SAFARGVDAQPRVGLWWARARHRAHARHLNCSIEQRACFSVSLPVHPRGCMYLQLTGTHVRVLGSMHLFPATSRRTPPWI AEAYDWAEALVFESDPPTILPLLKAAGQDGAARLQPLLSADAWQQLQAAWPVEGPLAPLVDLRPWAALIVAPTLFQHVVE GVEPRMLRSAIAQAKPYRYLETAQEVAAALDSIPLDALGAALGLLMADLDEPQRTLERMHAAWLEGDLPAVHRIAVESPM FNLPGIRHAILDARNRAWAARLAEWLTRPERTLVVVGALHLCGPGNLIECLARPVEPVFAHP
Specific function: Unknown
COG id: COG3735
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33370; Mature: 33239
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAFARGVDAQPRVGLWWARARHRAHARHLNCSIEQRACFSVSLPVHPRGCMYLQLTGTH CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCE VRVLGSMHLFPATSRRTPPWIAEAYDWAEALVFESDPPTILPLLKAAGQDGAARLQPLLS EEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCCHHHHHHHHH ADAWQQLQAAWPVEGPLAPLVDLRPWAALIVAPTLFQHVVEGVEPRMLRSAIAQAKPYRY HHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH LETAQEVAAALDSIPLDALGAALGLLMADLDEPQRTLERMHAAWLEGDLPAVHRIAVESP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCC MFNLPGIRHAILDARNRAWAARLAEWLTRPERTLVVVGALHLCGPGNLIECLARPVEPVF CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHHCCCCHHC AHP CCC >Mature Secondary Structure SAFARGVDAQPRVGLWWARARHRAHARHLNCSIEQRACFSVSLPVHPRGCMYLQLTGTH CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCE VRVLGSMHLFPATSRRTPPWIAEAYDWAEALVFESDPPTILPLLKAAGQDGAARLQPLLS EEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCCHHHHHHHHH ADAWQQLQAAWPVEGPLAPLVDLRPWAALIVAPTLFQHVVEGVEPRMLRSAIAQAKPYRY HHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH LETAQEVAAALDSIPLDALGAALGLLMADLDEPQRTLERMHAAWLEGDLPAVHRIAVESP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCC MFNLPGIRHAILDARNRAWAARLAEWLTRPERTLVVVGALHLCGPGNLIECLARPVEPVF CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHHCCCCHHC AHP CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA