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The map label for this gene is yhcS [C]

Identifier: 91784452

GI number: 91784452

Start: 3427475

End: 3428413

Strand: Reverse

Name: yhcS [C]

Synonym: Bxe_A1347

Alternate gene names: 91784452

Gene position: 3428413-3427475 (Counterclockwise)

Preceding gene: 91784458

Following gene: 91784451

Centisome position: 70.03

GC content: 65.18

Gene sequence:

>939_bases
ATGGATACGCTTCAAAACATGCGCGTATTTGTCCGTGTCGTCGAAGCGGGCAGCTTTACGGGTGCCGCGCAGCATCTGAA
CACGACCACGGCCTATGCGTCGCGCGCGGTGTCCGATCTGGAAGCGCATCTGCGCACCCGACTGCTGAACCGCACCACGC
GCCGCATTGCGCTGACCGAGGCCGGCGAGCGCTATCTGCAGCGCTGCGAGCAGATTCTCGCGTACGTGGACCAGGCGGAA
GCCGAGGCGGGCGACGCCCATGCCCGTCCGTCCGGCAAGCTCAAGGTCCACGCCATGACGAGCTTCGGCCAGCACTATGT
GGTGCCCGCTGCTGGCCGCTATCAGCAGCGCTACCCGGACGTCCATATCGAACTGACGCTCGCGCAGCGCATGCCCGATC
TGCTCGACGAAGGCTTCGACGTGTCGCTCACGCTCGCAACCGGTTTGCCGGATTCGGGGCTGGTGTCGCAGCGCCTCGGC
AGCGCGTTCAGCATTGCATGCGCGTCGCCGGCCTATCTGGAGCTGCACGGCGTGCCGCAAACGCCCGCGGACCTTGCGCG
TCACACCTGTCTGCAAATGGTCACGCCGGTTTTCCCGACCGACAAATGGACCTTCGACGGCCCGAACGGCGAGGAAACGA
TCGCCCTCGGACCGACCACTTTCCAGGTGAACGTGGCCGAAGCGATGGCGGTGGCCGTATCGAGCGGCATGGGCGTCGGG
CTGATTCCGATCTACTCGGCGATCAGCGGCTTGCGCAGCGGAGAACTGGTGTGGCTGCTGCCGGAATACACGTCGCAGGA
GATGAATCTGTACGCGTTGTACCCGTCGCGGCAGTATCTGGACGCGAAGATTCGCACGTGGATCGAGTTCCTGCGCGACG
TATTGCCCGCCACGCTGGCCGCGGATCAGGCGGAGTTGCGCGAGTTCGCGCGCGCCTGA

Upstream 100 bases:

>100_bases
TTGCGGAATAACCGGTAAAGGTGCAAGGCATTTTTACGCAATGTGTGACAATCGCCTTTGCGAATCGTGTAACAATCGCT
TCCGATCACAAGGGAAAGTT

Downstream 100 bases:

>100_bases
AGTGCCGCGCGGCGGCGTGAACGCGTGTTACACGAGTGCCGCGTCGCAACATTTCCTTACTTCTGCCGCGCGGACGATTT
GCTAACGTGTCATTCATGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPDVHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLG
SAFSIACASPAYLELHGVPQTPADLARHTCLQMVTPVFPTDKWTFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG
LIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPSRQYLDAKIRTWIEFLRDVLPATLAADQAELREFARA

Sequences:

>Translated_312_residues
MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPDVHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLG
SAFSIACASPAYLELHGVPQTPADLARHTCLQMVTPVFPTDKWTFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG
LIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPSRQYLDAKIRTWIEFLRDVLPATLAADQAELREFARA
>Mature_312_residues
MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPDVHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLG
SAFSIACASPAYLELHGVPQTPADLARHTCLQMVTPVFPTDKWTFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG
LIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPSRQYLDAKIRTWIEFLRDVLPATLAADQAELREFARA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=33.7883959044369, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=33.1058020477816, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=32.0689655172414, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=30.794701986755, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=30.2083333333333, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=26.1168384879725, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=26.2798634812287, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789173, Length=308, Percent_Identity=27.5974025974026, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=33.7662337662338, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693105, Length=122, Percent_Identity=27.8688524590164, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=24.6575342465753, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=31.7073170731707, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=24, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082132, Length=299, Percent_Identity=22.742474916388, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=143, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34244; Mature: 34244

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCHHHHCCC
VHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQ
EEEEEEHHHCCHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCEEEEECCCC
TPADLARHTCLQMVTPVFPTDKWTFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG
CHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEECCCEEEEEHHHHHHHHHHCCCCCH
LIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPSRQYLDAKIRTWIEFLRDVLPATLA
HHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
ADQAELREFARA
CCHHHHHHHHCC
>Mature Secondary Structure
MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCHHHHCCC
VHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQ
EEEEEEHHHCCHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCEEEEECCCC
TPADLARHTCLQMVTPVFPTDKWTFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG
CHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEECCCEEEEEHHHHHHHHHHCCCCCH
LIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPSRQYLDAKIRTWIEFLRDVLPATLA
HHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
ADQAELREFARA
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]